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Items: 27

1.

A Leishmania infantum genetic marker associated with miltefosine treatment failure for visceral leishmaniasis.

Carnielli JBT, Crouch K, Forrester S, Silva VC, Carvalho SFG, Damasceno JD, Brown E, Dickens NJ, Costa DL, Costa CHN, Dietze R, Jeffares DC, Mottram JC.

EBioMedicine. 2018 Oct;36:83-91. doi: 10.1016/j.ebiom.2018.09.029. Epub 2018 Sep 27.

2.

Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells.

Ellis DA, Mustonen V, Rodríguez-López M, Rallis C, Malecki M, Jeffares DC, Bähler J.

Genetics. 2018 Oct;210(2):733-744. doi: 10.1534/genetics.118.301262. Epub 2018 Aug 2.

3.

The natural diversity and ecology of fission yeast.

Jeffares DC.

Yeast. 2018 Mar;35(3):253-260. doi: 10.1002/yea.3293. Epub 2018 Feb 8. Review.

4.

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.

Jeffares DC, Jolly C, Hoti M, Speed D, Shaw L, Rallis C, Balloux F, Dessimoz C, Bähler J, Sedlazeck FJ.

Nat Commun. 2017 Jan 24;8:14061. doi: 10.1038/ncomms14061.

5.

Spotsizer: High-throughput quantitative analysis of microbial growth.

Bischof L, Převorovský M, Rallis C, Jeffares DC, Arzhaeva Y, Bähler J.

Biotechniques. 2016 Oct 1;61(4):191-201. doi: 10.2144/000114459.

6.

Does the Ribosome Challenge our Understanding of the RNA World?

Poole AM, Jeffares DC, Hoeppner MP, Penny D.

J Mol Evol. 2016 Jan;82(1):1-4. No abstract available.

PMID:
27148607
7.

Does the Ribosome Challenge our Understanding of the RNA World?

Poole AM, Jeffares DC, Hoeppner MP, Penny D.

J Mol Evol. 2016 Jan;82(1):1-4. doi: 10.1007/s00239-015-9720-x. Epub 2015 Nov 18.

PMID:
26582049
8.

The genomic and phenotypic diversity of Schizosaccharomyces pombe.

Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O'Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J.

Nat Genet. 2015 Mar;47(3):235-41. doi: 10.1038/ng.3215. Epub 2015 Feb 9.

9.

A beginners guide to estimating the non-synonymous to synonymous rate ratio of all protein-coding genes in a genome.

Jeffares DC, Tomiczek B, Sojo V, dos Reis M.

Methods Mol Biol. 2015;1201:65-90. doi: 10.1007/978-1-4939-1438-8_4.

PMID:
25388108
10.

LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.

Bitton DA, Rallis C, Jeffares DC, Smith GC, Chen YY, Codlin S, Marguerat S, Bähler J.

Genome Res. 2014 Jul;24(7):1169-79. doi: 10.1101/gr.166819.113. Epub 2014 Apr 7.

11.

PoolHap: inferring haplotype frequencies from pooled samples by next generation sequencing.

Long Q, Jeffares DC, Zhang Q, Ye K, Nizhynska V, Ning Z, Tyler-Smith C, Nordborg M.

PLoS One. 2011 Jan 5;6(1):e15292. doi: 10.1371/journal.pone.0015292.

12.

Long- and short-term selective forces on malaria parasite genomes.

Nygaard S, Braunstein A, Malsen G, Van Dongen S, Gardner PP, Krogh A, Otto TD, Pain A, Berriman M, McAuliffe J, Dermitzakis ET, Jeffares DC.

PLoS Genet. 2010 Sep 9;6(9):e1001099. doi: 10.1371/journal.pgen.1001099.

13.

An overview of the introns-first theory.

Penny D, Hoeppner MP, Poole AM, Jeffares DC.

J Mol Evol. 2009 Nov;69(5):527-40. doi: 10.1007/s00239-009-9279-5. Epub 2009 Sep 24.

PMID:
19777149
14.

Evolutionarily stable association of intronic snoRNAs and microRNAs with their host genes.

Hoeppner MP, White S, Jeffares DC, Poole AM.

Genome Biol Evol. 2009 Nov 5;1:420-8. doi: 10.1093/gbe/evp045.

15.

Rapidly regulated genes are intron poor.

Jeffares DC, Penkett CJ, Bähler J.

Trends Genet. 2008 Aug;24(8):375-8. doi: 10.1016/j.tig.2008.05.006. Epub 2008 Jun 27. Erratum in: Trends Genet. 2008 Oct;24(10):488.

PMID:
18586348
16.

Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum.

Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A.

Genome Res. 2008 Feb;18(2):281-92. Epub 2007 Dec 20.

17.

Genome variation and evolution of the malaria parasite Plasmodium falciparum.

Jeffares DC, Pain A, Berry A, Cox AV, Stalker J, Ingle CE, Thomas A, Quail MA, Siebenthall K, Uhlemann AC, Kyes S, Krishna S, Newbold C, Dermitzakis ET, Berriman M.

Nat Genet. 2007 Jan;39(1):120-5. Epub 2006 Dec 10. Erratum in: Nat Genet. 2007 Apr;39(4):567. Nat Genet. 2007 Mar;39(3):422.

18.

Outsourcing the nucleus: nuclear pore complex genes are no longer encoded in nucleomorph genomes.

Neumann N, Jeffares DC, Poole AM.

Evol Bioinform Online. 2007 Feb 27;2:23-34.

19.

The biology of intron gain and loss.

Jeffares DC, Mourier T, Penny D.

Trends Genet. 2006 Jan;22(1):16-22. Epub 2005 Nov 14.

PMID:
16290250
20.

Diversification of genes encoding mei2 -like RNA binding proteins in plants.

Anderson GH, Alvarez ND, Gilman C, Jeffares DC, Trainor VC, Hanson MR, Veit B.

Plant Mol Biol. 2004 Mar;54(5):653-70.

PMID:
15356386
21.

Direct isolation of poly(A)+ RNA from 4 M guanidine thiocyanate-lysed cell extracts using locked nucleic acid-oligo(T) capture.

Jacobsen N, Nielsen PS, Jeffares DC, Eriksen J, Ohlsson H, Arctander P, Kauppinen S.

Nucleic Acids Res. 2004 Apr 19;32(7):e64.

22.

Differences in non-LTR retrotransposons within C. elegans and C. briggsae genomes.

Zagrobelny M, Jeffares DC, Arctander P.

Gene. 2004 Apr 14;330:61-6.

PMID:
15087124
23.

A description of the Mei2-like protein family; structure, phylogenetic distribution and biological context.

Jeffares DC, Phillips MJ, Moore S, Veit B.

Dev Genes Evol. 2004 Mar;214(3):149-58. Epub 2004 Feb 17.

PMID:
14986133
24.

Eukaryotic intron loss.

Mourier T, Jeffares DC.

Science. 2003 May 30;300(5624):1393. No abstract available.

25.

Relics from the RNA world.

Jeffares DC, Poole AM, Penny D.

J Mol Evol. 1998 Jan;46(1):18-36. Review.

PMID:
9419222
26.

The path from the RNA world.

Poole AM, Jeffares DC, Penny D.

J Mol Evol. 1998 Jan;46(1):1-17. Review.

PMID:
9419221
27.

Pre-rRNA processing and the path from the RNA world.

Jeffares DC, Poole AM, Penny D.

Trends Biochem Sci. 1995 Aug;20(8):298-9. No abstract available.

PMID:
7545338

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