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Items: 1 to 50 of 81

1.

Low-load pathogen spillover predicts shifts in skin microbiome and survival of a terrestrial-breeding amphibian.

Becker CG, Bletz MC, Greenspan SE, Rodriguez D, Lambertini C, Jenkinson TS, Guimarães PR Jr, Assis APA, Geffers R, Jarek M, Toledo LF, Vences M, Haddad CFB.

Proc Biol Sci. 2019 Aug 14;286(1908):20191114. doi: 10.1098/rspb.2019.1114. Epub 2019 Aug 14.

PMID:
31409249
2.

Community richness of amphibian skin bacteria correlates with bioclimate at the global scale.

Kueneman JG, Bletz MC, McKenzie VJ, Becker CG, Joseph MB, Abarca JG, Archer H, Arellano AL, Bataille A, Becker M, Belden LK, Crottini A, Geffers R, Haddad CFB, Harris RN, Holden WM, Hughey M, Jarek M, Kearns PJ, Kerby JL, Kielgast J, Kurabayashi A, Longo AV, Loudon A, Medina D, Nuñez JJ, Perl RGB, Pinto-Tomás A, Rabemananjara FCE, Rebollar EA, Rodríguez A, Rollins-Smith L, Stevenson R, Tebbe CC, Vargas Asensio G, Waldman B, Walke JB, Whitfield SM, Zamudio KR, Zúñiga Chaves I, Woodhams DC, Vences M.

Nat Ecol Evol. 2019 Mar;3(3):381-389. doi: 10.1038/s41559-019-0798-1. Epub 2019 Feb 18.

PMID:
30778181
3.
4.

Day and Night: Metabolic Profiles and Evolutionary Relationships of Six Axenic Non-Marine Cyanobacteria.

Will SE, Henke P, Boedeker C, Huang S, Brinkmann H, Rohde M, Jarek M, Friedl T, Seufert S, Schumacher M, Overmann J, Neumann-Schaal M, Petersen J.

Genome Biol Evol. 2019 Jan 1;11(1):270-294. doi: 10.1093/gbe/evy275.

5.

Cilostazol-loaded electrospun three-dimensional systems for potential cardiovascular application: Effect of fibers hydrophilization on drug release, and cytocompatibility.

Rychter M, Milanowski B, Grześkowiak BF, Jarek M, Kempiński M, Coy EL, Borysiak S, Baranowska-Korczyc A, Lulek J.

J Colloid Interface Sci. 2019 Feb 15;536:310-327. doi: 10.1016/j.jcis.2018.10.026. Epub 2018 Oct 15.

PMID:
30380431
6.

Gel with silver and ultrasmall iron oxide nanoparticles produced with Amanita muscaria extract: physicochemical characterization, microstructure analysis and anticancer properties.

Ivashchenko O, Przysiecka Ł, Peplińska B, Jarek M, Coy E, Jurga S.

Sci Rep. 2018 Sep 5;8(1):13260. doi: 10.1038/s41598-018-31686-x.

7.

Silver and ultrasmall iron oxides nanoparticles in hydrocolloids: effect of magnetic field and temperature on self-organization.

Ivashchenko O, Peplińska B, Gapiński J, Flak D, Jarek M, Załęski K, Nowaczyk G, Pietralik Z, Jurga S.

Sci Rep. 2018 Mar 6;8(1):4041. doi: 10.1038/s41598-018-22426-2.

8.

Worlds Apart - Transcriptome Profiles of Key Oral Microbes in the Periodontal Pocket Compared to Single Laboratory Culture Reflect Synergistic Interactions.

Deng ZL, Sztajer H, Jarek M, Bhuju S, Wagner-Döbler I.

Front Microbiol. 2018 Feb 6;9:124. doi: 10.3389/fmicb.2018.00124. eCollection 2018.

9.

Cilostazol-Loaded Poly(ε-Caprolactone) Electrospun Drug Delivery System for Cardiovascular Applications.

Rychter M, Baranowska-Korczyc A, Milanowski B, Jarek M, Maciejewska BM, Coy EL, Lulek J.

Pharm Res. 2018 Jan 16;35(2):32. doi: 10.1007/s11095-017-2314-0.

10.

Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random.

