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Genomic Insights into the Carbon and Energy Metabolism of a Thermophilic Deep-Sea Bacterium Deferribacter autotrophicus Revealed New Metabolic Traits in the Phylum Deferribacteres.

Slobodkin A, Slobodkina G, Allioux M, Alain K, Jebbar M, Shadrin V, Kublanov I, Toshchakov S, Bonch-Osmolovskaya E.

Genes (Basel). 2019 Oct 26;10(11). pii: E849. doi: 10.3390/genes10110849.


Chemosynthetic ectosymbionts associated with a shallow-water marine nematode.

Bellec L, Bonavita MC, Hourdez S, Jebbar M, Tasiemski A, Durand L, Gayet N, Zeppilli D.

Sci Rep. 2019 May 7;9(1):7019. doi: 10.1038/s41598-019-43517-8.


Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater.

Trigodet F, Larché N, Morrison HG, Jebbar M, Thierry D, Maignien L.

Front Microbiol. 2019 Feb 7;10:170. doi: 10.3389/fmicb.2019.00170. eCollection 2019.


The Effect of Crowding on Protein Stability, Rigidity, and High Pressure Sensitivity in Whole Cells.

Golub M, Martinez N, Michoud G, Ollivier J, Jebbar M, Oger P, Peters J.

Langmuir. 2018 Sep 4;34(35):10419-10425. doi: 10.1021/acs.langmuir.8b01240. Epub 2018 Aug 21.


Development of an Effective 6-Methylpurine Counterselection Marker for Genetic Manipulation in Thermococcus barophilus.

Birien T, Thiel A, Henneke G, Flament D, Moalic Y, Jebbar M.

Genes (Basel). 2018 Feb 7;9(2). pii: E77. doi: 10.3390/genes9020077.


Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1T.

L'Haridon S, Corre E, Guan Y, Vinu M, La Cono V, Yakimov M, Stingl U, Toffin L, Jebbar M.

Genome Announc. 2018 Jan 18;6(3). pii: e01482-17. doi: 10.1128/genomeA.01482-17.


Two viruses, MCV1 and MCV2, which infect Marinitoga bacteria isolated from deep-sea hydrothermal vents: functional and genomic analysis.

Mercier C, Lossouarn J, Nesbø CL, Haverkamp THA, Baudoux AC, Jebbar M, Bienvenu N, Thiroux S, Dupont S, Geslin C.

Environ Microbiol. 2018 Feb;20(2):577-587. doi: 10.1111/1462-2920.13967. Epub 2017 Dec 4.


Arsenobetaine: an ecophysiologically important organoarsenical confers cytoprotection against osmotic stress and growth temperature extremes.

Hoffmann T, Warmbold B, Smits SHJ, Tschapek B, Ronzheimer S, Bashir A, Chen C, Rolbetzki A, Pittelkow M, Jebbar M, Seubert A, Schmitt L, Bremer E.

Environ Microbiol. 2018 Jan;20(1):305-323. doi: 10.1111/1462-2920.13999. Epub 2017 Dec 7.


Draft Genome Sequence of Phaeobacter leonis Type Strain 306, an Alphaproteobacterium Isolated from Mediterranean Sea Sediments.

Gaboyer F, Maignien L, Jebbar M, Alain K.

Genome Announc. 2017 Jun 29;5(26). pii: e00312-17. doi: 10.1128/genomeA.00312-17.


Draft Genome of Halomonas lionensis RHS90T, a Stress-Tolerant Gammaproteobacterium Isolated from Mediterranean Sea Sediments.

Gaboyer F, Maignien L, Jebbar M, Alain K.

Genome Announc. 2017 Jun 8;5(23). pii: e00311-17. doi: 10.1128/genomeA.00311-17.


Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin.

Oger PM, Callac N, Oger-Desfeux C, Hughes S, Gillet B, Jebbar M, Godfroy A.

Genome Announc. 2017 Feb 16;5(7). pii: e01667-16. doi: 10.1128/genomeA.01667-16.


Complete Genome Sequence of Methanohalophilus halophilus DSM 3094T, Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia.

L'Haridon S, Corre E, Guan Y, Vinu M, La Cono V, Yakimov M, Stingl U, Toffin L, Jebbar M.

Genome Announc. 2017 Feb 16;5(7). pii: e01604-16. doi: 10.1128/genomeA.01604-16.


Desulfurobacterium indicum sp. nov., a thermophilic sulfur-reducing bacterium from the Indian Ocean.

