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Items: 1 to 50 of 75

1.

miRNA Detection by Stem-Loop RT-qPCR in Studying microRNA Biogenesis and microRNA Responsiveness to Abiotic Stresses.

Smoczynska A, Sega P, Stepien A, Knop K, Jarmolowski A, Pacak A, Szweykowska-Kulinska Z.

Methods Mol Biol. 2019;1932:131-150. doi: 10.1007/978-1-4939-9042-9_10.

PMID:
30701497
2.

Novel Nuclear Functions of Arabidopsis ARGONAUTE1: Beyond RNA Interference.

Bajczyk M, Bhat SS, Szewc L, Szweykowska-Kulinska Z, Jarmolowski A, Dolata J.

Plant Physiol. 2019 Mar;179(3):1030-1039. doi: 10.1104/pp.18.01351. Epub 2019 Jan 3. Review. No abstract available.

3.

N⁶-methyladenosine (m⁶A): Revisiting the Old with Focus on New, an Arabidopsis thaliana Centered Review.

Bhat SS, Bielewicz D, Jarmolowski A, Szweykowska-Kulinska Z.

Genes (Basel). 2018 Nov 30;9(12). pii: E596. doi: 10.3390/genes9120596. Review.

4.

Post-transcriptional Regulation of MicroRNA Accumulation and Function: New Insights from Plants.

Szweykowska-Kulinska Z, Jarmolowski A.

Mol Plant. 2018 Aug 6;11(8):1006-1007. doi: 10.1016/j.molp.2018.06.010. Epub 2018 Jul 7. No abstract available.

5.

Regulation of Plant Microprocessor Function in Shaping microRNA Landscape.

Dolata J, Taube M, Bajczyk M, Jarmolowski A, Szweykowska-Kulinska Z, Bielewicz D.

Front Plant Sci. 2018 Jun 5;9:753. doi: 10.3389/fpls.2018.00753. eCollection 2018. Review.

6.

A Role of U12 Intron in Proper Pre-mRNA Splicing of Plant Cap Binding Protein 20 Genes.

Pieczynski M, Kruszka K, Bielewicz D, Dolata J, Szczesniak M, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

Front Plant Sci. 2018 Apr 16;9:475. doi: 10.3389/fpls.2018.00475. eCollection 2018.

7.

A stable tRNA-like molecule is generated from the long noncoding RNA GUT15 in Arabidopsis.

Plewka P, Thompson A, Szymanski M, Nuc P, Knop K, Rasinska A, Bialkowska A, Szweykowska-Kulinska Z, Karlowski WM, Jarmolowski A.

RNA Biol. 2018;15(6):726-738. doi: 10.1080/15476286.2018.1445404. Epub 2018 Mar 21.

8.

tRex: A Web Portal for Exploration of tRNA-Derived Fragments in Arabidopsis thaliana.

Thompson A, Zielezinski A, Plewka P, Szymanski M, Nuc P, Szweykowska-Kulinska Z, Jarmolowski A, Karlowski WM.

Plant Cell Physiol. 2018 Jan 1;59(1):e1. doi: 10.1093/pcp/pcx173.

PMID:
29145635
9.

Alternative Polyadenylation of the Sense Transcript Controls Antisense Transcription of DELAY OF GERMINATION 1 in Arabidopsis.

Kowalczyk J, Palusinska M, Wroblewska-Swiniarska A, Pietras Z, Szewc L, Dolata J, Jarmolowski A, Swiezewski S.

Mol Plant. 2017 Oct 9;10(10):1349-1352. doi: 10.1016/j.molp.2017.07.011. Epub 2017 Aug 3. No abstract available.

10.

Genomewide identification of genes involved in the potato response to drought indicates functional evolutionary conservation with Arabidopsis plants.

Pieczynski M, Wyrzykowska A, Milanowska K, Boguszewska-Mankowska D, Zagdanska B, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

Plant Biotechnol J. 2018 Feb;16(2):603-614. doi: 10.1111/pbi.12800. Epub 2017 Aug 14.

11.

MicroRNAs Are Intensively Regulated during Induction of Somatic Embryogenesis in Arabidopsis.

Szyrajew K, Bielewicz D, Dolata J, Wójcik AM, Nowak K, Szczygieł-Sommer A, Szweykowska-Kulinska Z, Jarmolowski A, Gaj MD.

Front Plant Sci. 2017 Jan 23;8:18. doi: 10.3389/fpls.2017.00018. eCollection 2017.

12.

Active 5' splice sites regulate the biogenesis efficiency of Arabidopsis microRNAs derived from intron-containing genes.

Knop K, Stepien A, Barciszewska-Pacak M, Taube M, Bielewicz D, Michalak M, Borst JW, Jarmolowski A, Szweykowska-Kulinska Z.

