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Items: 18

1.

Impact of the severity of negative energy balance on gene expression in the subcutaneous adipose tissue of periparturient primiparous Holstein dairy cows: Identification of potential novel metabolic signals for the reproductive system.

Mellouk N, Rame C, Naquin D, Jaszczyszyn Y, Touzé JL, Briant E, Guillaume D, Ntallaris T, Humblot P, Dupont J.

PLoS One. 2019 Sep 26;14(9):e0222954. doi: 10.1371/journal.pone.0222954. eCollection 2019.

2.

Differentiation of derived rabbit trophoblast stem cells under fluid shear stress to mimic the trophoblastic barrier.

Sanz G, Daniel N, Aubrière MC, Archilla C, Jouneau L, Jaszczyszyn Y, Duranthon V, Chavatte-Palmer P, Jouneau A.

Biochim Biophys Acta Gen Subj. 2019 Oct;1863(10):1608-1618. doi: 10.1016/j.bbagen.2019.07.003. Epub 2019 Jul 3.

PMID:
31278960
3.

Evaluating and Correcting Inherent Bias of microRNA Expression in Illumina Sequencing Analysis.

Baroin-Tourancheau A, Jaszczyszyn Y, Benigni X, Amar L.

Front Mol Biosci. 2019 Apr 24;6:17. doi: 10.3389/fmolb.2019.00017. eCollection 2019.

4.

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.

Wu X, Kabalane H, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer-Satta V, Arneodo A, Audit B, Hyrien O.

Nucleic Acids Res. 2018 Nov 2;46(19):10532. doi: 10.1093/nar/gky849. No abstract available.

5.

Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions.

Wu X, Kabalane H, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer-Satta V, Arneodo A, Audit B, Hyrien O.

Nucleic Acids Res. 2018 Nov 2;46(19):10157-10172. doi: 10.1093/nar/gky797. Erratum in: Nucleic Acids Res. 2018 Nov 2;46(19):10532.

6.

Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.

Tubbs A, Sridharan S, van Wietmarschen N, Maman Y, Callen E, Stanlie A, Wu W, Wu X, Day A, Wong N, Yin M, Canela A, Fu H, Redon C, Pruitt SC, Jaszczyszyn Y, Aladjem MI, Aplan PD, Hyrien O, Nussenzweig A.

Cell. 2018 Aug 23;174(5):1127-1142.e19. doi: 10.1016/j.cell.2018.07.011. Epub 2018 Aug 2.

7.

The Third Revolution in Sequencing Technology.

van Dijk EL, Jaszczyszyn Y, Naquin D, Thermes C.

Trends Genet. 2018 Sep;34(9):666-681. doi: 10.1016/j.tig.2018.05.008. Epub 2018 Jun 22. Review.

PMID:
29941292
8.

The evolution of the temporal program of genome replication.

Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino-Lagomarsino M, Fischer G.

Nat Commun. 2018 Jun 6;9(1):2199. doi: 10.1038/s41467-018-04628-4.

9.

Holistic and Affordable Analyses of MicroRNA Expression Profiles Using Tagged cDNA Libraries and a Multiplex Sequencing Strategy.

Weil PP, Jaszczyszyn Y, Baroin-Tourancheau A, Postberg J, Amar L.

Methods Mol Biol. 2017;1654:179-196. doi: 10.1007/978-1-4939-7231-9_12.

PMID:
28986790
10.

Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial-Type Gene Expression Profile.

Dambroise E, Simion M, Bourquard T, Bouffard S, Rizzi B, Jaszczyszyn Y, Bourge M, Affaticati P, Heuzé A, Jouralet J, Edouard J, Brown S, Thermes C, Poupon A, Reiter E, Sohm F, Bourrat F, Joly JS.

Stem Cells. 2017 Jun;35(6):1505-1518. doi: 10.1002/stem.2588. Epub 2017 Mar 14.

11.

Finding sRNA-associated phenotypes by competition assays: An example with Staphylococcus aureus.

Le Lam TN, Morvan C, Liu W, Bohn C, Jaszczyszyn Y, Bouloc P.

Methods. 2017 Mar 15;117:21-27. doi: 10.1016/j.ymeth.2016.11.018. Epub 2016 Dec 2.

PMID:
27916561
12.

Replication landscape of the human genome.

Petryk N, Kahli M, d'Aubenton-Carafa Y, Jaszczyszyn Y, Shen Y, Silvain M, Thermes C, Chen CL, Hyrien O.

Nat Commun. 2016 Jan 11;7:10208. doi: 10.1038/ncomms10208.

13.

DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity.

Naughtin M, Haftek-Terreau Z, Xavier J, Meyer S, Silvain M, Jaszczyszyn Y, Levy N, Miele V, Benleulmi MS, Ruff M, Parissi V, Vaillant C, Lavigne M.

PLoS One. 2015 Jun 15;10(6):e0129427. doi: 10.1371/journal.pone.0129427. eCollection 2015.

14.

Ten years of next-generation sequencing technology.

van Dijk EL, Auger H, Jaszczyszyn Y, Thermes C.

Trends Genet. 2014 Sep;30(9):418-26. doi: 10.1016/j.tig.2014.07.001. Epub 2014 Aug 6. Review.

PMID:
25108476
15.

Library preparation methods for next-generation sequencing: tone down the bias.

van Dijk EL, Jaszczyszyn Y, Thermes C.

Exp Cell Res. 2014 Mar 10;322(1):12-20. doi: 10.1016/j.yexcr.2014.01.008. Epub 2014 Jan 15. Review.

PMID:
24440557
16.

A cis-regulatory signature for chordate anterior neuroectodermal genes.

Haeussler M, Jaszczyszyn Y, Christiaen L, Joly JS.

PLoS Genet. 2010 Apr 15;6(4):e1000912. doi: 10.1371/journal.pgen.1000912.

17.

Evolutionary modification of mouth position in deuterostomes.

Christiaen L, Jaszczyszyn Y, Kerfant M, Kano S, Thermes V, Joly JS.

Semin Cell Dev Biol. 2007 Aug;18(4):502-11. Epub 2007 Jun 15. Review.

PMID:
17656139
18.

Comparison of the expression of medaka (Oryzias latipes) pitx genes with other vertebrates shows high conservation and a case of functional shuffling in the pituitary.

Jaszczyszyn Y, Haeussler M, Heuzé A, Debiais-Thibaud M, Casane D, Bourrat F, Joly JS.

Gene. 2007 Dec 30;406(1-2):42-50. Epub 2007 Jun 13.

PMID:
17656043

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