Cao J, Birien T, Gayet N, Huang Z, Shao Z, Jebbar M, Alain K.

Int J Syst Evol Microbiol. 2017 Jun;67(6):1665-1668. doi: 10.1099/ijsem.0.001837. Epub 2017 Jun 7.


Complete genome sequence and whole-genome phylogeny of Kosmotoga pacifica type strain SLHLJ1T from an East Pacific hydrothermal sediment.

Jiang L, L'Haridon S, Jebbar M, Xu H, Alain K, Shao Z.

Stand Genomic Sci. 2017 Jan 5;12:3. doi: 10.1186/s40793-016-0214-2. eCollection 2017.


Combined Whole-Cell High-Throughput Functional Screening for Identification of New Nicotinamidases/Pyrazinamidases in Metagenomic/Polygenomic Libraries.

Zapata-Pérez R, García-Saura AG, Jebbar M, Golyshin PN, Sánchez-Ferrer Á.

Front Microbiol. 2016 Nov 29;7:1915. doi: 10.3389/fmicb.2016.01915. eCollection 2016.


Anaeromicrobium sediminis gen. nov., sp. nov., a fermentative bacterium isolated from deep-sea sediment.

Zhang X, Zeng X, Li X, Alain K, Jebbar M, Shao Z.

Int J Syst Evol Microbiol. 2017 May;67(5):1462-1467. doi: 10.1099/ijsem.0.001739. Epub 2017 May 18.


Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.

Dalmasso C, Oger P, Selva G, Courtine D, L'Haridon S, Garlaschelli A, Roussel E, Miyazaki J, Reveillaud J, Jebbar M, Takai K, Maignien L, Alain K.

Syst Appl Microbiol. 2016 Oct;39(7):440-444. doi: 10.1016/j.syapm.2016.08.003. Epub 2016 Aug 26.


High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes.

Martinez N, Michoud G, Cario A, Ollivier J, Franzetti B, Jebbar M, Oger P, Peters J.

Sci Rep. 2016 Sep 6;6:32816. doi: 10.1038/srep32816.


Thermodesulfatator autotrophicus sp. nov., a thermophilic sulfate-reducing bacterium from the Indian Ocean.

Lai Q, Cao J, Dupont S, Shao Z, Jebbar M, Alain K.

Int J Syst Evol Microbiol. 2016 Oct;66(10):3978-3982. doi: 10.1099/ijsem.0.001297. Epub 2016 Jul 11.


Pseudodesulfovibrio indicus gen. nov., sp. nov., a piezophilic sulfate-reducing bacterium from the Indian Ocean and reclassification of four species of the genus Desulfovibrio.

Cao J, Gayet N, Zeng X, Shao Z, Jebbar M, Alain K.

Int J Syst Evol Microbiol. 2016 Oct;66(10):3904-3911. doi: 10.1099/ijsem.0.001286. Epub 2016 Jul 8.


High hydrostatic pressure adaptive strategies in an obligate piezophile Pyrococcus yayanosii.

Michoud G, Jebbar M.

Sci Rep. 2016 Jun 2;6:27289. doi: 10.1038/srep27289.


Characterization and antimicrobial potential of extremely halophilic archaea isolated from hypersaline environments of the Algerian Sahara.

Quadri I, Hassani II, l'Haridon S, Chalopin M, Hacène H, Jebbar M.

Microbiol Res. 2016 May-Jun;186-187:119-31. doi: 10.1016/j.micres.2016.04.003. Epub 2016 Apr 9.


Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent.

Callac N, Oger P, Lesongeur F, Rattray JE, Vannier P, Michoud G, Beauverger M, Gayet N, Rouxel O, Jebbar M, Godfroy A.

Int J Syst Evol Microbiol. 2016 Aug;66(8):3142-3149. doi: 10.1099/ijsem.0.001160. Epub 2016 May 17.


Genome Sequence of the Piezophilic, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio indicus J2T.

Cao J, Maignien L, Shao Z, Alain K, Jebbar M.

Genome Announc. 2016 Apr 7;4(2). pii: e00214-16. doi: 10.1128/genomeA.00214-16.


Complete Genome Sequence of Hyperthermophilic Piezophilic Archaeon Palaeococcus pacificus DY20341T, Isolated from Deep-Sea Hydrothermal Sediments.

Zeng X, Jebbar M, Shao Z.