Nucleic Acids Res. 2016 Oct 5. pii: gkw895. [Epub ahead of print]

13.

MicroRNA biogenesis: Epigenetic modifications as another layer of complexity in the microRNA expression regulation.

Bhat SS, Jarmolowski A, Szweykowska-Kulińska Z.

Acta Biochim Pol. 2016;63(4):717-723. doi: 10.18388/abp.2016_1370. Epub 2016 Nov 22. Review.

14.

Posttranscriptional coordination of splicing and miRNA biogenesis in plants.

Stepien A, Knop K, Dolata J, Taube M, Bajczyk M, Barciszewska-Pacak M, Pacak A, Jarmolowski A, Szweykowska-Kulinska Z.

Wiley Interdiscip Rev RNA. 2017 May;8(3). doi: 10.1002/wrna.1403. Epub 2016 Nov 9. Review.

PMID:
27863087
15.

Developmental changes in barley microRNA expression profiles coupled with miRNA target analysis.

Pacak A, Kruszka K, Swida-Barteczka A, Nuc P, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

Acta Biochim Pol. 2016;63(4):799-809. doi: 10.18388/abp.2016_1347. Epub 2016 Nov 2.

16.

Barley primary microRNA expression pattern is affected by soil water availability.

Swida-Barteczka A, Kruszka K, Grabowska A, Pacak A, Jarmolowski A, Kurowska M, Szarejko I, Szweykowska-Kulinska Z.

Acta Biochim Pol. 2016;63(4):817-824. doi: 10.18388/abp.2016_1352. Epub 2016 Oct 21.

17.

Arabidopsis thaliana microRNA162 level is posttranscriptionally regulated via splicing and polyadenylation site selection.

Barciszewska-Pacak M, Knop K, Jarmołowski A, Szweykowska-Kulińska Z.

Acta Biochim Pol. 2016;63(4):811-816. doi: 10.18388/abp.2016_1349. Epub 2016 Oct 5.

18.

Heat Stress Affects Pi-related Genes Expression and Inorganic Phosphate Deposition/Accumulation in Barley.

Pacak A, Barciszewska-Pacak M, Swida-Barteczka A, Kruszka K, Sega P, Milanowska K, Jakobsen I, Jarmolowski A, Szweykowska-Kulinska Z.

Front Plant Sci. 2016 Jun 24;7:926. doi: 10.3389/fpls.2016.00926. eCollection 2016.

19.

Salt Stress Reveals a New Role for ARGONAUTE1 in miRNA Biogenesis at the Transcriptional and Posttranscriptional Levels.

Dolata J, Bajczyk M, Bielewicz D, Niedojadlo K, Niedojadlo J, Pietrykowska H, Walczak W, Szweykowska-Kulinska Z, Jarmolowski A.

Plant Physiol. 2016 Sep;172(1):297-312. doi: 10.1104/pp.16.00830. Epub 2016 Jul 6.

20.

Virus-Induced Gene Silencing for Gene Function Studies in Barley.

Barciszewska-Pacak M, Jarmołowski A, Pacak A.

Methods Mol Biol. 2016;1398:293-308. doi: 10.1007/978-1-4939-3356-3_22.

PMID:
26867631
21.

Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.

Qu G, Kruszka K, Plewka P, Yang SY, Chiou TJ, Jarmolowski A, Szweykowska-Kulinska Z, Echeverria M, Karlowski WM.

BMC Genomics. 2015 Nov 25;16:1009. doi: 10.1186/s12864-015-2221-x.

22.

FUS/TLS contributes to replication-dependent histone gene expression by interaction with U7 snRNPs and histone-specific transcription factors.

Raczynska KD, Ruepp MD, Brzek A, Reber S, Romeo V, Rindlisbacher B, Heller M, Szweykowska-Kulinska Z, Jarmolowski A, Schümperli D.

Nucleic Acids Res. 2015 Nov 16;43(20):9711-28. doi: 10.1093/nar/gkv794. Epub 2015 Aug 6.

23.

mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs.

Zielezinski A, Dolata J, Alaba S, Kruszka K, Pacak A, Swida-Barteczka A, Knop K, Stepien A, Bielewicz D, Pietrykowska H, Sierocka I, Sobkowiak L, Lakomiak A, Jarmolowski A, Szweykowska-Kulinska Z, Karlowski WM.

BMC Plant Biol. 2015 Jun 16;15:144. doi: 10.1186/s12870-015-0533-2.

24.

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses.

Barciszewska-Pacak M, Milanowska K, Knop K, Bielewicz D, Nuc P, Plewka P, Pacak AM, Vazquez F, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

Front Plant Sci. 2015 Jun 4;6:410. doi: 10.3389/fpls.2015.00410. eCollection 2015.

