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Items: 1 to 50 of 53

1.

Endothelial cells act as gatekeepers for LTβR-dependent thymocyte emigration.

James KD, Cosway EJ, Lucas B, White AJ, Parnell SM, Carvalho-Gaspar M, Tumanov AV, Anderson G, Jenkinson WE.

J Exp Med. 2018 Dec 3;215(12):2984-2993. doi: 10.1084/jem.20181345. Epub 2018 Nov 13.

2.

T-cell egress from the thymus: Should I stay or should I go?

James KD, Jenkinson WE, Anderson G.

J Leukoc Biol. 2018 Aug;104(2):275-284. doi: 10.1002/JLB.1MR1217-496R. Epub 2018 Feb 27. Review.

3.

Potential role of the mitochondria as a target for the hepatotoxic effects of (-)-epigallocatechin-3-gallate in mice.

James KD, Kennett MJ, Lambert JD.

Food Chem Toxicol. 2018 Jan;111:302-309. doi: 10.1016/j.fct.2017.11.029. Epub 2017 Nov 22.

4.

Redefining thymus medulla specialization for central tolerance.

Cosway EJ, Lucas B, James KD, Parnell SM, Carvalho-Gaspar M, White AJ, Tumanov AV, Jenkinson WE, Anderson G.

J Exp Med. 2017 Nov 6;214(11):3183-3195. doi: 10.1084/jem.20171000. Epub 2017 Aug 22.

5.

In vitro activity of the novel echinocandin CD101 at pH 7 and 4 against Candida spp. isolates from patients with vulvovaginal candidiasis.

Boikov DA, Locke JB, James KD, Bartizal K, Sobel JD.

J Antimicrob Chemother. 2017 May 1;72(5):1355-1358. doi: 10.1093/jac/dkx008.

6.

Pharmacokinetics of the Novel Echinocandin CD101 in Multiple Animal Species.

Ong V, James KD, Smith S, Krishnan BR.

Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e01626-16. doi: 10.1128/AAC.01626-16. Print 2017 Apr.

7.

Structure-Activity Relationships of a Series of Echinocandins and the Discovery of CD101, a Highly Stable and Soluble Echinocandin with Distinctive Pharmacokinetic Properties.

James KD, Laudeman CP, Malkar NB, Krishnan R, Polowy K.

Antimicrob Agents Chemother. 2017 Jan 24;61(2). pii: e01541-16. doi: 10.1128/AAC.01541-16. Print 2017 Feb.

8.

[Anatomical study of pelvic colon].

James YE, Tchangai B, Kassegne I, Keke K, James KD.

Morphologie. 2016 Dec;100(331):216-222. doi: 10.1016/j.morpho.2016.03.001. Epub 2016 May 20. French.

PMID:
27212438
9.

Preclinical Evaluation of the Stability, Safety, and Efficacy of CD101, a Novel Echinocandin.

Ong V, Hough G, Schlosser M, Bartizal K, Balkovec JM, James KD, Krishnan BR.

Antimicrob Agents Chemother. 2016 Oct 21;60(11):6872-6879. doi: 10.1128/AAC.00701-16. Print 2016 Nov.

10.

Lymphotoxin β Receptor Controls T Cell Progenitor Entry to the Thymus.

Lucas B, James KD, Cosway EJ, Parnell SM, Tumanov AV, Ware CF, Jenkinson WE, Anderson G.

J Immunol. 2016 Oct 1;197(7):2665-72. doi: 10.4049/jimmunol.1601189. Epub 2016 Aug 22.

11.

CD101, a novel echinocandin with exceptional stability properties and enhanced aqueous solubility.

Krishnan BR, James KD, Polowy K, Bryant BJ, Vaidya A, Smith S, Laudeman CP.

J Antibiot (Tokyo). 2017 Feb;70(2):130-135. doi: 10.1038/ja.2016.89. Epub 2016 Aug 10.