Tomasch J, Wang H, Hall ATK, Patzelt D, Preusse M, Petersen J, Brinkmann H, Bunk B, Bhuju S, Jarek M, Geffers R, Lang AS, Wagner-Döbler I.

Genome Biol Evol. 2018 Jan 1;10(1):359-369. doi: 10.1093/gbe/evy005.

11.

Theranostic liposomes as a bimodal carrier for magnetic resonance imaging contrast agent and photosensitizer.

Skupin-Mrugalska P, Sobotta L, Warowicka A, Wereszczynska B, Zalewski T, Gierlich P, Jarek M, Nowaczyk G, Kempka M, Gapinski J, Jurga S, Mielcarek J.

J Inorg Biochem. 2018 Mar;180:1-14. doi: 10.1016/j.jinorgbio.2017.11.025. Epub 2017 Dec 2.

PMID:
29223825
12.

Distribution and Evolution of Peroxisomes in Alveolates (Apicomplexa, Dinoflagellates, Ciliates).

Ludewig-Klingner AK, Michael V, Jarek M, Brinkmann H, Petersen J.

Genome Biol Evol. 2018 Jan 1;10(1):1-13. doi: 10.1093/gbe/evx250.

13.

The Biofilm Inhibitor Carolacton Enters Gram-Negative Cells: Studies Using a TolC-Deficient Strain of Escherichia coli.

Donner J, Reck M, Bunk B, Jarek M, App CB, Meier-Kolthoff JP, Overmann J, Müller R, Kirschning A, Wagner-Döbler I.

mSphere. 2017 Sep 27;2(5). pii: e00375-17. doi: 10.1128/mSphereDirect.00375-17. eCollection 2017 Sep-Oct.

14.

Draft Genome Sequence of Zoonotic Streptococcus canis Isolate G361.

Eichhorn I, van der Linden M, Jarek M, Fulde M.

Genome Announc. 2017 Sep 21;5(38). pii: e00967-17. doi: 10.1128/genomeA.00967-17.

15.

Phylotranscriptomic consolidation of the jawed vertebrate timetree.

Irisarri I, Baurain D, Brinkmann H, Delsuc F, Sire JY, Kupfer A, Petersen J, Jarek M, Meyer A, Vences M, Philippe H.

Nat Ecol Evol. 2017 Sep;1(9):1370-1378. doi: 10.1038/s41559-017-0240-5. Epub 2017 Jul 24.

16.

Complete Genome Sequence of JII-1961, a Bovine Mycobacterium avium subsp. paratuberculosis Field Isolate from Germany.

Möbius P, Nordsiek G, Hölzer M, Jarek M, Marz M, Köhler H.

Genome Announc. 2017 Aug 24;5(34). pii: e00870-17. doi: 10.1128/genomeA.00870-17.

17.

Molecular Dynamics Study of Polystyrene-b-poly(ethylene oxide) Asymmetric Diblock Copolymer Systems.

Dobies M, Makrocka-Rydzyk M, Jenczyk J, Jarek M, Spontak RJ, Jurga S.

Langmuir. 2017 Sep 12;33(36):8856-8868. doi: 10.1021/acs.langmuir.7b02017. Epub 2017 Aug 29.

PMID:
28814072
18.

Divergent co-transcriptomes of different host cells infected with Toxoplasma gondii reveal cell type-specific host-parasite interactions.

Swierzy IJ, Händel U, Kaever A, Jarek M, Scharfe M, Schlüter D, Lüder CGK.

Sci Rep. 2017 Aug 3;7(1):7229. doi: 10.1038/s41598-017-07838-w.

19.

Dysbiosis in chronic periodontitis: Key microbial players and interactions with the human host.

Deng ZL, Szafrański SP, Jarek M, Bhuju S, Wagner-Döbler I.

Sci Rep. 2017 Jun 16;7(1):3703. doi: 10.1038/s41598-017-03804-8.

20.

Molecular dynamics of 1-ethyl-3-methylimidazolium triflate ionic liquid studied by 1H and 19F nuclear magnetic resonances.

Wencka M, Apih T, Korošec RC, Jenczyk J, Jarek M, Szutkowski K, Jurga S, Dolinšek J.

