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Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species.

Maughan PJ, Lee R, Walstead R, Vickerstaff RJ, Fogarty MC, Brouwer CR, Reid RR, Jay JJ, Bekele WA, Jackson EW, Tinker NA, Langdon T, Schlueter JA, Jellen EN.

BMC Biol. 2019 Nov 22;17(1):92. doi: 10.1186/s12915-019-0712-y.


5-Day Changes in Biomarkers of Exposure among Adult Smokers after Completely Switching from Combustible Cigarettes to a Nicotine-Salt Pod System.

Jay J, Pfaunmiller EL, Huang NJ, Cohen G, Graff D.

Nicotine Tob Res. 2019 Nov 5. pii: ntz206. doi: 10.1093/ntr/ntz206. [Epub ahead of print]


Alcohol outlets and firearm violence: a place-based case-control study using satellite imagery and machine learning.

Jay J.

Inj Prev. 2019 Aug 29. pii: injuryprev-2019-043248. doi: 10.1136/injuryprev-2019-043248. [Epub ahead of print]


A scoping review of patterns, motives, and risk and protective factors for adolescent firearm carriage.

Oliphant SN, Mouch CA, Rowhani-Rahbar A, Hargarten S, Jay J, Hemenway D, Zimmerman M, Carter PM; FACTS Consortium.

J Behav Med. 2019 Aug;42(4):763-810. doi: 10.1007/s10865-019-00048-x. Epub 2019 Aug 1. Review.


Urban building demolitions, firearm violence and drug crime.

Jay J, Miratrix LW, Branas CC, Zimmerman MA, Hemenway D.

J Behav Med. 2019 Aug;42(4):626-634. doi: 10.1007/s10865-019-00031-6. Epub 2019 Aug 1.


Oncologic Resection in Laparoscopic Versus Robotic Transhiatal Esophagectomy.

Washington K, Watkins JR, Jay J, Jeyarajah DR.

JSLS. 2019 Apr-Jun;23(2). pii: e2019.00017. doi: 10.4293/JSLS.2019.00017.


Neuropsychiatric Manifestations of Partial Agenesis of the Corpus Callosum: A Case Report and Literature Review.

Popoola O, Olayinka O, Azizi H, Ojimba C, Khan T, Kallikkadan J, Ahmad M, Jay J, Canale C, Langdon S, Kahn A, Nuthalapati D, Jayaraj S, Mahbub A, Olaolu O, Kodjo K, Olupona T, Nisenoff C, Jolayemi A.

Case Rep Psychiatry. 2019 Mar 25;2019:5925191. doi: 10.1155/2019/5925191. eCollection 2019.


Nutrient, Metal, and Organics Removal from Stormwater Using a Range of Bioretention Soil Mixtures.

Jay JG, Tyler-Plog M, Brown SL, Grothkopp F.

J Environ Qual. 2019 Mar;48(2):493-501. doi: 10.2134/jeq2018.07.0283.


Fate of antibiotic resistance genes and antibiotic-resistant bacteria in water resource recovery facilities.

Li R, Jay JA, Stenstrom MK.

Water Environ Res. 2019 Jan;91(1):5-20. doi: 10.1002/wer.1008. Review.


Connecting nutrition composition measures to biomedical research.

Jay JJ, Sanders A, Reid RW, Brouwer CR.

BMC Res Notes. 2018 Dec 12;11(1):883. doi: 10.1186/s13104-018-3997-y.


Buprenorphine-Sustained Release Alters Hemodynamic Parameters in a Rat Burn Model.

Guillory AN, Clayton RP, Prasai A, Jay JW, Wetzel M, El Ayadi A, Herndon DN, Finnerty CC.

J Surg Res. 2018 Dec;232:154-159. doi: 10.1016/j.jss.2018.03.016. Epub 2018 Jul 5.


Reduced Postburn Hypertrophic Scarring and Improved Physical Recovery With Yearlong Administration of Oxandrolone and Propranolol.

