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Items: 1 to 50 of 100

1.

Adaptation by Loss of Heterozygosity in Saccharomyces cerevisiae Clones Under Divergent Selection.

James TY, Michelotti LA, Glasco AD, Clemons RA, Powers RA, James ES, Simmons DR, Bai F, Ge S.

Genetics. 2019 Aug 1. pii: genetics.302411.2019. doi: 10.1534/genetics.119.302411. [Epub ahead of print]

2.

Comparative pathogenicity of opportunistic black yeasts in Aureobasidium.

Wang M, Danesi P, James TY, Al-Hatmi AMS, Najafzadeh MJ, Dolatabadi S, Ming C, Liou GY, Kang Y, de Hoog S.

Mycoses. 2019 Sep;62(9):803-811. doi: 10.1111/myc.12931. Epub 2019 Jul 19.

PMID:
31107996
3.

Novel taxa in Cladochytriales (Chytridiomycota): Karlingiella (gen. nov.) and Nowakowskiella crenulata (sp. nov.).

Jerônimo GH, Jesus AL, Simmons DR, James TY, Pires-Zottarelli CLA.

Mycologia. 2019 May-Jun;111(3):506-516. doi: 10.1080/00275514.2019.1588583. Epub 2019 Apr 23.

PMID:
31012810
4.

Globally invasive genotypes of the amphibian chytrid outcompete an enzootic lineage in coinfections.

Jenkinson TS, Rodriguez D, Clemons RA, Michelotti LA, Zamudio KR, Toledo LF, Longcore JE, James TY.

Proc Biol Sci. 2018 Dec 19;285(1893):20181894. doi: 10.1098/rspb.2018.1894.

PMID:
30963903
5.

Marine fungi.

Gladfelter AS, James TY, Amend AS.

Curr Biol. 2019 Mar 18;29(6):R191-R195. doi: 10.1016/j.cub.2019.02.009.

PMID:
30889385
6.

A new 18S rRNA phylogeny of uncultured predacious fungi (Zoopagales).

Davis WJ, Amses KR, James ES, James TY.

Mycologia. 2019 Mar-Apr;111(2):291-298. doi: 10.1080/00275514.2018.1546066. Epub 2019 Mar 11.

PMID:
30856068
7.

Diversity of cytosine methylation across the fungal tree of life.

Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ.

Nat Ecol Evol. 2019 Mar;3(3):479-490. doi: 10.1038/s41559-019-0810-9. Epub 2019 Feb 18.

8.

Diverse genotypes of the amphibian-killing fungus produce distinct phenotypes through plastic responses to temperature.

Muletz-Wolz CR, Barnett SE, DiRenzo GV, Zamudio KR, Toledo LF, James TY, Lips KR.

J Evol Biol. 2019 Mar;32(3):287-298. doi: 10.1111/jeb.13413. Epub 2019 Feb 8.

PMID:
30650220
9.

Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi).

Davis WJ, Amses KR, Benny GL, Carter-House D, Chang Y, Grigoriev I, Smith ME, Spatafora JW, Stajich JE, James TY.

Mol Phylogenet Evol. 2019 Apr;133:152-163. doi: 10.1016/j.ympev.2019.01.006. Epub 2019 Jan 11.

PMID:
30639767
10.

Exploring the role of ectomycorrhizal fungi in soil carbon dynamics.

Zak DR, Pellitier PT, Argiroff W, Castillo B, James TY, Nave LE, Averill C, Beidler KV, Bhatnagar J, Blesh J, Classen AT, Craig M, Fernandez CW, Gundersen P, Johansen R, Koide RT, Lilleskov EA, Lindahl BD, Nadelhoffer KJ, Phillips RP, Tunlid A.

New Phytol. 2019 Jul;223(1):33-39. doi: 10.1111/nph.15679. Epub 2019 Feb 8.

PMID:
30636276
11.

Phylogenetic taxon definitions for Fungi, Dikarya, Ascomycota and Basidiomycota.

Hibbett DS, Blackwell M, James TY, Spatafora JW, Taylor JW, Vilgalys R.

IMA Fungus. 2018 Jul;9:291-298. doi: 10.5598/imafungus.2018.09.02.05. Epub 2018 Sep 12.

12.

Contemporaneous radiations of fungi and plants linked to symbiosis.

Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold AE, Lewis LA, Swofford DL, Hibbett D, Hilu K, James TY, Quandt D, Magallón S.

Nat Commun. 2018 Dec 21;9(1):5451. doi: 10.1038/s41467-018-07849-9.

13.

Fungarium specimens: a largely untapped source in global change biology and beyond.

Andrew C, Diez J, James TY, Kauserud H.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170392. doi: 10.1098/rstb.2017.0392. Review.