Phys Chem Chem Phys. 2017 Jun 14;19(23):15368-15376. doi: 10.1039/c7cp01045a.

PMID:
28574565
21.

Temporal changes in cutaneous bacterial communities of terrestrial- and aquatic-phase newts (Amphibia).

Sabino-Pinto J, Galán P, Rodríguez S, Bletz MC, Bhuju S, Geffers R, Jarek M, Vences M.

Environ Microbiol. 2017 Aug;19(8):3025-3038. doi: 10.1111/1462-2920.13762. Epub 2017 Jun 6.

PMID:
28419728
22.

Amphibian skin microbiota exhibits temporal variation in community structure but stability of predicted Bd-inhibitory function.

Bletz MC, Perl RGB, Bobowski BT, Japke LM, Tebbe CC, Dohrmann AB, Bhuju S, Geffers R, Jarek M, Vences M.

ISME J. 2017 Jul;11(7):1521-1534. doi: 10.1038/ismej.2017.41. Epub 2017 Apr 7.

23.

Quorum sensing of Streptococcus mutans is activated by Aggregatibacter actinomycetemcomitans and by the periodontal microbiome.

Szafrański SP, Deng ZL, Tomasch J, Jarek M, Bhuju S, Rohde M, Sztajer H, Wagner-Döbler I.

BMC Genomics. 2017 Mar 20;18(1):238. doi: 10.1186/s12864-017-3618-5.

24.

Transcriptomic Analysis Reveals Selective Metabolic Adaptation of Streptococcus suis to Porcine Blood and Cerebrospinal Fluid.

Koczula A, Jarek M, Visscher C, Valentin-Weigand P, Goethe R, Willenborg J.

Pathogens. 2017 Feb 15;6(1). pii: E7. doi: 10.3390/pathogens6010007.

25.

Complete Genome Sequences of Three Multidrug-Resistant Clinical Isolates of Streptococcus pneumoniae Serotype 19A with Different Susceptibilities to the Myxobacterial Metabolite Carolacton.

Donner J, Bunk B, Schober I, Spröer C, Bergmann S, Jarek M, Overmann J, Wagner-Döbler I.

Genome Announc. 2017 Feb 16;5(7). pii: e01641-16. doi: 10.1128/genomeA.01641-16.

26.

Green synthesis of rifampicin-loaded copper nanoparticles with enhanced antimicrobial activity.

Woźniak-Budych MJ, Przysiecka Ł, Langer K, Peplińska B, Jarek M, Wiesner M, Nowaczyk G, Jurga S.

J Mater Sci Mater Med. 2017 Mar;28(3):42. doi: 10.1007/s10856-017-5857-z. Epub 2017 Feb 1.

PMID:
28150115
27.

Influence of silver content on rifampicin adsorptivity for magnetite/Ag/rifampicin nanoparticles.

Ivashchenko O, Coy E, Peplinska B, Jarek M, Lewandowski M, Załęski K, Warowicka A, Wozniak A, Babutina T, Jurga-Stopa J, Dolinsek J, Jurga S.

Nanotechnology. 2017 Feb 3;28(5):055603. doi: 10.1088/1361-6528/28/5/055603. Epub 2016 Dec 28.

PMID:
28029097
28.

Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions.

Bletz MC, Goedbloed DJ, Sanchez E, Reinhardt T, Tebbe CC, Bhuju S, Geffers R, Jarek M, Vences M, Steinfartz S.

Nat Commun. 2016 Dec 15;7:13699. doi: 10.1038/ncomms13699.

29.

Chromatin binding of Gcn5 in Drosophila is largely mediated by CP190.

Ali T, Krüger M, Bhuju S, Jarek M, Bartkuhn M, Renkawitz R.

Nucleic Acids Res. 2017 Mar 17;45(5):2384-2395. doi: 10.1093/nar/gkw1178.

30.

Cutaneous Bacterial Communities of a Poisonous Salamander: a Perspective from Life Stages, Body Parts and Environmental Conditions.

Sanchez E, Bletz MC, Duntsch L, Bhuju S, Geffers R, Jarek M, Dohrmann AB, Tebbe CC, Steinfartz S, Vences M.

Microb Ecol. 2017 Feb;73(2):455-465. doi: 10.1007/s00248-016-0863-0. Epub 2016 Sep 27.

