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Items: 26

1.

FISIK: Framework for the Inference of In Situ Interaction Kinetics from Single-Molecule Imaging Data.

de Oliveira LR, Jaqaman K.

Biophys J. 2019 Sep 17;117(6):1012-1028. doi: 10.1016/j.bpj.2019.07.050. Epub 2019 Aug 6.

PMID:
31443908
2.

A composition-dependent molecular clutch between T cell signaling condensates and actin.

Ditlev JA, Vega AR, Köster DV, Su X, Tani T, Lakoduk AM, Vale RD, Mayor S, Jaqaman K, Rosen MK.

Elife. 2019 Jul 3;8. pii: e42695. doi: 10.7554/eLife.42695.

3.

Kinesin-dependent transport of keratin filaments: a unified mechanism for intermediate filament transport.

Robert A, Tian P, Adam SA, Kittisopikul M, Jaqaman K, Goldman RD, Gelfand VI.

FASEB J. 2019 Jan;33(1):388-399. doi: 10.1096/fj.201800604R. Epub 2018 Jun 26.

PMID:
29944446
4.

Multistep Track Segmentation and Motion Classification for Transient Mobility Analysis.

Vega AR, Freeman SA, Grinstein S, Jaqaman K.

Biophys J. 2018 Mar 13;114(5):1018-1025. doi: 10.1016/j.bpj.2018.01.012.

5.

Piecewise-Stationary Motion Modeling and Iterative Smoothing to Track Heterogeneous Particle Motions in Dense Environments.

Roudot P, Liya Ding, Jaqaman K, Kervrann C, Danuser G.

IEEE Trans Image Process. 2017 Nov;26(11):5395-5410. doi: 10.1109/TIP.2017.2707803.

6.

Transmembrane Pickets Connect Cyto- and Pericellular Skeletons Forming Barriers to Receptor Engagement.

Freeman SA, Vega A, Riedl M, Collins RF, Ostrowski PP, Woods EC, Bertozzi CR, Tammi MI, Lidke DS, Johnson P, Mayor S, Jaqaman K, Grinstein S.

Cell. 2018 Jan 11;172(1-2):305-317.e10. doi: 10.1016/j.cell.2017.12.023.

7.

Ligand-induced growth and compaction of CD36 nanoclusters enriched in Fyn induces Fyn signaling.

Githaka JM, Vega AR, Baird MA, Davidson MW, Jaqaman K, Touret N.

J Cell Sci. 2016 Nov 15;129(22):4175-4189. Epub 2016 Sep 30.

8.

Changes in single-molecule integrin dynamics linked to local cellular behavior.

Jaqaman K, Galbraith JA, Davidson MW, Galbraith CG.

Mol Biol Cell. 2016 May 15;27(10):1561-9. doi: 10.1091/mbc.E16-01-0018. Epub 2016 Mar 23.

9.

Structural organization of nuclear lamins A, C, B1, and B2 revealed by superresolution microscopy.

Shimi T, Kittisopikul M, Tran J, Goldman AE, Adam SA, Zheng Y, Jaqaman K, Goldman RD.

Mol Biol Cell. 2015 Nov 5;26(22):4075-86. doi: 10.1091/mbc.E15-07-0461. Epub 2015 Aug 26.

10.

Actin cytoskeleton reorganization by Syk regulates Fcγ receptor responsiveness by increasing its lateral mobility and clustering.

Jaumouillé V, Farkash Y, Jaqaman K, Das R, Lowell CA, Grinstein S.

Dev Cell. 2014 Jun 9;29(5):534-546. doi: 10.1016/j.devcel.2014.04.031.

11.

S. cerevisiae chromosomes biorient via gradual resolution of syntely between S phase and anaphase.

Marco E, Dorn JF, Hsu PH, Jaqaman K, Sorger PK, Danuser G.

Cell. 2013 Aug 29;154(5):1127-1139. doi: 10.1016/j.cell.2013.08.008.

12.

Regulation from within: the cytoskeleton in transmembrane signaling.

Jaqaman K, Grinstein S.

Trends Cell Biol. 2012 Oct;22(10):515-26. doi: 10.1016/j.tcb.2012.07.006. Epub 2012 Aug 20. Review.