Genome Announc. 2015 Sep 17;3(5). pii: e01080-15. doi: 10.1128/genomeA.01080-15.


Deep sea, the last great unexplored earth frontier harboring the largest unknown and untapped remote microbial diversity on our planet.

Jebbar M.

Res Microbiol. 2015 Nov;166(9):665-7. doi: 10.1016/j.resmic.2015.08.003. Epub 2015 Sep 3. No abstract available.


Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions.

Vannier P, Michoud G, Oger P, Marteinsson VÞ, Jebbar M.

Res Microbiol. 2015 Nov;166(9):717-25. doi: 10.1016/j.resmic.2015.07.006. Epub 2015 Aug 1.


Effects of hydrostatic pressure on yeasts isolated from deep-sea hydrothermal vents.

Burgaud G, Hué NT, Arzur D, Coton M, Perrier-Cornet JM, Jebbar M, Barbier G.

Res Microbiol. 2015 Nov;166(9):700-9. doi: 10.1016/j.resmic.2015.07.005. Epub 2015 Jul 28.


Functional Screening of Hydrolytic Activities Reveals an Extremely Thermostable Cellulase from a Deep-Sea Archaeon.

Leis B, Heinze S, Angelov A, Pham VT, Thürmer A, Jebbar M, Golyshin PN, Streit WR, Daniel R, Liebl W.

Front Bioeng Biotechnol. 2015 Jul 1;3:95. doi: 10.3389/fbioe.2015.00095. eCollection 2015.


Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Jebbar M, Franzetti B, Girard E, Oger P.

Extremophiles. 2015 Jul;19(4):721-40. doi: 10.1007/s00792-015-0760-3. Epub 2015 Jun 23.


Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus.

Cario A, Mizgier A, Thiel A, Jebbar M, Oger PM.

Biochimie. 2015 Nov;118:286-93. doi: 10.1016/j.biochi.2015.05.011. Epub 2015 May 22.


Caloranaerobacter ferrireducens sp. nov., an anaerobic, thermophilic, iron (III)-reducing bacterium isolated from deep-sea hydrothermal sulfide deposits.

Zeng X, Zhang Z, Li X, Jebbar M, Alain K, Shao Z.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1714-8. doi: 10.1099/ijs.0.000165. Epub 2015 Mar 3.


'Ménage à trois': a selfish genetic element uses a virus to propagate within Thermotogales.

Lossouarn J, Nesbø CL, Mercier C, Zhaxybayeva O, Johnson MS, Charchuck R, Farasin J, Bienvenu N, Baudoux AC, Michoud G, Jebbar M, Geslin C.

Environ Microbiol. 2015 Sep;17(9):3278-88. doi: 10.1111/1462-2920.12783. Epub 2015 Mar 2.


Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics.

Alcaide M, Tchigvintsev A, Martínez-Martínez M, Popovic A, Reva ON, Lafraya Á, Bargiela R, Nechitaylo TY, Matesanz R, Cambon-Bonavita MA, Jebbar M, Yakimov MM, Savchenko A, Golyshina OV, Yakunin AF, Golyshin PN, Ferrer M; MAMBA Consortium.

Appl Environ Microbiol. 2015 Mar;81(6):2125-36. doi: 10.1128/AEM.03387-14. Epub 2015 Jan 16.


Anoxybacter fermentans gen. nov., sp. nov., a piezophilic, thermophilic, anaerobic, fermentative bacterium isolated from a deep-sea hydrothermal vent.

Zeng X, Zhang Z, Li X, Zhang X, Cao J, Jebbar M, Alain K, Shao Z.

Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):710-5. doi: 10.1099/ijs.0.068221-0. Epub 2014 Dec 10.


Abiotic stress protection by ecologically abundant dimethylsulfoniopropionate and its natural and synthetic derivatives: insights from Bacillus subtilis.

Broy S, Chen C, Hoffmann T, Brock NL, Nau-Wagner G, Jebbar M, Smits SH, Dickschat JS, Bremer E.

Environ Microbiol. 2015 Jul;17(7):2362-78. doi: 10.1111/1462-2920.12698. Epub 2014 Dec 17.


Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.

Alcaide M, Stogios PJ, Lafraya Á, Tchigvintsev A, Flick R, Bargiela R, Chernikova TN, Reva ON, Hai T, Leggewie CC, Katzke N, La Cono V, Matesanz R, Jebbar M, Jaeger KE, Yakimov MM, Yakunin AF, Golyshin PN, Golyshina OV, Savchenko A, Ferrer M; MAMBA Consortium.