PMID:
27507631
12.

Control of the thymic medulla and its influence on αβT-cell development.

Lucas B, McCarthy NI, Baik S, Cosway E, James KD, Parnell SM, White AJ, Jenkinson WE, Anderson G.

Immunol Rev. 2016 May;271(1):23-37. doi: 10.1111/imr.12406. Review.

13.

Inter-individual variability contrasts with regional homogeneity in the human brain DNA methylome.

Illingworth RS, Gruenewald-Schneider U, De Sousa D, Webb S, Merusi C, Kerr AR, James KD, Smith C, Walker R, Andrews R, Bird AP.

Nucleic Acids Res. 2015 Jan;43(2):732-44. doi: 10.1093/nar/gku1305. Epub 2015 Jan 8.

14.
15.

Hip pathology in Hutchinson-Gilford progeria syndrome: a report of two children.

Akhbari P, Jha S, James KD, Hinves BL, Buchanan JA.

J Pediatr Orthop B. 2012 Nov;21(6):563-6. doi: 10.1097/BPB.0b013e3283528ddd.

PMID:
22433957
16.

Orphan CpG islands identify numerous conserved promoters in the mammalian genome.

Illingworth RS, Gruenewald-Schneider U, Webb S, Kerr AR, James KD, Turner DJ, Smith C, Harrison DJ, Andrews R, Bird AP.

PLoS Genet. 2010 Sep 23;6(9):e1001134. doi: 10.1371/journal.pgen.1001134.

17.

CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

Thomson JP, Skene PJ, Selfridge J, Clouaire T, Guy J, Webb S, Kerr AR, Deaton A, Andrews R, James KD, Turner DJ, Illingworth R, Bird A.

Nature. 2010 Apr 15;464(7291):1082-6. doi: 10.1038/nature08924.

18.

Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.

Skene PJ, Illingworth RS, Webb S, Kerr AR, James KD, Turner DJ, Andrews R, Bird AP.

Mol Cell. 2010 Feb 26;37(4):457-68. doi: 10.1016/j.molcel.2010.01.030.

19.

FRT-seq: amplification-free, strand-specific transcriptome sequencing.

Mamanova L, Andrews RM, James KD, Sheridan EM, Ellis PD, Langford CF, Ost TW, Collins JE, Turner DJ.

Nat Methods. 2010 Feb;7(2):130-2. doi: 10.1038/nmeth.1417. Epub 2010 Jan 17.

20.

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi.

Perkins TT, Kingsley RA, Fookes MC, Gardner PP, James KD, Yu L, Assefa SA, He M, Croucher NJ, Pickard DJ, Maskell DJ, Parkhill J, Choudhary J, Thomson NR, Dougan G.

PLoS Genet. 2009 Jul;5(7):e1000569. doi: 10.1371/journal.pgen.1000569. Epub 2009 Jul 17.

21.

Chronic actions of a novel oral B-type natriuretic peptide conjugate in normal dogs and acute actions in angiotensin II-mediated hypertension.

Cataliotti A, Chen HH, Schirger JA, Martin FL, Boerrigter G, Costello-Boerrigter LC, James KD, Polowy K, Miller MA, Malkar NB, Bailey KR, Burnett JC Jr.

Circulation. 2008 Oct 21;118(17):1729-36. doi: 10.1161/CIRCULATIONAHA.107.759241. Epub 2008 Oct 6.

22.

Accuracy of hand-held ultrasound scanning in detecting meniscal tears.

Shetty AA, Tindall AJ, James KD, Relwani J, Fernando KW.

J Bone Joint Surg Br. 2008 Aug;90(8):1045-8. doi: 10.1302/0301-620X.90B8.20189.

PMID:
18669960
23.

Long-term follow-up of a hydroxyapatite ceramic-coated threaded cup: an analysis of survival and fixation at up to 15 years.

Tindall A, James KD, Slack R, James C, Shetty AA.