25.

NTR1 is required for transcription elongation checkpoints at alternative exons in Arabidopsis.

Dolata J, Guo Y, Kołowerzo A, Smoliński D, Brzyżek G, Jarmołowski A, Świeżewski S.

EMBO J. 2015 Feb 12;34(4):544-58. doi: 10.15252/embj.201489478. Epub 2015 Jan 7.

26.

The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants.

Alaba S, Piszczalka P, Pietrykowska H, Pacak AM, Sierocka I, Nuc PW, Singh K, Plewka P, Sulkowska A, Jarmolowski A, Karlowski WM, Szweykowska-Kulinska Z.

New Phytol. 2015 Apr;206(1):352-67. doi: 10.1111/nph.13220. Epub 2014 Dec 19.

27.

Transcriptionally and post-transcriptionally regulated microRNAs in heat stress response in barley.

Kruszka K, Pacak A, Swida-Barteczka A, Nuc P, Alaba S, Wroblewska Z, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

J Exp Bot. 2014 Nov;65(20):6123-35. doi: 10.1093/jxb/eru353. Epub 2014 Sep 2.

28.

Female-specific gene expression in dioecious liverwort Pellia endiviifolia is developmentally regulated and connected to archegonia production.

Sierocka I, Kozlowski LP, Bujnicki JM, Jarmolowski A, Szweykowska-Kulinska Z.

BMC Plant Biol. 2014 Jun 17;14:168. doi: 10.1186/1471-2229-14-168.

29.

miR393 is required for production of proper auxin signalling outputs.

Windels D, Bielewicz D, Ebneter M, Jarmolowski A, Szweykowska-Kulinska Z, Vazquez F.

PLoS One. 2014 Apr 24;9(4):e95972. doi: 10.1371/journal.pone.0095972. eCollection 2014.

30.

Low-resolution structure of the full-length barley (Hordeum vulgare) SGT1 protein in solution, obtained using small-angle X-ray scattering.

Taube M, Pieńkowska JR, Jarmołowski A, Kozak M.

PLoS One. 2014 Apr 8;9(4):e93313. doi: 10.1371/journal.pone.0093313. eCollection 2014.

31.

The crosstalk between plant microRNA biogenesis factors and the spliceosome.

Szweykowska-Kulińska Z, Jarmolowski A, Vazquez F.

Plant Signal Behav. 2013 Nov;8(11):e26955. doi: 10.4161/psb.26955. Epub 2013 Dec 3. Review.

32.

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.

Raczynska KD, Stepien A, Kierzkowski D, Kalak M, Bajczyk M, McNicol J, Simpson CG, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A.

Nucleic Acids Res. 2014 Jan;42(2):1224-44. doi: 10.1093/nar/gkt894. Epub 2013 Oct 16.

33.

Introns of plant pri-miRNAs enhance miRNA biogenesis.

Bielewicz D, Kalak M, Kalyna M, Windels D, Barta A, Vazquez F, Szweykowska-Kulinska Z, Jarmolowski A.

EMBO Rep. 2013 Jul;14(7):622-8. doi: 10.1038/embor.2013.62. Epub 2013 May 17.

34.

Developmentally regulated expression and complex processing of barley pri-microRNAs.

Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

BMC Genomics. 2013 Jan 16;14:34. doi: 10.1186/1471-2164-14-34.

35.

Down-regulation of CBP80 gene expression as a strategy to engineer a drought-tolerant potato.

Pieczynski M, Marczewski W, Hennig J, Dolata J, Bielewicz D, Piontek P, Wyrzykowska A, Krusiewicz D, Strzelczyk-Zyta D, Konopka-Postupolska D, Krzeslowska M, Jarmolowski A, Szweykowska-Kulinska Z.

Plant Biotechnol J. 2013 May;11(4):459-69. doi: 10.1111/pbi.12032. Epub 2012 Dec 11.

36.

Arabidopsis suppressor mutant of abh1 shows a new face of the already known players: ABH1 (CBP80) and ABI4-in response to ABA and abiotic stresses during seed germination.

Daszkowska-Golec A, Wojnar W, Rosikiewicz M, Szarejko I, Maluszynski M, Szweykowska-Kulinska Z, Jarmolowski A.

Plant Mol Biol. 2013 Jan;81(1-2):189-209. doi: 10.1007/s11103-012-9991-1. Epub 2012 Nov 30.

37.

Role of microRNAs and other sRNAs of plants in their changing environments.

Kruszka K, Pieczynski M, Windels D, Bielewicz D, Jarmolowski A, Szweykowska-Kulinska Z, Vazquez F.

