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Items: 36

1.

The value of environmental DNA biobanking for long-term biomonitoring.

Jarman SN, Berry O, Bunce M.

Nat Ecol Evol. 2018 Jul 2. doi: 10.1038/s41559-018-0614-3. [Epub ahead of print] No abstract available.

PMID:
29967486
2.

DNA methylation levels in candidate genes associated with chronological age in mammals are not conserved in a long-lived seabird.

De Paoli-Iseppi R, Polanowski AM, McMahon C, Deagle BE, Dickinson JL, Hindell MA, Jarman SN.

PLoS One. 2017 Dec 7;12(12):e0189181. doi: 10.1371/journal.pone.0189181. eCollection 2017.

3.

Measuring Animal Age with DNA Methylation: From Humans to Wild Animals.

De Paoli-Iseppi R, Deagle BE, McMahon CR, Hindell MA, Dickinson JL, Jarman SN.

Front Genet. 2017 Aug 17;8:106. doi: 10.3389/fgene.2017.00106. eCollection 2017. Review.

4.

High occurrence of jellyfish predation by black-browed and Campbell albatross identified by DNA metabarcoding.

McInnes JC, Alderman R, Lea MA, Raymond B, Deagle BE, Phillips RA, Stanworth A, Thompson DR, Catry P, Weimerskirch H, Suazo CG, Gras M, Jarman SN.

Mol Ecol. 2017 Sep;26(18):4831-4845. doi: 10.1111/mec.14245. Epub 2017 Aug 16.

PMID:
28734075
5.

Simultaneous DNA-based diet analysis of breeding, non-breeding and chick Adélie penguins.

McInnes JC, Emmerson L, Southwell C, Faux C, Jarman SN.

R Soc Open Sci. 2016 Jan 13;3(1):150443. doi: 10.1098/rsos.150443. eCollection 2016 Jan.

6.

Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddy the water.

Deagle BE, Faux C, Kawaguchi S, Meyer B, Jarman SN.

Mol Ecol. 2015 Oct;24(19):4943-59. doi: 10.1111/mec.13370. Epub 2015 Sep 26.

PMID:
26340718
7.

Molecular biomarkers for chronological age in animal ecology.

Jarman SN, Polanowski AM, Faux CE, Robbins J, De Paoli-Iseppi R, Bravington M, Deagle BE.

Mol Ecol. 2015 Oct;24(19):4826-47. doi: 10.1111/mec.13357. Review.

PMID:
26308242
8.

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match.

Deagle BE, Jarman SN, Coissac E, Pompanon F, Taberlet P.

Biol Lett. 2014 Sep;10(9). pii: 20140562. doi: 10.1098/rsbl.2014.0562.

9.

Epigenetic estimation of age in humpback whales.

Polanowski AM, Robbins J, Chandler D, Jarman SN.

Mol Ecol Resour. 2014 Sep;14(5):976-87. doi: 10.1111/1755-0998.12247. Epub 2014 Apr 7.

10.

High-throughput real-time PCR and melt curve analysis for sexing Southern Ocean seabirds using fecal samples.

Faux CE, McInnes JC, Jarman SN.

Theriogenology. 2014 Apr 1;81(6):870-4. doi: 10.1016/j.theriogenology.2013.12.021. Epub 2014 Jan 3.

11.

Adélie penguin population diet monitoring by analysis of food DNA in scats.

Jarman SN, McInnes JC, Faux C, Polanowski AM, Marthick J, Deagle BE, Southwell C, Emmerson L.

PLoS One. 2013 Dec 16;8(12):e82227. doi: 10.1371/journal.pone.0082227. eCollection 2013.

12.

Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias.

Thomas AC, Jarman SN, Haman KH, Trites AW, Deagle BE.

Mol Ecol. 2014 Aug;23(15):3706-18. doi: 10.1111/mec.12523. Epub 2013 Oct 24.

PMID:
24102760
13.

Stranded dolphin stomach contents represent the free-ranging population's diet.

Dunshea G, Barros NB, Berens McCabe EJ, Gales NJ, Hindell MA, Jarman SN, Wells RS.

Biol Lett. 2013 May 1;9(3):20121036. doi: 10.1098/rsbl.2012.1036. Print 2013 Jun 23.

14.

Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

Deagle BE, Thomas AC, Shaffer AK, Trites AW, Jarman SN.

Mol Ecol Resour. 2013 Jul;13(4):620-33. doi: 10.1111/1755-0998.12103. Epub 2013 Apr 17.

PMID:
23590207
15.

The effect of input DNA copy number on genotype call and characterising SNP markers in the humpback whale genome using a nanofluidic array.

Bhat S, Polanowski AM, Double MC, Jarman SN, Emslie KR.

PLoS One. 2012;7(6):e39181. doi: 10.1371/journal.pone.0039181. Epub 2012 Jun 20.

16.

Pyrosequencing of prey DNA in reptile faeces: analysis of earthworm consumption by slow worms.

Brown DS, Jarman SN, Symondson WO.