Herndon D, Capek KD, Ross E, Jay JW, Prasai A, Ayadi AE, Foncerrada-Ortega G, Blears E, Sommerhalder C, McMullen K, Amtmann D, Cox R, Hundeshagen G, Jennings K, Sousse LE, Suman OE, Meyer WJ 3rd, Finnerty CC.

Ann Surg. 2018 Sep;268(3):431-441. doi: 10.1097/SLA.0000000000002926.


Multi-tiered approach utilizing microbial source tracking and human associated-IMS/ATP for surveillance of human fecal contamination in Baja California, Mexico.

Zimmer-Faust AG, Thulsiraj V, Lee CM, Whitener V, Rugh M, Mendoza-Espinosa L, Jay JA.

Sci Total Environ. 2018 Nov 1;640-641:475-484. doi: 10.1016/j.scitotenv.2018.05.172. Epub 2018 Jun 1.


IgG Antibody 3D Structures and Dynamics.

Jay JW, Bray B, Qi Y, Igbinigie E, Wu H, Li J, Ren G.

Antibodies (Basel). 2018 Apr 19;7(2). pii: E18. doi: 10.3390/antib7020018. Review.


Gene expression patterns associated with human placental trophoblast differentiation.

Jiang SW, Zhou W, Wang J, Little LM, Leaphart L, Jay J, Igbinigie E, Chen H, Li J.

Clin Chim Acta. 2019 Aug;495:637-645. doi: 10.1016/j.cca.2018.01.012. Epub 2018 Jan 10.


Effect of dietary palmitic and stearic acids on sucrose motivation and hypothalamic and striatal cell signals in the rat.

Figlewicz DP, Jay J, West CH, Zavosh A, Hampe CS, Radtke JR, Raskind MA, Peskind ER.

Am J Physiol Regul Integr Comp Physiol. 2018 Feb 1;314(2):R191-R200. doi: 10.1152/ajpregu.00340.2017. Epub 2017 Nov 1.


The One Health path to infectious disease prevention and resilience.

Heymann DL, Jay J, Kock R.

Trans R Soc Trop Med Hyg. 2017 Jun 1;111(6):233-234. doi: 10.1093/trstmh/trx052. No abstract available. Erratum in: Trans R Soc Trop Med Hyg. 2017 Jul 1;111(7):332.


Predictors of Phosphorus Leaching from Bioretention Soil Media.

Jay JG, Brown SL, Kurtz K, Grothkopp F.

J Environ Qual. 2017 Sep;46(5):1098-1105. doi: 10.2134/jeq2017.06.0232.


The impact of comorbidities on the benefits of prolonged androgen ablation in patients with T3-4 prostate cancer treated with external beam radiation therapy.

Tran E, Paquette M, Jay J, Hamm J, Liu M, Duncan G, Pickles T, Tyldesley S.

Radiother Oncol. 2017 Aug;124(2):291-295. doi: 10.1016/j.radonc.2017.04.028. Epub 2017 Jul 4.


Burn Trauma Acutely Increases the Respiratory Capacity and Function of Liver Mitochondria.

Bohanon FJ, Nunez Lopez O, Herndon DN, Wang X, Bhattarai N, Ayadi AE, Prasai A, Jay JW, Rojas-Khalil Y, Toliver-Kinsky TE, Finnerty CC, Radhakrishnan RS, Porter C.

Shock. 2018 Apr;49(4):466-473. doi: 10.1097/SHK.0000000000000935.


Remediation of groundwater contaminated with arsenic through enhanced natural attenuation: Batch and column studies.

Hafeznezami S, Zimmer-Faust AG, Jun D, Rugh MB, Haro HL, Park A, Suh J, Najm T, Reynolds MD, Davis JA, Parhizkar T, Jay JA.

Water Res. 2017 Oct 1;122:545-556. doi: 10.1016/j.watres.2017.06.029. Epub 2017 Jun 12.