PMID:
27677894
31.

Analysis of the Distribution of Energy Barriers in Amorphous Diazepam on the Basis of Computationally Supported NMR Relaxation Data.

Pajzderska A, Jarek M, Mielcarek J, Wąsicki J.

J Phys Chem B. 2016 Oct 20;120(41):10723-10728. doi: 10.1021/acs.jpcb.6b08482. Epub 2016 Oct 5.

PMID:
27657328
32.

Draft Genome Sequence of Aeromonas sp. Strain EERV15.

Ehsani E, Barrantes I, Vandermaesen J, Geffers R, Jarek M, Boon N, Springael D, Pieper DH, Vilchez-Vargas R.

Genome Announc. 2016 Aug 18;4(4). pii: e00811-16. doi: 10.1128/genomeA.00811-16.

33.

A Novel Mechanism of Host-Pathogen Interaction through sRNA in Bacterial Outer Membrane Vesicles.

Koeppen K, Hampton TH, Jarek M, Scharfe M, Gerber SA, Mielcarz DW, Demers EG, Dolben EL, Hammond JH, Hogan DA, Stanton BA.

PLoS Pathog. 2016 Jun 13;12(6):e1005672. doi: 10.1371/journal.ppat.1005672. eCollection 2016 Jun.

34.

Composition of the Cutaneous Bacterial Community in Japanese Amphibians: Effects of Captivity, Host Species, and Body Region.

Sabino-Pinto J, Bletz MC, Islam MM, Shimizu N, Bhuju S, Geffers R, Jarek M, Kurabayashi A, Vences M.

Microb Ecol. 2016 Aug;72(2):460-9. doi: 10.1007/s00248-016-0797-6. Epub 2016 Jun 8.

PMID:
27278778
35.

Gut bacterial communities across tadpole ecomorphs in two diverse tropical anuran faunas.

Vences M, Lyra ML, Kueneman JG, Bletz MC, Archer HM, Canitz J, Handreck S, Randrianiaina RD, Struck U, Bhuju S, Jarek M, Geffers R, McKenzie VJ, Tebbe CC, Haddad CF, Glos J.

Naturwissenschaften. 2016 Apr;103(3-4):25. doi: 10.1007/s00114-016-1348-1. Epub 2016 Feb 29.

PMID:
26924012
36.

In search of the mutual relationship between the structure, solid-state spectroscopy and molecular dynamics in selected calcium channel blockers.

Drużbicki K, Pajzderska A, Kiwilsza A, Jenczyk J, Chudoba D, Jarek M, Mielcarek J, Wąsicki J.

Eur J Pharm Sci. 2016 Mar 31;85:68-83. doi: 10.1016/j.ejps.2016.01.024. Epub 2016 Jan 29.

PMID:
26827925
37.

A Genomic Approach to Resolving Relapse versus Reinfection among Four Cases of Buruli Ulcer.

Eddyani M, Vandelannoote K, Meehan CJ, Bhuju S, Porter JL, Aguiar J, Seemann T, Jarek M, Singh M, Portaels F, Stinear TP, de Jong BC.

PLoS Negl Trop Dis. 2015 Nov 30;9(11):e0004158. doi: 10.1371/journal.pntd.0004158. eCollection 2015 Nov.

38.

Identification of Genetic Modules Mediating the Jekyll and Hyde Interaction of Dinoroseobacter shibae with the Dinoflagellate Prorocentrum minimum.

Wang H, Tomasch J, Michael V, Bhuju S, Jarek M, Petersen J, Wagner-Döbler I.

Front Microbiol. 2015 Nov 13;6:1262. doi: 10.3389/fmicb.2015.01262. eCollection 2015.

39.

First Draft Genome Sequence of the Acidovorax caeni sp. nov. Type Strain R-24608 (DSM 19327).

Ehsani E, Jauregui R, Geffers R, Jarek M, Boon N, Pieper DH, Vilchez-Vargas R.

Genome Announc. 2015 Nov 19;3(6). pii: e01378-15. doi: 10.1128/genomeA.01378-15.

40.

Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis.

Szafrański SP, Deng ZL, Tomasch J, Jarek M, Bhuju S, Meisinger C, Kühnisch J, Sztajer H, Wagner-Döbler I.