PMID:
30455210
14.

Leveraging single-cell genomics to expand the fungal tree of life.

Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV.

Nat Microbiol. 2018 Dec;3(12):1417-1428. doi: 10.1038/s41564-018-0261-0. Epub 2018 Oct 8.

PMID:
30297742
15.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.

Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q.

J Eukaryot Microbiol. 2019 Jan;66(1):4-119. doi: 10.1111/jeu.12691.

16.

Hybrids of amphibian chytrid show high virulence in native hosts.

Greenspan SE, Lambertini C, Carvalho T, James TY, Toledo LF, Haddad CFB, Becker CG.

Sci Rep. 2018 Jun 25;8(1):9600. doi: 10.1038/s41598-018-27828-w.

17.

Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi.

Fisher MC, Ghosh P, Shelton JMG, Bates K, Brookes L, Wierzbicki C, Rosa GM, Farrer RA, Aanensen DM, Alvarado-Rybak M, Bataille A, Berger L, Böll S, Bosch J, Clare FC, A Courtois E, Crottini A, Cunningham AA, Doherty-Bone TM, Gebresenbet F, Gower DJ, Höglund J, James TY, Jenkinson TS, Kosch TA, Lambertini C, Laurila A, Lin CF, Loyau A, Martel A, Meurling S, Miaud C, Minting P, Ndriantsoa S, O'Hanlon SJ, Pasmans F, Rakotonanahary T, Rabemananjara FCE, Ribeiro LP, Schmeller DS, Schmidt BR, Skerratt L, Smith F, Soto-Azat C, Tessa G, Toledo LF, Valenzuela-Sánchez A, Verster R, Vörös J, Waldman B, Webb RJ, Weldon C, Wombwell E, Zamudio KR, Longcore JE, Garner TWJ.

Sci Rep. 2018 May 17;8(1):7772. doi: 10.1038/s41598-018-24472-2.

18.

Recent Asian origin of chytrid fungi causing global amphibian declines.

O'Hanlon SJ, Rieux A, Farrer RA, Rosa GM, Waldman B, Bataille A, Kosch TA, Murray KA, Brankovics B, Fumagalli M, Martin MD, Wales N, Alvarado-Rybak M, Bates KA, Berger L, Böll S, Brookes L, Clare F, Courtois EA, Cunningham AA, Doherty-Bone TM, Ghosh P, Gower DJ, Hintz WE, Höglund J, Jenkinson TS, Lin CF, Laurila A, Loyau A, Martel A, Meurling S, Miaud C, Minting P, Pasmans F, Schmeller DS, Schmidt BR, Shelton JMG, Skerratt LF, Smith F, Soto-Azat C, Spagnoletti M, Tessa G, Toledo LF, Valenzuela-Sánchez A, Verster R, Vörös J, Webb RJ, Wierzbicki C, Wombwell E, Zamudio KR, Aanensen DM, James TY, Gilbert MTP, Weldon C, Bosch J, Balloux F, Garner TWJ, Fisher MC.

Science. 2018 May 11;360(6389):621-627. doi: 10.1126/science.aar1965.

19.

Amphibian chytrid infection is influenced by rainfall seasonality and water availability.

Ruggeri J, Carvalho-E-Silva SP, James TY, Toledo LF.

Dis Aquat Organ. 2018 Jan 31;127(2):107-115. doi: 10.3354/dao03191.

PMID:
29384480
20.

First report of the post-fire morel Morchella exuberans in eastern North America.

Miller AN, Raudabaugh DB, Iturriaga T, Matheny PB, Petersen RH, Hughes KW, Gube M, Powers RA, James TY, O'Donnell K.

Mycologia. 2017;109(5):710-714. doi: 10.1080/00275514.2017.1408294. Epub 2018 Jan 25.

PMID:
29370582
21.

Low resistance to chytridiomycosis in direct-developing amphibians.

Mesquita AFC, Lambertini C, Lyra M, Malagoli LR, James TY, Toledo LF, Haddad CFB, Becker CG.

Sci Rep. 2017 Nov 30;7(1):16605. doi: 10.1038/s41598-017-16425-y.

22.

The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism.

Quandt CA, Beaudet D, Corsaro D, Walochnik J, Michel R, Corradi N, James TY.

Elife. 2017 Nov 24;6. pii: e29594. doi: 10.7554/eLife.29594.

23.

Genome-Wide Screen for Saccharomyces cerevisiae Genes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host.

Phadke SS, Maclean CJ, Zhao SY, Mueller EA, Michelotti LA, Norman KL, Kumar A, James TY.

G3 (Bethesda). 2018 Jan 4;8(1):63-78. doi: 10.1534/g3.117.300245.