Mol Ecol Resour. 2012 Mar;12(2):259-66. doi: 10.1111/j.1755-0998.2011.03098.x. Epub 2011 Dec 18.

PMID:
22176947
17.

Who is eating what: diet assessment using next generation sequencing.

Pompanon F, Deagle BE, Symondson WO, Brown DS, Jarman SN, Taberlet P.

Mol Ecol. 2012 Apr;21(8):1931-50. doi: 10.1111/j.1365-294X.2011.05403.x. Epub 2011 Dec 15. Review.

PMID:
22171763
18.

Variation in the tyrosinase gene associated with a white humpback whale (Megaptera novaeangliae).

Polanowski AM, Robinson-Laverick SM, Paton D, Jarman SN.

J Hered. 2012 Jan-Feb;103(1):130-3. doi: 10.1093/jhered/esr108. Epub 2011 Dec 2.

PMID:
22140253
19.

Telomeres as age markers in vertebrate molecular ecology.

Dunshea G, Duffield D, Gales N, Hindell M, Wells RS, Jarman SN.

Mol Ecol Resour. 2011 Mar;11(2):225-35. doi: 10.1111/j.1755-0998.2010.02976.x. Epub 2011 Jan 14. Review.

PMID:
21429128
20.

Application of blocking oligonucleotides to improve signal-to-noise ratio in a PCR.

Vestheim H, Deagle BE, Jarman SN.

Methods Mol Biol. 2011;687:265-74. doi: 10.1007/978-1-60761-944-4_19.

PMID:
20967615
21.

Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces.

Deagle BE, Kirkwood R, Jarman SN.

Mol Ecol. 2009 May;18(9):2022-38. doi: 10.1111/j.1365-294X.2009.04158.x. Epub 2009 Mar 20.

PMID:
19317847
22.
23.

A molecular approach to identify prey of the southern rock lobster.

Redd KS, Jarman SN, Frusher SD, Johnson CR.

Bull Entomol Res. 2008 Jun;98(3):233-8. doi: 10.1017/S0007485308005981. Epub 2008 Apr 28.

PMID:
18439347
24.

Pseudogenes and DNA-based diet analyses: a cautionary tale from a relatively well sampled predator-prey system.

Dunshea G, Barros NB, Wells RS, Gales NJ, Hindell MA, Jarman SN.

Bull Entomol Res. 2008 Jun;98(3):239-48. doi: 10.1017/S0007485308005993. Epub 2008 Apr 28.

PMID:
18439341
25.

Studying seabird diet through genetic analysis of faeces: a case study on macaroni penguins (Eudyptes chrysolophus).

Deagle BE, Gales NJ, Evans K, Jarman SN, Robinson S, Trebilco R, Hindell MA.

PLoS One. 2007 Sep 5;2(9):e831.

26.

DNA as a dietary biomarker in Antarctic krill, Euphausia superba.

Passmore AJ, Jarman SN, Swadling KM, Kawaguchi S, McMinn A, Nicol S.

Mar Biotechnol (NY). 2006 Nov-Dec;8(6):686-96. Epub 2006 Aug 23.

PMID:
16924375
27.
28.

Cleaver: software for identifying taxon specific restriction endonuclease recognition sites.

Jarman SN.

Bioinformatics. 2006 Sep 1;22(17):2160-1. Epub 2006 Jun 20.

PMID:
16787976
29.

Molecular scatology as a tool to study diet: analysis of prey DNA in scats from captive Steller sea lions.

Deagle BE, Tollit DJ, Jarman SN, Hindell MA, Trites AW, Gales NJ.

Mol Ecol. 2005 May;14(6):1831-42.

PMID:
15836654
30.

Genetic screening for prey in the gut contents from a giant squid (Architeuthis sp.).

Deagle BE, Jarman SN, Pemberton D, Gales NJ.

J Hered. 2005 Jul-Aug;96(4):417-23. Epub 2005 Mar 2.

PMID:
15743905
31.
32.

Amplicon: software for designing PCR primers on aligned DNA sequences.

Jarman SN.

Bioinformatics. 2004 Jul 10;20(10):1644-5. Epub 2004 Feb 12.

PMID:
14962918
33.

Oligonucleotide primers for PCR amplification of coelomate introns.

Jarman SN, Ward RD, Elliott NG.

Mar Biotechnol (NY). 2002 Sep;4(4):347-55.

PMID:
14961246
34.

A DNA-based method for identification of krill species and its application to analysing the diet of marine vertebrate predators.

Jarman SN, Gales NJ, Tierney M, Gill PC, Elliott NG.

Mol Ecol. 2002 Dec;11(12):2679-90.

PMID:
12453250
35.

Genetic differentiation in the Antarctic coastal krill Euphausia crystallorophias.

Jarman SN, Elliott NG, Nicol S, McMinn A.

Heredity (Edinb). 2002 Apr;88(4):280-7.

36.

28S rDNA evolution in the Eumalacostraca and the phylogenetic position of krill.

Jarman SN, Nicol S, Elliott NG, McMinn A.

Mol Phylogenet Evol. 2000 Oct;17(1):26-36.

PMID:
11020302

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