NPJ Biofilms Microbiomes. 2015 Sep 23;1:15017. doi: 10.1038/npjbiofilms.2015.17. eCollection 2015.

41.

Genomic Analysis and Isolation of RNA Polymerase II Dependent Promoters from Spodoptera frugiperda.

Bleckmann M, Fritz MH, Bhuju S, Jarek M, Schürig M, Geffers R, Benes V, Besir H, van den Heuvel J.

PLoS One. 2015 Aug 11;10(8):e0132898. doi: 10.1371/journal.pone.0132898. eCollection 2015.

42.

Stool metatranscriptomics: A technical guideline for mRNA stabilisation and isolation.

Reck M, Tomasch J, Deng Z, Jarek M, Husemann P, Wagner-Döbler I; COMBACTE Consortium.

BMC Genomics. 2015 Jul 4;16:494. doi: 10.1186/s12864-015-1694-y.

43.

Synthesis and characterization of magnetite/silver/antibiotic nanocomposites for targeted antimicrobial therapy.

Ivashchenko O, Lewandowski M, Peplińska B, Jarek M, Nowaczyk G, Wiesner M, Załęski K, Babutina T, Warowicka A, Jurga S.

Mater Sci Eng C Mater Biol Appl. 2015 Oct;55:343-59. doi: 10.1016/j.msec.2015.05.023. Epub 2015 May 12.

PMID:
26117765
44.

Transcriptomic profiling of Yersinia pseudotuberculosis reveals reprogramming of the Crp regulon by temperature and uncovers Crp as a master regulator of small RNAs.

Nuss AM, Heroven AK, Waldmann B, Reinkensmeier J, Jarek M, Beckstette M, Dersch P.

PLoS Genet. 2015 Mar 27;11(3):e1005087. doi: 10.1371/journal.pgen.1005087. eCollection 2015 Mar.

45.

Sepsis induces specific changes in histone modification patterns in human monocytes.

Weiterer S, Uhle F, Lichtenstern C, Siegler BH, Bhuju S, Jarek M, Bartkuhn M, Weigand MA.

PLoS One. 2015 Mar 20;10(3):e0121748. doi: 10.1371/journal.pone.0121748. eCollection 2015.

46.

Complete Sequence of Probiotic Symbioflor 2 Escherichia coli Strain G3/10 and Draft Sequences of Symbioflor 2 E. coli Strains G1/2, G4/9, G5, G6/7, and G8.

Zschüttig A, Auerbach C, Meltke S, Eichhorn C, Brandt M, Blom J, Goesmann A, Jarek M, Scharfe M, Zimmermann K, Wassenaar TM, Gunzer F.

Genome Announc. 2015 Mar 5;3(2). pii: e01330-14. doi: 10.1128/genomeA.01330-14.

47.

FurA contributes to the oxidative stress response regulation of Mycobacterium avium ssp. paratuberculosis.

Eckelt E, Meißner T, Meens J, Laarmann K, Nerlich A, Jarek M, Weiss S, Gerlach GF, Goethe R.

Front Microbiol. 2015 Feb 6;6:16. doi: 10.3389/fmicb.2015.00016. eCollection 2015.

48.

Identification of a lineage specific zinc responsive genomic island in Mycobacterium avium ssp. paratuberculosis.

Eckelt E, Jarek M, Frömke C, Meens J, Goethe R.

BMC Genomics. 2014 Dec 6;15:1076. doi: 10.1186/1471-2164-15-1076.

49.

A functional insulator screen identifies NURF and dREAM components to be required for enhancer-blocking.

Bohla D, Herold M, Panzer I, Buxa MK, Ali T, Demmers J, Krüger M, Scharfe M, Jarek M, Bartkuhn M, Renkawitz R.

PLoS One. 2014 Sep 23;9(9):e107765. doi: 10.1371/journal.pone.0107765. eCollection 2014.

50.

A dual-species co-cultivation system to study the interactions between Roseobacters and dinoflagellates.

Wang H, Tomasch J, Jarek M, Wagner-Döbler I.

Front Microbiol. 2014 Jun 25;5:311. doi: 10.3389/fmicb.2014.00311. eCollection 2014.

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