J Plant Physiol. 2012 Nov 1;169(16):1664-72. doi: 10.1016/j.jplph.2012.03.009. Epub 2012 May 28. Review.

PMID:
22647959
38.

Non-Canonical Processing of Arabidopsis pri-miR319a/b/c Generates Additional microRNAs to Target One RAP2.12 mRNA Isoform.

Sobkowiak L, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

Front Plant Sci. 2012 Mar 19;3:46. doi: 10.3389/fpls.2012.00046. eCollection 2012.

39.

mirEX: a platform for comparative exploration of plant pri-miRNA expression data.

Bielewicz D, Dolata J, Zielezinski A, Alaba S, Szarzynska B, Szczesniak MW, Jarmolowski A, Szweykowska-Kulinska Z, Karlowski WM.

Nucleic Acids Res. 2012 Jan;40(Database issue):D191-7. doi: 10.1093/nar/gkr878. Epub 2011 Oct 19.

40.

Analysis of potyvirus terminal protein VPg-transgenic Arabidopsis thaliana plants.

Wojtal I, Piontek P, Grzela R, Jarmołowski A, Zagórski W, Chroboczek J.

Acta Biochim Pol. 2011;58(3):349-53. Epub 2011 Sep 13.

41.

Novel genes specifically expressed during the development of the male thalli and antheridia in the dioecious liverwort Pellia endiviifolia.

Sierocka I, Rojek A, Bielewicz D, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z.

Gene. 2011 Oct 1;485(1):53-62. doi: 10.1016/j.gene.2011.06.012. Epub 2011 Jun 25.

PMID:
21712080
42.

Regulation of plant gene expression by alternative splicing.

Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A, Brown JW.

Biochem Soc Trans. 2010 Apr;38(2):667-71. doi: 10.1042/BST0380667. Review.

PMID:
20298240
43.

Evolutionary dynamics of U12-type spliceosomal introns.

Lin CF, Mount SM, Jarmołowski A, Makałowski W.

BMC Evol Biol. 2010 Feb 17;10:47. doi: 10.1186/1471-2148-10-47.

44.

The brome mosaic virus-based recombination vector triggers a limited gene silencing response depending on the orientation of the inserted sequence.

Pacak A, Strozycki PM, Barciszewska-Pacak M, Alejska M, Lacomme C, Jarmołowski A, Szweykowska-Kulińska Z, Figlerowicz M.

Arch Virol. 2010 Feb;155(2):169-79. doi: 10.1007/s00705-009-0556-9. Epub 2009 Nov 25.

PMID:
19937458
45.

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.

Raczynska KD, Simpson CG, Ciesiolka A, Szewc L, Lewandowska D, McNicol J, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A.

Nucleic Acids Res. 2010 Jan;38(1):265-78. doi: 10.1093/nar/gkp869. Epub 2009 Oct 28.

46.

Selective recruitment of proteins to 5' cap complexes during the growth cycle in Arabidopsis.

Bush MS, Hutchins AP, Jones AM, Naldrett MJ, Jarmolowski A, Lloyd CW, Doonan JH.

Plant J. 2009 Aug;59(3):400-12. doi: 10.1111/j.1365-313X.2009.03882.x. Epub 2009 Mar 30.

47.

The Arabidopsis CBP20 targets the cap-binding complex to the nucleus, and is stabilized by CBP80.

Kierzkowski D, Kmieciak M, Piontek P, Wojtaszek P, Szweykowska-Kulinska Z, Jarmolowski A.

Plant J. 2009 Sep;59(5):814-25. doi: 10.1111/j.1365-313X.2009.03915.x. Epub 2009 May 12.

48.

Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs.

Szarzynska B, Sobkowiak L, Pant BD, Balazadeh S, Scheible WR, Mueller-Roeber B, Jarmolowski A, Szweykowska-Kulinska Z.

Nucleic Acids Res. 2009 May;37(9):3083-93. doi: 10.1093/nar/gkp189. Epub 2009 Mar 20.

49.

The nuclear cap-binding protein complex is not essential for nonsense-mediated mRNA decay (NMD) in plants.

Dzikiewicz-Krawczyk A, Piontek P, Szweykowska-Kulińska Z, Jarmołowski A.

Acta Biochim Pol. 2008;55(4):825-8. Epub 2008 Dec 16.

50.

Abscisic acid does not influence the subcellular distribution of the HYL1 protein from Arabidopsis thaliana.

Lesicka-Górecka J, Szarzyńska B, Sawczak M, Bagdiul I, Górski P, Jarmołowski A, Szweykowska-Kulińska Z.

Acta Biochim Pol. 2008;55(3):517-24. Epub 2008 Aug 20.

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