Disparate Antibiotic Resistance Gene Quantities Revealed across 4 Major Cities in California: A Survey in Drinking Water, Air, and Soil at 24 Public Parks.

Echeverria-Palencia CM, Thulsiraj V, Tran N, Ericksen CA, Melendez I, Sanchez MG, Walpert D, Yuan T, Ficara E, Senthilkumar N, Sun F, Li R, Hernandez-Cira M, Gamboa D, Haro H, Paulson SE, Zhu Y, Jay JA.

ACS Omega. 2017 May 31;2(5):2255-2263. doi: 10.1021/acsomega.7b00118. Epub 2017 May 24.


Effect of freshwater sediment characteristics on the persistence of fecal indicator bacteria and genetic markers within a Southern California watershed.

Zimmer-Faust AG, Thulsiraj V, Marambio-Jones C, Cao Y, Griffith JF, Holden PA, Jay JA.

Water Res. 2017 Aug 1;119:1-11. doi: 10.1016/j.watres.2017.04.028. Epub 2017 Apr 18.


Sources and persistence of fecal indicator bacteria and Bacteroidales in sand as measured by culture-based and culture-independent methods: A case study at Santa Monica Pier, California.

Mika KB, Chavarria KA, Imamura G, Tang C, Torres R, Jay JA.

Water Air Soil Pollut. 2017 Apr;228. pii: 124. doi: 10.1007/s11270-017-3291-y. Epub 2017 Mar 6.


Coordinate activities of BRD4 and CDK9 in the transcriptional elongation complex are required for TGFβ-induced Nox4 expression and myofibroblast transdifferentiation.

Ijaz T, Jamaluddin M, Zhao Y, Zhang Y, Jay J, Finnerty CC, Herndon DN, Tilton RG, Brasier AR.

Cell Death Dis. 2017 Feb 9;8(2):e2606. doi: 10.1038/cddis.2016.434.


The interaction between equipoise and logistics in clinical trials: A case study.

Warshaw MG, Carey VJ, McFarland EJ, Dawson L, Abrams E, Melvin A, Fairlie L, Spiegel H, Jay J, Agwu AL; IMPAACT P1094 Team.

Clin Trials. 2017 Jun;14(3):314-318. doi: 10.1177/1740774517690734. Epub 2017 Jan 31.


Effects of the nephrilin peptide on post-burn glycemic control, renal function, fat and lean body mass, and wound healing.

Mascarenhas DD, Ayadi AE, Wetzel M, Prasai A, Mifflin R, Jay J, Herndon DN, Finnerty CC.

Int J Burns Trauma. 2016 Nov 30;6(3):44-50. eCollection 2016.


A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement.

Chaffin AS, Huang YF, Smith S, Bekele WA, Babiker E, Gnanesh BN, Foresman BJ, Blanchard SG, Jay JJ, Reid RW, Wight CP, Chao S, Oliver R, Islamovic E, Kolb FL, McCartney C, Mitchell Fetch JW, Beattie AD, Bjørnstad Å, Bonman JM, Langdon T, Howarth CJ, Brouwer CR, Jellen EN, Klos KE, Poland JA, Hsieh TF, Brown R, Jackson E, Schlueter JA, Tinker NA.

Plant Genome. 2016 Jul;9(2). doi: 10.3835/plantgenome2015.10.0102.


Building from the HIV Response toward Universal Health Coverage.

Jay J, Buse K, Hart M, Wilson D, Marten R, Kellerman S, Odetoyinbo M, Quick JD, Evans T, Piot P, Dybul M, Binagwaho A.

PLoS Med. 2016 Aug 16;13(8):e1002083. doi: 10.1371/journal.pmed.1002083. eCollection 2016 Aug.


Lollipops in the Clinic: Information Dense Mutation Plots for Precision Medicine.

Jay JJ, Brouwer C.

