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Items: 27

1.

Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.

Mäder U, Nicolas P, Depke M, Pané-Farré J, Debarbouille M, van der Kooi-Pol MM, Guérin C, Dérozier S, Hiron A, Jarmer H, Leduc A, Michalik S, Reilman E, Schaffer M, Schmidt F, Bessières P, Noirot P, Hecker M, Msadek T, Völker U, van Dijl JM.

PLoS Genet. 2016 Apr 1;12(4):e1005962. doi: 10.1371/journal.pgen.1005962. eCollection 2016 Apr.

2.

Testing the Utility of a Data-Driven Approach for Assessing BMI from Face Images.

Wolffhechel K, Hahn AC, Jarmer H, Fisher CI, Jones BC, DeBruine LM.

PLoS One. 2015 Oct 13;10(10):e0140347. doi: 10.1371/journal.pone.0140347. eCollection 2015.

3.

Predicting facial characteristics from complex polygenic variations.

Fagertun J, Wolffhechel K, Pers TH, Nielsen HB, Gudbjartsson D, Stefansson H, Stefansson K, Paulsen RR, Jarmer H.

Forensic Sci Int Genet. 2015 Nov;19:263-268. doi: 10.1016/j.fsigen.2015.08.004. Epub 2015 Aug 17.

PMID:
26355663
4.

Interpretation of appearance: the effect of facial features on first impressions and personality.

Wolffhechel K, Fagertun J, Jacobsen UP, Majewski W, Hemmingsen AS, Larsen CL, Lorentzen SK, Jarmer H.

PLoS One. 2014 Sep 18;9(9):e107721. doi: 10.1371/journal.pone.0107721. eCollection 2014.

5.

Improving biotech education through gamified laboratory simulations.

Bonde MT, Makransky G, Wandall J, Larsen MV, Morsing M, Jarmer H, Sommer MO.

Nat Biotechnol. 2014 Jul;32(7):694-7. doi: 10.1038/nbt.2955. No abstract available.

PMID:
25004234
6.

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.

Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P.

Science. 2012 Mar 2;335(6072):1103-6. doi: 10.1126/science.1206848.

7.

Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.

Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871.

8.

MicroRNA-130a-mediated down-regulation of Smad4 contributes to reduced sensitivity to TGF-β1 stimulation in granulocytic precursors.

Häger M, Pedersen CC, Larsen MT, Andersen MK, Hother C, Grønbæk K, Jarmer H, Borregaard N, Cowland JB.

Blood. 2011 Dec 15;118(25):6649-59. doi: 10.1182/blood-2011-03-339978. Epub 2011 Oct 25.

9.

Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection.

Hansen SK, Rau MH, Johansen HK, Ciofu O, Jelsbak L, Yang L, Folkesson A, Jarmer HØ, Aanæs K, von Buchwald C, Høiby N, Molin S.

ISME J. 2012 Jan;6(1):31-45. doi: 10.1038/ismej.2011.83. Epub 2011 Jun 30.

10.

Bifidobacterium bifidum actively changes the gene expression profile induced by Lactobacillus acidophilus in murine dendritic cells.

Weiss G, Rasmussen S, Nielsen Fink L, Jarmer H, Nøhr Nielsen B, Frøkiaer H.

PLoS One. 2010 Jun 10;5(6):e11065. doi: 10.1371/journal.pone.0011065.

11.

Lactobacillus acidophilus induces virus immune defence genes in murine dendritic cells by a Toll-like receptor-2-dependent mechanism.

Weiss G, Rasmussen S, Zeuthen LH, Nielsen BN, Jarmer H, Jespersen L, Frøkiaer H.

Immunology. 2010 Oct;131(2):268-81. doi: 10.1111/j.1365-2567.2010.03301.x.

12.

The transcriptionally active regions in the genome of Bacillus subtilis.

Rasmussen S, Nielsen HB, Jarmer H.

Mol Microbiol. 2009 Sep;73(6):1043-57. doi: 10.1111/j.1365-2958.2009.06830.x. Epub 2009 Aug 4.

13.

Transcriptional landscape estimation from tiling array data using a model of signal shift and drift.

Nicolas P, Leduc A, Robin S, Rasmussen S, Jarmer H, Bessières P.

Bioinformatics. 2009 Sep 15;25(18):2341-7. doi: 10.1093/bioinformatics/btp395. Epub 2009 Jun 26.

14.

Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora.

Bay LK, Ulstrup KE, Nielsen HB, Jarmer H, Goffard N, Willis BL, Miller DJ, Van Oppen MJ.

Mol Ecol. 2009 Jul;18(14):3062-75. doi: 10.1111/j.1365-294X.2009.04257.x. Epub 2009 Jun 15.

PMID:
19538339
15.

Transcriptomic variation in a coral reveals pathways of clonal organisation.

Bay LK, Nielsen HB, Jarmer H, Seneca F, van Oppen MJ.

Mar Genomics. 2009 Jun;2(2):119-25. doi: 10.1016/j.margen.2009.07.004. Epub 2009 Aug 27.

PMID:
21798180
16.

GLI1 is involved in cell cycle regulation and proliferation of NT2 embryonal carcinoma stem cells.

Vestergaard J, Lind-Thomsen A, Pedersen MW, Jarmer HO, Bak M, Hasholt L, Tommerup N, Tümer Z, Larsen LA.

DNA Cell Biol. 2008 May;27(5):251-6. doi: 10.1089/dna.2007.0625.

PMID:
18241033
17.

The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis.

Bisicchia P, Noone D, Lioliou E, Howell A, Quigley S, Jensen T, Jarmer H, Devine KM.

Mol Microbiol. 2007 Jul;65(1):180-200.

18.

Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans.

David H, Hofmann G, Oliveira AP, Jarmer H, Nielsen J.

Genome Biol. 2006;7(11):R108.

19.

Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism.

Müller R, Morant M, Jarmer H, Nilsson L, Nielsen TH.

Plant Physiol. 2007 Jan;143(1):156-71. Epub 2006 Nov 3.

20.

Genome update: correlation of bacterial genomic properties.

Hallin PF, Coenye T, Binnewies TT, Jarmer H, Saerfeldt HH, Ussery DW.

Microbiology. 2004 Dec;150(Pt 12):3899-903. No abstract available.

PMID:
15583141
21.

Genome update: DNA repeats in bacterial genomes.

Ussery DW, Binnewies TT, Gouveia-Oliveira R, Jarmer H, Hallin PF.

Microbiology. 2004 Nov;150(Pt 11):3519-21. No abstract available.

PMID:
15528640
22.

Roles of PucR, GlnR, and TnrA in regulating expression of the Bacillus subtilis ure P3 promoter.

Brandenburg JL, Wray LV Jr, Beier L, Jarmer H, Saxild HH, Fisher SH.

J Bacteriol. 2002 Nov;184(21):6060-4.

23.

A new non-linear normalization method for reducing variability in DNA microarray experiments.

Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S.

Genome Biol. 2002 Aug 30;3(9):research0048. Epub 2002 Aug 30.

25.

Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions.

Jarmer H, Berka R, Knudsen S, Saxild HH.

FEMS Microbiol Lett. 2002 Jan 10;206(2):197-200.

27.

Sigma A recognition sites in the Bacillus subtilis genome.

Jarmer H, Larsen TS, Krogh A, Saxild HH, Brunak S, Knudsen S.

Microbiology. 2001 Sep;147(Pt 9):2417-24.

PMID:
11535782

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