24.

Description of Bifiguratus adelaidae: The hunt ends for one of the "Top 50 Most Wanted Fungi".

James TY, Seifert KA.

Mycologia. 2017 May-Jun;109(3):361-362. doi: 10.1080/00275514.2017.1372667. Epub 2017 Sep 6. No abstract available.

PMID:
28876180
25.

Mating-type genes of the anamorphic fungus Ulocladium botrytis affect both asexual sporulation and sexual reproduction.

Wang Q, Wang S, Xiong CL, James TY, Zhang XG.

Sci Rep. 2017 Aug 11;7(1):7932. doi: 10.1038/s41598-017-08471-3.

26.

Morphology, Ultrastructure, and Molecular Phylogeny of Rozella multimorpha, a New Species in Cryptomycota.

Letcher PM, Longcore JE, James TY, Leite DS, Simmons DR, Powell MJ.

J Eukaryot Microbiol. 2018 Mar;65(2):180-190. doi: 10.1111/jeu.12452. Epub 2017 Aug 17.

27.

Monoblepharidomycetes diversity includes new parasitic and saprotrophic species with highly intronized rDNA.

Karpov SA, Mamanazarova KS, Popova OV, Aleoshin VV, James TY, Mamkaeva MA, Tcvetkova VS, Vishnyakov AE, Longcore JE.

Fungal Biol. 2017 Aug;121(8):729-741. doi: 10.1016/j.funbio.2017.05.002. Epub 2017 May 16.

PMID:
28705399
28.

Ultrastructural characterization of the host-parasite interface between Allomyces anomalus (Blastocladiomycota) and Rozella allomycis (Cryptomycota).

Powell MJ, Letcher PM, James TY.

Fungal Biol. 2017 Jun - Jul;121(6-7):561-572. doi: 10.1016/j.funbio.2017.03.002. Epub 2017 Mar 21.

PMID:
28606351
29.

Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life.

Berbee ML, James TY, Strullu-Derrien C.

Annu Rev Microbiol. 2017 Sep 8;71:41-60. doi: 10.1146/annurev-micro-030117-020324. Epub 2017 May 19. Review.

PMID:
28525299
30.

Widespread adenine N6-methylation of active genes in fungi.

Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV.

Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8.

31.

Novel soil-inhabiting clades fill gaps in the fungal tree of life.

Tedersoo L, Bahram M, Puusepp R, Nilsson RH, James TY.

Microbiome. 2017 Apr 8;5(1):42. doi: 10.1186/s40168-017-0259-5.

32.

Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi.

Farrer RA, Martel A, Verbrugghe E, Abouelleil A, Ducatelle R, Longcore JE, James TY, Pasmans F, Fisher MC, Cuomo CA.

Nat Commun. 2017 Mar 21;8:14742. doi: 10.1038/ncomms14742.

33.

The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi.

Hérivaux A, Dugé de Bernonville T, Roux C, Clastre M, Courdavault V, Gastebois A, Bouchara JP, James TY, Latgé JP, Martin F, Papon N.

MBio. 2017 Jan 31;8(1). pii: e01739-16. doi: 10.1128/mBio.01739-16.

34.

Morphological, molecular, and ultrastructural characterization of Rozella rhizoclosmatii, a new species in Cryptomycota.

Letcher PM, Longcore JE, Quandt CA, Leite DD, James TY, Powell MJ.

Fungal Biol. 2017 Jan;121(1):1-10. doi: 10.1016/j.funbio.2016.08.008. Epub 2016 Sep 4.

PMID:
28007212
35.

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.

Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE.

Mycologia. 2016 Sep;108(5):1028-1046.

36.

The frequency of sex in fungi.

Nieuwenhuis BP, James TY.

Philos Trans R Soc Lond B Biol Sci. 2016 Oct 19;371(1706). pii: 20150540. doi: 10.1098/rstb.2015.0540. Review.

37.

Rethinking the role of invertebrate hosts in the life cycle of the amphibian chytridiomycosis pathogen.

Betancourt-Román CM, O'Neil CC, James TY.

Parasitology. 2016 Nov;143(13):1723-1729. Epub 2016 Aug 30.

PMID:
27573338
38.

Fine-scale spatial genetic structure of a fungal parasite of coffee scale insects.

Jackson D, Zemenick AT, Malloure B, Quandt CA, James TY.

J Invertebr Pathol. 2016 Sep;139:34-41. doi: 10.1016/j.jip.2016.07.007. Epub 2016 Jul 19.

PMID:
27449676
39.

Amphibian-killing chytrid in Brazil comprises both locally endemic and globally expanding populations.

