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Items: 28

1.

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota.

McKay LJ, Dlakić M, Fields MW, Delmont TO, Eren AM, Jay ZJ, Klingelsmith KB, Rusch DB, Inskeep WP.

Nat Microbiol. 2019 Apr;4(4):614-622. doi: 10.1038/s41564-019-0362-4. Epub 2019 Mar 4.

PMID:
30833730
2.

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.

Jarett JK, Nayfach S, Podar M, Inskeep W, Ivanova NN, Munson-McGee J, Schulz F, Young M, Jay ZJ, Beam JP, Kyrpides NC, Malmstrom RR, Stepanauskas R, Woyke T.

Microbiome. 2018 Sep 17;6(1):161. doi: 10.1186/s40168-018-0539-8.

3.

Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats.

Jay ZJ, Beam JP, Dlakić M, Rusch DB, Kozubal MA, Inskeep WP.

Nat Microbiol. 2018 Jun;3(6):732-740. doi: 10.1038/s41564-018-0163-1. Epub 2018 May 14.

PMID:
29760463
4.

The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.

Ledbetter RN, Garcia Costas AM, Lubner CE, Mulder DW, Tokmina-Lukaszewska M, Artz JH, Patterson A, Magnuson TS, Jay ZJ, Duan HD, Miller J, Plunkett MH, Hoben JP, Barney BM, Carlson RP, Miller AF, Bothner B, King PW, Peters JW, Seefeldt LC.

Biochemistry. 2017 Aug 15;56(32):4177-4190. doi: 10.1021/acs.biochem.7b00389. Epub 2017 Aug 3.

PMID:
28704608
5.

Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities.

Jennings RM, Moran JJ, Jay ZJ, Beam JP, Whitmore LM, Kozubal MA, Kreuzer HW, Inskeep WP.

Front Microbiol. 2017 Feb 3;8:88. doi: 10.3389/fmicb.2017.00088. eCollection 2017.

6.

The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park.

Jay ZJ, Beam JP, Kozubal MA, Jennings RD, Rusch DB, Inskeep WP.

Environ Microbiol. 2016 Dec;18(12):4755-4769. doi: 10.1111/1462-2920.13366. Epub 2016 May 30.

PMID:
27130276
7.

Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes.

Colman DR, Jay ZJ, Inskeep WP, Jennings Rd, Maas KR, Rusch DB, Takacs-Vesbach CD.

Front Microbiol. 2016 Mar 15;7:304. doi: 10.3389/fmicb.2016.00304. eCollection 2016.

8.

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.

Beam JP, Bernstein HC, Jay ZJ, Kozubal MA, Jennings Rd, Tringe SG, Inskeep WP.

Front Microbiol. 2016 Feb 15;7:25. doi: 10.3389/fmicb.2016.00025. eCollection 2016.

9.

Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine.

Carlson RP, Oshota O, Shipman M, Caserta JA, Hu P, Saunders CW, Xu J, Jay ZJ, Reeder N, Richards A, Pettigrew C, Peyton BM.

Extremophiles. 2016 May;20(3):261-74. doi: 10.1007/s00792-015-0806-6. Epub 2016 Feb 18.

PMID:
26888357
10.

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function.

Inskeep WP, Jay ZJ, Macur RE, Clingenpeel S, Tenney A, Lovalvo D, Beam JP, Kozubal MA, Shanks WC, Morgan LA, Kan J, Gorby Y, Yooseph S, Nealson K.

Front Microbiol. 2015 Oct 26;6:1044. doi: 10.3389/fmicb.2015.01044. eCollection 2015.

11.

The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales.

Jay ZJ, Inskeep WP.

Biol Direct. 2015 Jul 9;10:35. doi: 10.1186/s13062-015-0065-6.

12.

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community.

Beam JP, Jay ZJ, Schmid MC, Rusch DB, Romine MF, Jennings Rde M, Kozubal MA, Tringe SG, Wagner M, Inskeep WP.

ISME J. 2016 Jan;10(1):210-24. doi: 10.1038/ismej.2015.83. Epub 2015 Jul 3.

13.

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park.

Jay ZJ, Beam JP, Dohnalkova A, Lohmayer R, Bodle B, Planer-Friedrich B, Romine M, Inskeep WP.

Appl Environ Microbiol. 2015 Sep 1;81(17):5907-16. doi: 10.1128/AEM.01095-15. Epub 2015 Jun 19.

14.

Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park.

Beam JP, Jay ZJ, Kozubal MA, Inskeep WP.