PLoS One. 2016 Aug 4;11(8):e0160519. doi: 10.1371/journal.pone.0160519. eCollection 2016.


Adsorption and desorption of arsenate on sandy sediments from contaminated and uncontaminated saturated zones: Kinetic and equilibrium modeling.

Hafeznezami S, Zimmer-Faust AG, Dunne A, Tran T, Yang C, Lam JR, Reynolds MD, Davis JA, Jay JA.

Environ Pollut. 2016 Aug;215:290-301. doi: 10.1016/j.envpol.2016.05.029. Epub 2016 May 21.


Reducing acute kidney injury due to vancomycin in trauma patients.

Ko A, Harada MY, Barmparas G, Jay J, Sun BJ, Chen E, Mehrzadi D, Patel B, Mason R, Ley EJ.

J Trauma Acute Care Surg. 2016 Aug;81(2):352-7. doi: 10.1097/TA.0000000000001105.


Insulin regimens, diabetes knowledge, quality of life, and HbA1c in children and adolescents with type 1 diabetes.

Keller M, Attia R, Beltrand J, Djadi-Prat J, Nguyen-Khoa T, Jay JP, Cahané M, Choleau C, Robert JJ.

Pediatr Diabetes. 2017 Aug;18(5):340-347. doi: 10.1111/pedi.12397. Epub 2016 May 10.


Virulence Genes among Enterococcus faecalis and Enterococcus faecium Isolated from Coastal Beaches and Human and Nonhuman Sources in Southern California and Puerto Rico.

Ferguson DM, Talavera GN, Hernández LA, Weisberg SB, Ambrose RF, Jay JA.

J Pathog. 2016;2016:3437214. doi: 10.1155/2016/3437214. Epub 2016 Apr 10.


Enterococcus growth on eelgrass (Zostera marina); implications for water quality.

Ferguson DM, Weisberg SB, Hagedorn C, De Leon K, Mofidi V, Wolfe J, Zimmerman M, Jay JA.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw047. doi: 10.1093/femsec/fiw047. Epub 2016 Mar 13.


Cross-Species Integrative Functional Genomics in GeneWeaver Reveals a Role for Pafah1b1 in Altered Response to Alcohol.

Bubier JA, Wilcox TD, Jay JJ, Langston MA, Baker EJ, Chesler EJ.

Front Behav Neurosci. 2016 Jan 21;10:1. doi: 10.3389/fnbeh.2016.00001. eCollection 2016.


EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.

Janies DA, Witter Z, Linchangco GV, Foltz DW, Miller AK, Kerr AM, Jay J, Reid RW, Wray GA.

BMC Bioinformatics. 2016 Jan 22;17:48. doi: 10.1186/s12859-016-0883-2.


AIDS and universal health coverage--stronger together.

Buse K, Jay J, Odetoyinbo M.

Lancet Glob Health. 2016 Jan;4(1):e10-1. doi: 10.1016/S2214-109X(15)00273-9. Epub 2015 Dec 1. No abstract available.


Sources of Mercury Exposure to Children in Low- and Middle-Income Countries.

Kampalath RA, Jay JA.

J Health Pollut. 2015 Jul 2;5(8):33-51. doi: 10.5696/i2156-9614-5-8.33. eCollection 2015 Jun. Review.


Profile of select hepatic insulin signaling pathway genes in response to 2-aminoanthracene dietary ingestion.

Mattis ND, Jay JW, Barnett GW, Rosaldo JJ, Howerth EW, Means JC, Gato WE.

J Biol Regul Homeost Agents. 2014 Oct-Dec;28(4):693-704.


Long-term monitoring of molecular markers can distinguish different seasonal patterns of fecal indicating bacteria sources.

Riedel TE, Thulsiraj V, Zimmer-Faust AG, Dagit R, Krug J, Hanley KT, Adamek K, Ebentier DL, Torres R, Cobian U, Peterson S, Jay JA.

