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Items: 45

1.

Processivity, Velocity, and Universal Characteristics of Nucleic Acid Unwinding by Helicases.

Chakrabarti S, Jarzynski C, Thirumalai D.

Biophys J. 2019 Sep 3;117(5):867-879. doi: 10.1016/j.bpj.2019.07.021. Epub 2019 Jul 20.

PMID:
31400912
2.

Quantifying dissipation in actomyosin networks.

Floyd C, Papoian GA, Jarzynski C.

Interface Focus. 2019 Jun 6;9(3):20180078. doi: 10.1098/rsfs.2018.0078. Epub 2019 Apr 19.

3.

Optimal Probabilistic Work Extraction beyond the Free Energy Difference with a Single-Electron Device.

Maillet O, Erdman PA, Cavina V, Bhandari B, Mannila ET, Peltonen JT, Mari A, Taddei F, Jarzynski C, Giovannetti V, Pekola JP.

Phys Rev Lett. 2019 Apr 19;122(15):150604. doi: 10.1103/PhysRevLett.122.150604.

PMID:
31050528
4.

Nonconservative Forces via Quantum Reservoir Engineering.

Vuglar SL, Zhdanov DV, Cabrera R, Seideman T, Jarzynski C, Bondar DI.

Phys Rev Lett. 2018 Jun 8;120(23):230404. doi: 10.1103/PhysRevLett.120.230404.

PMID:
29932691
5.

Fast forward to the classical adiabatic invariant.

Jarzynski C, Deffner S, Patra A, Subaşı Y.

Phys Rev E. 2017 Mar;95(3-1):032122. doi: 10.1103/PhysRevE.95.032122. Epub 2017 Mar 10.

PMID:
28415339
6.

Classical and Quantum Shortcuts to Adiabaticity in a Tilted Piston.

Patra A, Jarzynski C.

J Phys Chem B. 2017 Apr 20;121(15):3403-3411. doi: 10.1021/acs.jpcb.6b08769. Epub 2016 Oct 12.

PMID:
27700088
7.

Number of trials required to estimate a free-energy difference, using fluctuation relations.

Yunger Halpern N, Jarzynski C.

Phys Rev E. 2016 May;93(5):052144. doi: 10.1103/PhysRevE.93.052144. Epub 2016 May 26.

PMID:
27300866
8.

Conditional reversibility in nonequilibrium stochastic systems.

Bonança MV, Jarzynski C.

Phys Rev E. 2016 Feb;93(2):022101. doi: 10.1103/PhysRevE.93.022101. Epub 2016 Feb 1.

PMID:
26986282
9.

Universal energy diffusion in a quivering billiard.

Demers J, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Oct;92(4):042911. doi: 10.1103/PhysRevE.92.042911. Epub 2015 Oct 8.

PMID:
26565308
10.

Apparent topologically forbidden interchange of energy surfaces under slow variation of a Hamiltonian.

Lu Z, Jarzynski C, Ott E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 May;91(5):052913. Epub 2015 May 15.

PMID:
26066235
11.

Second laws for an information driven current through a spin valve.

Strasberg P, Schaller G, Brandes T, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062107. Epub 2014 Dec 1.

PMID:
25615044
12.

Microcanonical work and fluctuation relations for an open system: An exactly solvable model.

Subaşı Y, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Oct;88(4):042136. Epub 2013 Oct 24.

PMID:
24229144
13.

Maxwell's refrigerator: an exactly solvable model.

Mandal D, Quan HT, Jarzynski C.

Phys Rev Lett. 2013 Jul 19;111(3):030602. Epub 2013 Jul 19.

PMID:
23909304
14.

Hybrid models of molecular machines and the no-pumping theorem.

Mandal D, Jarzynski C.

J Chem Phys. 2012 Dec 21;137(23):234104. doi: 10.1063/1.4771657.

PMID:
23267468
15.

Work and information processing in a solvable model of Maxwell's demon.

Mandal D, Jarzynski C.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11641-5. doi: 10.1073/pnas.1204263109. Epub 2012 Jul 2.

16.

Replica exchange with nonequilibrium switches: enhancing equilibrium sampling by increasing replica overlap.

Ballard AJ, Jarzynski C.

J Chem Phys. 2012 May 21;136(19):194101. doi: 10.1063/1.4712028.

PMID:
22612074
17.

Validity of nonequilibrium work relations for the rapidly expanding quantum piston.

Quan HT, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Mar;85(3 Pt 1):031102. Epub 2012 Mar 1.

PMID:
22587033
18.

Modeling Maxwell's demon with a microcanonical Szilard engine.

Vaikuntanathan S, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jun;83(6 Pt 1):061120. Epub 2011 Jun 15.

PMID:
21797315
19.

Escorted free energy simulations.

Vaikuntanathan S, Jarzynski C.

J Chem Phys. 2011 Feb 7;134(5):054107. doi: 10.1063/1.3544679.

PMID:
21303092
20.

Good practices in free-energy calculations.

Pohorille A, Jarzynski C, Chipot C.

J Phys Chem B. 2010 Aug 19;114(32):10235-53. doi: 10.1021/jp102971x.

PMID:
20701361
21.

Replica exchange with nonequilibrium switches.

Ballard AJ, Jarzynski C.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12224-9. doi: 10.1073/pnas.0900406106. Epub 2009 Jul 10.

22.