J Arthroplasty. 2007 Dec;22(8):1079-82.

PMID:
18078873
24.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

25.

The landscape of histone modifications across 1% of the human genome in five human cell lines.

Koch CM, Andrews RM, Flicek P, Dillon SC, Karaöz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I.

Genome Res. 2007 Jun;17(6):691-707.

26.

Oral brain natriuretic peptide: a novel strategy for chronic protein therapy for cardiovascular disease.

Cataliotti A, Chen HH, James KD, Burnett JC Jr.

Trends Cardiovasc Med. 2007 Jan;17(1):10-4. Review.

PMID:
17210472
27.

15-year follow-up results of the hydroxyapatite ceramic-coated femoral stem.

Slack R, Tindall A, Shetty AA, James KD, Rand C.

J Orthop Surg (Hong Kong). 2006 Aug;14(2):151-4.

PMID:
16914779
28.

Prevalence and surgical significance of a high-origin anterior tibial artery.

Tindall AJ, Shetty AA, James KD, Middleton A, Fernando KW.

J Orthop Surg (Hong Kong). 2006 Apr;14(1):13-6.

PMID:
16598080
29.

Amphiphilic conjugates of human brain natriuretic peptide designed for oral delivery: in vitro activity screening.

Miller MA, Malkar NB, Severynse-Stevens D, Yarbrough KG, Bednarcik MJ, Dugdell RE, Puskas ME, Krishnan R, James KD.

Bioconjug Chem. 2006 Mar-Apr;17(2):267-74.

PMID:
16536455
30.

Oral human brain natriuretic peptide activates cyclic guanosine 3',5'-monophosphate and decreases mean arterial pressure.

Cataliotti A, Schirger JA, Martin FL, Chen HH, McKie PM, Boerrigter G, Costello-Boerrigter LC, Harty G, Heublein DM, Sandberg SM, James KD, Miller MA, Malkar NB, Polowy K, Burnett JC Jr.

Circulation. 2005 Aug 9;112(6):836-40. Epub 2005 Aug 1.

PMID:
16061734
31.

Results of a hydroxyapatite-coated (Furlong) total hip replacement: a 13- to 15-year follow-up.

Shetty AA, Slack R, Tindall A, James KD, Rand C.

J Bone Joint Surg Br. 2005 Aug;87(8):1050-4.

PMID:
16049237
32.

Congestive heart failure: pharmacological agents and the potential of B-type natriuretic Peptide.

James KD, Cataliotti A, Schirger JA, Plonka S, Burnett JC Jr.

Curr Med Chem. 2005;12(12):1439-47. Review.

PMID:
15974994
33.

A safe zone for the passage of screws through the posterior tibial cortex in tibial tubercle transfer.

Shetty AA, Tindall AJ, Nickolaou N, James KD, Ignotus P.

Knee. 2005 Apr;12(2):99-101.

PMID:
15749443
34.

Comparing wound complication rates following closure of hip wounds with metallic skin staples or subcuticular vicryl suture: a prospective randomised trial.

Shetty AA, Kumar VS, Morgan-Hough C, Georgeu GA, James KD, Nicholl JE.

J Orthop Surg (Hong Kong). 2004 Dec;12(2):191-3.

PMID:
15621905
35.

Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.

Holden MT, Feil EJ, Lindsay JA, Peacock SJ, Day NP, Enright MC, Foster TJ, Moore CE, Hurst L, Atkin R, Barron A, Bason N, Bentley SD, Chillingworth C, Chillingworth T, Churcher C, Clark L, Corton C, Cronin A, Doggett J, Dowd L, Feltwell T, Hance Z, Harris B, Hauser H, Holroyd S, Jagels K, James KD, Lennard N, Line A, Mayes R, Moule S, Mungall K, Ormond D, Quail MA, Rabbinowitsch E, Rutherford K, Sanders M, Sharp S, Simmonds M, Stevens K, Whitehead S, Barrell BG, Spratt BG, Parkhill J.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9786-91. Epub 2004 Jun 22.