Water Res. 2015 Mar 15;71:227-43. doi: 10.1016/j.watres.2014.12.037. Epub 2014 Dec 30.


JAK2 tyrosine kinase phosphorylates and is negatively regulated by centrosomal protein Ninein.

Jay J, Hammer A, Nestor-Kalinoski A, Diakonova M.

Mol Cell Biol. 2015 Jan;35(1):111-31. doi: 10.1128/MCB.01138-14. Epub 2014 Oct 20.


Identification of a QTL in Mus musculus for alcohol preference, withdrawal, and Ap3m2 expression using integrative functional genomics and precision genetics.

Bubier JA, Jay JJ, Baker CL, Bergeson SE, Ohno H, Metten P, Crabbe JC, Chesler EJ.

Genetics. 2014 Aug;197(4):1377-93. doi: 10.1534/genetics.114.166165. Epub 2014 Jun 11.


Transformation of HIV from pandemic to low-endemic levels: a public health approach to combination prevention.

Jones A, Cremin I, Abdullah F, Idoko J, Cherutich P, Kilonzo N, Rees H, Hallett T, O'Reilly K, Koechlin F, Schwartlander B, de Zalduondo B, Kim S, Jay J, Huh J, Piot P, Dybul M.

Lancet. 2014 Jul 19;384(9939):272-9. doi: 10.1016/S0140-6736(13)62230-8. Epub 2014 Apr 14.


Detection limits and cost comparisons of human- and gull-associated conventional and quantitative PCR assays in artificial and environmental waters.

Riedel TE, Zimmer-Faust AG, Thulsiraj V, Madi T, Hanley KT, Ebentier DL, Byappanahalli M, Layton B, Raith M, Boehm AB, Griffith JF, Holden PA, Shanks OC, Weisberg SB, Jay JA.

J Environ Manage. 2014 Apr 1;136:112-20. doi: 10.1016/j.jenvman.2014.01.029. Epub 2014 Feb 26.


Effect of recurrent yohimbine on immediate and post-hoc behaviors, stress hormones, and energy homeostatic parameters.

Figlewicz DP, Hill SR, Jay JL, West CH, Zavosh AS, Sipols AJ.

Physiol Behav. 2014 Apr 22;129:186-93. doi: 10.1016/j.physbeh.2014.02.019. Epub 2014 Feb 22.


Performance and specificity of the covalently linked immunomagnetic separation-ATP method for rapid detection and enumeration of enterococci in coastal environments.

Zimmer-Faust AG, Thulsiraj V, Ferguson D, Jay JA.

Appl Environ Microbiol. 2014 May;80(9):2705-14. doi: 10.1128/AEM.04096-13. Epub 2014 Feb 21.


Improving women's health through universal health coverage.

Quick J, Jay J, Langer A.

PLoS Med. 2014 Jan;11(1):e1001580. doi: 10.1371/journal.pmed.1001580. Epub 2014 Jan 6.


Natural history of anal human papillomavirus infection in heterosexual women and risks associated with persistence.

Moscicki AB, Ma Y, Farhat S, Jay J, Hanson E, Benningfield S, Jonte J, Godwin-Medina C, Wilson R, Shiboski S.

Clin Infect Dis. 2014 Mar;58(6):804-11. doi: 10.1093/cid/cit947. Epub 2013 Dec 23.


Beyond prevention of mother-to-child transmission: keeping HIV-exposed and HIV-positive children healthy and alive.

Kellerman SE, Ahmed S, Feeley-Summerl T, Jay J, Kim M, Phelps BR, Sugandhi N, Schouten E, Tolle M, Tsiouris F; Child Survival Working Group of the Interagency Task Team on the Prevention and Treatment of HIV infection in Pregnant Women, Mothers and Children.

AIDS. 2013 Nov;27 Suppl 2:S225-33. doi: 10.1097/QAD.0000000000000107. Review.

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