Illustrative example of the relationship between dissipation and relative entropy.

Horowitz J, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Feb;79(2 Pt 1):021106. Epub 2009 Feb 5.

PMID:
19391705
23.

Comment on "Failure of the work-Hamiltonian connection for free-energy calculations".

Horowitz J, Jarzynski C.

Phys Rev Lett. 2008 Aug 29;101(9):098901; author reply 098902. Epub 2008 Aug 26. No abstract available.

PMID:
18851665
24.

Directed flow in nonadiabatic stochastic pumps.

Rahav S, Horowitz J, Jarzynski C.

Phys Rev Lett. 2008 Oct 3;101(14):140602. Epub 2008 Oct 2.

PMID:
18851514
25.

Binless estimation of the potential of mean force.

Basner JE, Jarzynski C.

J Phys Chem B. 2008 Oct 9;112(40):12722-9. doi: 10.1021/jp803635e. Epub 2008 Sep 13.

PMID:
18793024
26.

The thermodynamics of writing a random polymer.

Jarzynski C.

Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9451-2. doi: 10.1073/pnas.0805209105. Epub 2008 Jul 7. No abstract available.

27.

Escorted free energy simulations: improving convergence by reducing dissipation.

Vaikuntanathan S, Jarzynski C.

Phys Rev Lett. 2008 May 16;100(19):190601. Epub 2008 May 15.

PMID:
18518431
28.

Work distribution for the adiabatic compression of a dilute and interacting classical gas.

Crooks GE, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 1):021116. Epub 2007 Feb 20.

PMID:
17358322
29.

Rare events and the convergence of exponentially averaged work values.

Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Apr;73(4 Pt 2):046105. Epub 2006 Apr 5.

PMID:
16711876
30.

Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies.

Collin D, Ritort F, Jarzynski C, Smith SB, Tinoco I Jr, Bustamante C.

Nature. 2005 Sep 8;437(7056):231-4.

31.

Dynamical generalization of nonequilibrium work relation.

Chernyak V, Chertkov M, Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Feb;71(2 Pt 2):025102. Epub 2005 Feb 17.

PMID:
15783364
32.

Unbiased estimators for spatial distribution functions of classical fluids.

Adib AB, Jarzynski C.

J Chem Phys. 2005 Jan 1;122(1):14114.

PMID:
15638649
33.

Experimental test of Hatano and Sasa's nonequilibrium steady-state equality.

Trepagnier EH, Jarzynski C, Ritort F, Crooks GE, Bustamante CJ, Liphardt J.

Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15038-41. Epub 2004 Oct 6.

34.

Classical and quantum fluctuation theorems for heat exchange.

Jarzynski C, Wójcik DK.

Phys Rev Lett. 2004 Jun 11;92(23):230602. Epub 2004 Jun 11.

PMID:
15245147
35.

Targeted free energy perturbation.

Jarzynski C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Apr;65(4 Pt 2A):046122. Epub 2002 Apr 3.

PMID:
12005941
36.

Feynman's ratchet and pawl: an exactly solvable model.

Jarzynski C, Mazonka O.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Jun;59(6):6448-59.

PMID:
11969630
37.

How does a system respond when driven away from thermal equilibrium?

Jarzynski C.

Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3636-8. No abstract available.

38.

Numerical convergence in solving the Vlasov equation.

Jarzynski C, Bertsch GF.

Phys Rev C Nucl Phys. 1996 Feb;53(2):1028-1031. No abstract available.

PMID:
9971029
39.

Evidence for the possible synthesis of element 110 produced by the 59Co+209Bi reaction.

Ghiorso A, Lee D, Somerville LP, Loveland W, Nitschke JM, Ghiorso W, Seaborg GT, Wilmarth P, Leres R, Wydler A, Nurmia M, Gregorich K, Czerwinski K, Gaylord R, Hamilton T, Hannink NJ, Hoffman DC, Jarzynski C, Kacher C, Kadkhodayan B, Kreek S, Lane M, Lyon A, McMahan MA, Neu M, Sikkeland T, Swiatecki WJ, Türler A, Walton JT, Yashita S.

Phys Rev C Nucl Phys. 1995 May;51(5):R2293-R2297. No abstract available.

PMID:
9970386
40.

Thermalization of a Brownian particle via coupling to low-dimensional chaos.

Jarzynski C.

Phys Rev Lett. 1995 Apr 10;74(15):2937-2940. No abstract available.

PMID:
10058062
41.

Geometric phases and anholonomy for a class of chaotic classical systems.

Jarzynski C.

Phys Rev Lett. 1995 Mar 6;74(10):1732-1735. No abstract available.

PMID:
10057743
42.

Geometric phase effects for wave-packet revivals.

Jarzynski C.

Phys Rev Lett. 1995 Feb 20;74(8):1264-1267. No abstract available.

PMID:
10058976
43.

Energy diffusion in a chaotic adiabatic billiard gas.

Jarzynski C.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Dec;48(6):4340-4350. No abstract available.

PMID:
9961115
44.

Multiple-time-scale approach to ergodic adiabatic systems: Another look.

Jarzynski C.

Phys Rev Lett. 1993 Aug 9;71(6):839-842. No abstract available.

PMID:
10055381
45.

Diffusion equation for energy in ergodic adiabatic ensembles.

Jarzynski C.

Phys Rev A. 1992 Dec 15;46(12):7498-7509. No abstract available.

PMID:
9908101

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