Environ Microbiol. 2015 Feb;17(2):332-45. doi: 10.1111/1462-2920.12660. Epub 2014 Dec 17.


Physiological features of Halomonas lionensis sp. nov., a novel bacterium isolated from a Mediterranean Sea sediment.

Gaboyer F, Vandenabeele-Trambouze O, Cao J, Ciobanu MC, Jebbar M, Le Romancer M, Alain K.

Res Microbiol. 2014 Sep;165(7):490-500. doi: 10.1016/j.resmic.2014.07.009. Epub 2014 Jul 31.


Genetic manipulations of the hyperthermophilic piezophilic archaeon Thermococcus barophilus.

Thiel A, Michoud G, Moalic Y, Flament D, Jebbar M.

Appl Environ Microbiol. 2014 Apr;80(7):2299-306. doi: 10.1128/AEM.00084-14. Epub 2014 Jan 31.


The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria.

Jan C, Petersen JM, Werner J, Teeling H, Huang S, Glöckner FO, Golyshina OV, Dubilier N, Golyshin PN, Jebbar M, Cambon-Bonavita MA.

Environ Microbiol. 2014 Sep;16(9):2723-38. doi: 10.1111/1462-2920.12406. Epub 2014 Mar 4.


Microorganisms persist at record depths in the subseafloor of the Canterbury Basin.

Ciobanu MC, Burgaud G, Dufresne A, Breuker A, Rédou V, Ben Maamar S, Gaboyer F, Vandenabeele-Trambouze O, Lipp JS, Schippers A, Vandenkoornhuyse P, Barbier G, Jebbar M, Godfroy A, Alain K.

ISME J. 2014 Jul;8(7):1370-80. doi: 10.1038/ismej.2013.250. Epub 2014 Jan 16. Erratum in: ISME J. 2014 Nov;8(11):2352.


Kosmotoga pacifica sp. nov., a thermophilic chemoorganoheterotrophic bacterium isolated from an East Pacific hydrothermal sediment.

L'Haridon S, Jiang L, Alain K, Chalopin M, Rouxel O, Beauverger M, Xu H, Shao Z, Jebbar M.

Extremophiles. 2014 Jan;18(1):81-8. doi: 10.1007/s00792-013-0596-7. Epub 2013 Nov 22.


Palaeococcus pacificus sp. nov., an archaeon from deep-sea hydrothermal sediment.

Zeng X, Zhang X, Jiang L, Alain K, Jebbar M, Shao Z.

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):2155-9. doi: 10.1099/ijs.0.044487-0. Epub 2012 Oct 26.


Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.

Lucas S, Han J, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Peters L, Mikhailova N, Teshima H, Detter JC, Han C, Tapia R, Land M, Hauser L, Kyrpides NC, Ivanova N, Pagani I, Vannier P, Oger P, Bartlett DH, Noll KM, Woyke T, Jebbar M.

J Bacteriol. 2012 Nov;194(21):5974-5. doi: 10.1128/JB.01430-12.


DNA extractions from deep subseafloor sediments: novel cryogenic-mill-based procedure and comparison to existing protocols.

Alain K, Callac N, Ciobanu MC, Reynaud Y, Duthoit F, Jebbar M.

J Microbiol Methods. 2011 Dec;87(3):355-62. doi: 10.1016/j.mimet.2011.09.015. Epub 2011 Oct 7.


Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1.

Jun X, Lupeng L, Minjuan X, Oger P, Fengping W, Jebbar M, Xiang X.

J Bacteriol. 2011 Aug;193(16):4297-8. doi: 10.1128/JB.05345-11. Epub 2011 Jun 24.


Pyrococcus yayanosii sp. nov., an obligate piezophilic hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.

Birrien JL, Zeng X, Jebbar M, Cambon-Bonavita MA, Quérellou J, Oger P, Bienvenu N, Xiao X, Prieur D.

Int J Syst Evol Microbiol. 2011 Dec;61(Pt 12):2827-31. doi: 10.1099/ijs.0.024653-0. Epub 2011 Jan 14.


Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP.

Vannier P, Marteinsson VT, Fridjonsson OH, Oger P, Jebbar M.

J Bacteriol. 2011 Mar;193(6):1481-2. doi: 10.1128/JB.01490-10. Epub 2011 Jan 7.

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