Jenkinson TS, Betancourt Román CM, Lambertini C, Valencia-Aguilar A, Rodriguez D, Nunes-de-Almeida CH, Ruggeri J, Belasen AM, da Silva Leite D, Zamudio KR, Longcore JE, Toledo FL, James TY.

Mol Ecol. 2016 Jul;25(13):2978-96. doi: 10.1111/mec.13599. Epub 2016 Mar 21.

40.

Identification of Putative Coffee Rust Mycoparasites via Single-Molecule DNA Sequencing of Infected Pustules.

James TY, Marino JA, Perfecto I, Vandermeer J.

Appl Environ Microbiol. 2015 Nov 13;82(2):631-9. doi: 10.1128/AEM.02639-15. Print 2016 Jan 15.

41.

Disentangling host, pathogen, and environmental determinants of a recently emerged wildlife disease: lessons from the first 15 years of amphibian chytridiomycosis research.

James TY, Toledo LF, Rödder D, da Silva Leite D, Belasen AM, Betancourt-Román CM, Jenkinson TS, Soto-Azat C, Lambertini C, Longo AV, Ruggeri J, Collins JP, Burrowes PA, Lips KR, Zamudio KR, Longcore JE.

Ecol Evol. 2015 Sep 2;5(18):4079-97. doi: 10.1002/ece3.1672. eCollection 2015 Sep.

42.

Extraordinary Genetic Diversity in a Wood Decay Mushroom.

Baranova MA, Logacheva MD, Penin AA, Seplyarskiy VB, Safonova YY, Naumenko SA, Klepikova AV, Gerasimov ES, Bazykin GA, James TY, Kondrashov AS.

Mol Biol Evol. 2015 Oct;32(10):2775-83. doi: 10.1093/molbev/msv153. Epub 2015 Jul 10.

43.

Ecology, Virulence, and Phylogeny of Blastulidium paedophthorum, a Widespread Brood Parasite of Daphnia spp.

Duffy MA, James TY, Longworth A.

Appl Environ Microbiol. 2015 Aug 15;81(16):5486-96. doi: 10.1128/AEM.01369-15. Epub 2015 Jun 5.

44.

Archaeorhizomyces borealis sp. nov. and a sequence-based classification of related soil fungal species.

Menkis A, Urbina H, James TY, Rosling A.

Fungal Biol. 2014 Dec;118(12):943-55. doi: 10.1016/j.funbio.2014.08.005. Epub 2014 Sep 4.

PMID:
25457942
45.

Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites.

Haag KL, James TY, Pombert JF, Larsson R, Schaer TM, Refardt D, Ebert D.

Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15480-5. doi: 10.1073/pnas.1410442111. Epub 2014 Oct 13. Erratum in: Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):E1162.

46.

Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity.

Seplyarskiy VB, Logacheva MD, Penin AA, Baranova MA, Leushkin EV, Demidenko NV, Klepikova AV, Kondrashov FA, Kondrashov AS, James TY.

Mol Biol Evol. 2014 Nov;31(11):3016-25. doi: 10.1093/molbev/msu242. Epub 2014 Aug 18.

47.

Baseline cutaneous bacteria of free-living New Zealand native frogs (Leiopelma archeyi and Leiopelma hochstetteri) and implications for their role in defense against the amphibian chytrid (Batrachochytrium dendrobatidis).

Shaw SD, Berger L, Bell S, Dodd S, James TY, Skerratt LF, Bishop PJ, Speare R.

J Wildl Dis. 2014 Oct;50(4):723-32. doi: 10.7589/2013-07-186. Epub 2014 Aug 14.

PMID:
25121401
48.

Aquastella gen. nov.: a new genus of saprolegniaceous oomycete rotifer parasites related to Aphanomyces, with unique sporangial outgrowths.

Molloy DP, Glockling SL, Siegfried CA, Beakes GW, James TY, Mastitsky SE, Wurdak E, Giamberini L, Gaylo MJ, Nemeth MJ.

Fungal Biol. 2014 Jul;118(7):544-58. doi: 10.1016/j.funbio.2014.01.007. Epub 2014 Feb 12.

PMID:
25088070
49.

A new oomycete species parasitic in nematodes, Chlamydomyzium dictyuchoides sp. nov.: developmental biology and phylogenetic studies.

Beakes GW, Glockling SL, James TY.

Fungal Biol. 2014 Jul;118(7):527-43. doi: 10.1016/j.funbio.2014.04.005. Epub 2014 May 2.

PMID:
25088069
50.

Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.

Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, Grigoriev IV, Spatafora JW, Aime MC.

New Phytol. 2014 Apr;202(2):554-64. doi: 10.1111/nph.12653. Epub 2013 Dec 24.

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