13.

Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function.

Jaqaman K, Kuwata H, Touret N, Collins R, Trimble WS, Danuser G, Grinstein S.

Cell. 2011 Aug 19;146(4):593-606. doi: 10.1016/j.cell.2011.06.049.

14.

plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics.

Applegate KT, Besson S, Matov A, Bagonis MH, Jaqaman K, Danuser G.

J Struct Biol. 2011 Nov;176(2):168-84. doi: 10.1016/j.jsb.2011.07.009. Epub 2011 Jul 29.

15.

Dynamic macrophage "probing" is required for the efficient capture of phagocytic targets.

Flannagan RS, Harrison RE, Yip CM, Jaqaman K, Grinstein S.

J Cell Biol. 2010 Dec 13;191(6):1205-18. doi: 10.1083/jcb.201007056. Epub 2010 Dec 6.

16.

Kinetochore alignment within the metaphase plate is regulated by centromere stiffness and microtubule depolymerases.

Jaqaman K, King EM, Amaro AC, Winter JR, Dorn JF, Elliott HL, McHedlishvili N, McClelland SE, Porter IM, Posch M, Toso A, Danuser G, McAinsh AD, Meraldi P, Swedlow JR.

J Cell Biol. 2010 Mar 8;188(5):665-79. doi: 10.1083/jcb.200909005.

17.

Computational image analysis of cellular dynamics: a case study based on particle tracking.

Jaqaman K, Danuser G.

Cold Spring Harb Protoc. 2009 Dec;2009(12):pdb.top65. doi: 10.1101/pdb.top65. No abstract available.

18.

Cargo and dynamin regulate clathrin-coated pit maturation.

Loerke D, Mettlen M, Yarar D, Jaqaman K, Jaqaman H, Danuser G, Schmid SL.

PLoS Biol. 2009 Mar 17;7(3):e57. doi: 10.1371/journal.pbio.1000057.

19.

Robust single-particle tracking in live-cell time-lapse sequences.

Jaqaman K, Loerke D, Mettlen M, Kuwata H, Grinstein S, Schmid SL, Danuser G.

Nat Methods. 2008 Aug;5(8):695-702. doi: 10.1038/nmeth.1237. Epub 2008 Jul 20.

20.

Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics.

Jaqaman K, Dorn JF, Marco E, Sorger PK, Danuser G.

Bioinformatics. 2007 Jul 1;23(13):1666-73. Epub 2007 May 5.

PMID:
17483508
21.

Linking data to models: data regression.

Jaqaman K, Danuser G.

Nat Rev Mol Cell Biol. 2006 Nov;7(11):813-9. doi: 10.1038/nrm2030. Epub 2006 Sep 27. Review.

PMID:
17006434
22.

Comparative autoregressive moving average analysis of kinetochore microtubule dynamics in yeast.

Jaqaman K, Dorn JF, Jelson GS, Tytell JD, Sorger PK, Danuser G.

Biophys J. 2006 Sep 15;91(6):2312-25.

23.

Yeast kinetochore microtubule dynamics analyzed by high-resolution three-dimensional microscopy.

Dorn JF, Jaqaman K, Rines DR, Jelson GS, Sorger PK, Danuser G.

Biophys J. 2005 Oct;89(4):2835-54.

24.

Classical density functional theory of orientational order at interfaces: application to water.

Jaqaman K, Tuncay K, Ortoleva PJ.

J Chem Phys. 2004 Jan 8;120(2):926-38.

PMID:
15267929
25.

The Karyote physico-chemical genomic, proteomic, metabolic cell modeling system.

Ortoleva P, Berry E, Brun Y, Fan J, Fontus M, Hubbard K, Jaqaman K, Jarymowycz L, Navid A, Sayyed-Ahmad A, Shreif Z, Stanley F, Tuncay K, Weitzke E, Wu LC.

OMICS. 2003 Fall;7(3):269-83.

PMID:
14583116
26.

New space warping method for the simulation of large-scale macromolecular conformational changes.

Jaqaman K, Ortoleva PJ.

J Comput Chem. 2002 Mar;23(4):484-91.

PMID:
11908085

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