36.

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.

Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J.

Nucleic Acids Res. 2003 Nov 15;31(22):6516-23.

37.

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.

Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG.

Nature. 2002 Oct 3;419(6906):527-31.

PMID:
12368867
38.

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Bentley SD, Chater KF, Cerdeño-Tárraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA.

Nature. 2002 May 9;417(6885):141-7.

PMID:
12000953
39.

The decaying genome of Mycobacterium leprae.

Eiglmeier K, Parkhill J, Honoré N, Garnier T, Tekaia F, Telenti A, Klatser P, James KD, Thomson NR, Wheeler PR, Churcher C, Harris D, Mungall K, Barrell BG, Cole ST.

Lepr Rev. 2001 Dec;72(4):387-98. Review.

PMID:
11826475
40.

Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18.

Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG.

Nature. 2001 Oct 25;413(6858):848-52.

PMID:
11677608
41.

Genome sequence of Yersinia pestis, the causative agent of plague.

Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MT, Prentice MB, Sebaihia M, James KD, Churcher C, Mungall KL, Baker S, Basham D, Bentley SD, Brooks K, Cerdeño-Tárraga AM, Chillingworth T, Cronin A, Davies RM, Davis P, Dougan G, Feltwell T, Hamlin N, Holroyd S, Jagels K, Karlyshev AV, Leather S, Moule S, Oyston PC, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG.

Nature. 2001 Oct 4;413(6855):523-7.

42.

Yersinia pestis pFra shows biovar-specific differences and recent common ancestry with a Salmonella enterica serovar Typhi plasmid.

Prentice MB, James KD, Parkhill J, Baker SG, Stevens K, Simmonds MN, Mungall KL, Churcher C, Oyston PC, Titball RW, Wren BW, Wain J, Pickard D, Hien TT, Farrar JJ, Dougan G.

J Bacteriol. 2001 Apr;183(8):2586-94.

43.

Massive gene decay in the leprosy bacillus.

Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honoré N, Garnier T, Churcher C, Harris D, Mungall K, Basham D, Brown D, Chillingworth T, Connor R, Davies RM, Devlin K, Duthoy S, Feltwell T, Fraser A, Hamlin N, Holroyd S, Hornsby T, Jagels K, Lacroix C, Maclean J, Moule S, Murphy L, Oliver K, Quail MA, Rajandream MA, Rutherford KM, Rutter S, Seeger K, Simon S, Simmonds M, Skelton J, Squares R, Squares S, Stevens K, Taylor K, Whitehead S, Woodward JR, Barrell BG.

Nature. 2001 Feb 22;409(6823):1007-11.

PMID:
11234002
44.

Thiophosphorylation of histidine.

Pirrung MC, James KD, Rana VS.

J Org Chem. 2000 Dec 15;65(25):8448-53.

PMID:
11112562
46.

Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491.

Parkhill J, Achtman M, James KD, Bentley SD, Churcher C, Klee SR, Morelli G, Basham D, Brown D, Chillingworth T, Davies RM, Davis P, Devlin K, Feltwell T, Hamlin N, Holroyd S, Jagels K, Leather S, Moule S, Mungall K, Quail MA, Rajandream MA, Rutherford KM, Simmonds M, Skelton J, Whitehead S, Spratt BG, Barrell BG.

Nature. 2000 Mar 30;404(6777):502-6.

PMID:
10761919
47.

The fidelity of template-directed oligonucleotide ligation and the inevitability of polymerase function.

James KD, Ellington AD.

Orig Life Evol Biosph. 1999 Aug;29(4):375-90.

PMID:
10472627
48.

The fidelity of template-directed oligonucleotide ligation and its relevance to DNA computation.

James KD, Boles AR, Henckel D, Ellington AD.

Nucleic Acids Res. 1998 Nov 15;26(22):5203-11.

50.

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