ISME J. 2014 Apr;8(4):938-51. doi: 10.1038/ismej.2013.193. Epub 2013 Nov 7.

15.

Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.

Jay ZJ, Rusch DB, Tringe SG, Bailey C, Jennings RM, Inskeep WP.

Appl Environ Microbiol. 2014 Jan;80(1):294-305. doi: 10.1128/AEM.02860-13. Epub 2013 Oct 25.

16.

Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

Klatt CG, Inskeep WP, Herrgard MJ, Jay ZJ, Rusch DB, Tringe SG, Niki Parenteau M, Ward DM, Boomer SM, Bryant DA, Miller SR.

Front Microbiol. 2013 Jun 3;4:106. doi: 10.3389/fmicb.2013.00106. eCollection 2013.

17.

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.

Takacs-Vesbach C, Inskeep WP, Jay ZJ, Herrgard MJ, Rusch DB, Tringe SG, Kozubal MA, Hamamura N, Macur RE, Fouke BW, Reysenbach AL, McDermott TR, Jennings Rd, Hengartner NW, Xie G.

Front Microbiol. 2013 May 29;4:84. doi: 10.3389/fmicb.2013.00084. eCollection 2013.

18.

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.

Inskeep WP, Jay ZJ, Herrgard MJ, Kozubal MA, Rusch DB, Tringe SG, Macur RE, Jennings Rd, Boyd ES, Spear JR, Roberto FF.

Front Microbiol. 2013 May 15;4:95. doi: 10.3389/fmicb.2013.00095. eCollection 2013.

19.

The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.

Inskeep WP, Jay ZJ, Tringe SG, Herrgård MJ, Rusch DB; YNP Metagenome Project Steering Committee and Working Group Members.

Front Microbiol. 2013 May 6;4:67. doi: 10.3389/fmicb.2013.00067. eCollection 2013.

20.

Microbial community structure and sulfur biogeochemistry in mildly-acidic sulfidic geothermal springs in Yellowstone National Park.

Macur RE, Jay ZJ, Taylor WP, Kozubal MA, Kocar BD, Inskeep WP.

Geobiology. 2013 Jan;11(1):86-99. doi: 10.1111/gbi.12015. Epub 2012 Nov 21.

PMID:
23231658
21.

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.

Kozubal MA, Romine M, Jennings Rd, Jay ZJ, Tringe SG, Rusch DB, Beam JP, McCue LA, Inskeep WP.

ISME J. 2013 Mar;7(3):622-34. doi: 10.1038/ismej.2012.132. Epub 2012 Nov 15.

22.

Telephone peer support for women with gynaecological cancer: benefits and challenges for supporters.

Pistrang N, Jay Z, Gessler S, Barker C.

Psychooncology. 2013 Apr;22(4):886-94. doi: 10.1002/pon.3080. Epub 2012 May 15.

PMID:
22585444
23.

Microbial iron cycling in acidic geothermal springs of yellowstone national park: integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms.

Kozubal MA, Macur RE, Jay ZJ, Beam JP, Malfatti SA, Tringe SG, Kocar BD, Borch T, Inskeep WP.

Front Microbiol. 2012 Mar 26;3:109. doi: 10.3389/fmicb.2012.00109. eCollection 2012.

24.

Telephone peer support for women with gynaecological cancer: recipients' perspectives.

Pistrang N, Jay Z, Gessler S, Barker C.

Psychooncology. 2012 Oct;21(10):1082-90. doi: 10.1002/pon.2005. Epub 2011 Jul 12.

PMID:
21751294
25.

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH, Macur RE, Hamamura N, Jennings Rd, Fouke BW, Reysenbach AL, Roberto F, Young M, Schwartz A, Boyd ES, Badger JH, Mathur EJ, Ortmann AC, Bateson M, Geesey G, Frazier M.

PLoS One. 2010 Mar 19;5(3):e9773. doi: 10.1371/journal.pone.0009773.

26.

In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.

Taffs R, Aston JE, Brileya K, Jay Z, Klatt CG, McGlynn S, Mallette N, Montross S, Gerlach R, Inskeep WP, Ward DM, Carlson RP.

BMC Syst Biol. 2009 Dec 10;3:114. doi: 10.1186/1752-0509-3-114.

27.

Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7.

Vogler AJ, Keys C, Nemoto Y, Colman RE, Jay Z, Keim P.

J Bacteriol. 2006 Jun;188(12):4253-63.

28.

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