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Corrigendum to "Phylogenetic evaluation of Amynthas earthworms from South China reveals the initial ancestral state of spermathecae" [ Molecular Phylogenetics and Evolution Volume 115, October 2017, Pages 106-114].

Sun J, James SW, Jiang J, Yao B, Zhang L, Liu M, Qiu J, Hu F.

Mol Phylogenet Evol. 2019 Jan;130:435. doi: 10.1016/j.ympev.2018.11.009. No abstract available.


Earthworm diversity in Rio Grande do Sul, Brazil.

Steffen GPK, Steffen RB, Bartz MLC, James SW, Jacques RJS, Brown GG, Antoniolli ZI.

Zootaxa. 2018 Oct 4;4496(1):562-575. doi: 10.11646/zootaxa.4496.1.43.


New species-group taxa of Glossoscolex (Clitellata: Glossoscolecidae) from Rio Grande do Sul, Brazil.

Bartz MLC, James SW, Steffen GPK, Antoniolli Z, Steffen RB, Brown GG.

Zootaxa. 2018 Oct 4;4496(1):548-561. doi: 10.11646/zootaxa.4496.1.42.


Earthworm species in various land use systems in the Campos Gerais region of Lapa, Paraná, Brazil.

Demetrio WC, Santos A, Ferreira T, Nadolny H, Cardoso GBX, Torres JLM, Dudas R, De Oliveira V, Barreto JO, James SW, Da Silva E, Brown GG, Bartz MLC.

Zootaxa. 2018 Oct 4;4496(1):503-516. doi: 10.11646/zootaxa.4496.1.39.


Additions to Andiorrhinus (Turedrilus) (Rhinodrilidae, Clitellata) from Eastern Amazonia.

HernÁndez-garcÍa LM, Bartz ML, Burgos-Guerrero JE, Sousa SC, Rousseau GX, James SW.

Zootaxa. 2018 Oct 4;4496(1):481-491. doi: 10.11646/zootaxa.4496.1.37.


Brasilisia n. gen. and Arraia n. gen., two new genera of Ocnerodrilidae (Annelida, Clitellata, Oligochaeta) from Eastern Amazonia, Brazil.

HernÁndez-garcÍa LM, Burgos-Guerrero JE, Rousseau GX, James SW.

Zootaxa. 2018 Oct 4;4496(1):472-480. doi: 10.11646/zootaxa.4496.1.36.


Three new species of Holoscolex (Clitellata, Glossoscolecidae) from the Gurupi Biological Reserve, last forest remnant of the Belém Endemism Area, Eastern Amazon.

HernÁndez-garcÍa LM, Burgos-Guerrero JE, Santos BTSD, Rousseau GX, James SW.

Zootaxa. 2018 Oct 4;4496(1):459-471. doi: 10.11646/zootaxa.4496.1.35.


Nine new species of the "aeruginosus"-group in Amynthas (Clitellata: Megascolecidae) from Nam Et-Phouley National protected Area, Laos.

Hong Y, Inkhavilay K, James SW.

Zootaxa. 2018 Oct 4;4496(1):238-250. doi: 10.11646/zootaxa.4496.1.19.


Performance Standards for Biological Threat Agent Assays for Department of Defense Applications.

Beck L, Coates SG, Gee J, Hadfield T, Jackson P, Keim P, Lindler L, Olson V, Ostlund E, Roberto F, Samuel J, Sharma S, Tallent S, Wagner DM.

J AOAC Int. 2018 Aug 22. doi: 10.5740/jaoacint.spada_ss. [Epub ahead of print]


Quantitative Yeast Genetic Interaction Profiling of Bacterial Effector Proteins Uncovers a Role for the Human Retromer in Salmonella Infection.

Patrick KL, Wojcechowskyj JA, Bell SL, Riba MN, Jing T, Talmage S, Xu P, Cabello AL, Xu J, Shales M, Jimenez-Morales D, Ficht TA, de Figueiredo P, Samuel JE, Li P, Krogan NJ, Watson RO.

Cell Syst. 2018 Sep 26;7(3):323-338.e6. doi: 10.1016/j.cels.2018.06.010. Epub 2018 Aug 1.


Identification and characterization of arginine finger-like motifs, and endosome-lysosome basolateral sorting signals within the Coxiella burnetii type IV secreted effector protein CirA.

Weber MM, Faris R, van Schaik EJ, Samuel JE.

Microbes Infect. 2018 May;20(5):302-307. doi: 10.1016/j.micinf.2017.12.013. Epub 2018 Jan 10.


Evaluation of Radiation Shielding Properties of the Polyvinyl Alcohol/Iron Oxide Polymer Composite.

Srinivasan K, Samuel EJJ.

J Med Phys. 2017 Oct-Dec;42(4):273-278. doi: 10.4103/jmp.JMP_54_17.


New species of <i>Andiorrhinus</i> Cognetti, 1908 (Oligochaeta: Rhinodrilidae) from Venezuela and Brazil.

Feijoo AM, Brown GG, James SW.

Zootaxa. 2017 Dec 8;4363(1):55-78. doi: 10.11646/zootaxa.4363.1.2.


Correction: Human alpha defensin 5 is a candidate biomarker to delineate inflammatory bowel disease.

Williams AD, Korolkova OY, Sakwe AM, Geiger TM, James SD, Muldoon RL, Herline AJ, Goodwin JS, Izban MG, Washington MK, Smoot DT, Ballard BR, Gazouli M, M'Koma AE.

PLoS One. 2017 Dec 6;12(12):e0189551. doi: 10.1371/journal.pone.0189551. eCollection 2017.


Impact of tumour motion compensation and delineation methods on FDG PET-based dose painting plan quality for NSCLC radiation therapy.

Thomas HM, Kinahan PE, Samuel JJE, Bowen SR.

J Med Imaging Radiat Oncol. 2018 Feb;62(1):81-90. doi: 10.1111/1754-9485.12693. Epub 2017 Nov 28.


The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning.

Conrado AC, Arruda H, Stanton DWG, James SW, Peter Kille, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L.

Zookeys. 2017 Aug 8;(688):1-13. doi: 10.3897/zookeys.688.13721. eCollection 2017.


The Use of Reverse Vaccinology in the Design and Construction of Nano-glycoconjugate Vaccines against Burkholderia pseudomallei.

Muruato LA, Tapia D, Hatcher CL, Kalita M, Brett PJ, Gregory AE, Samuel JE, Titball RW, Torres AG.

Clin Vaccine Immunol. 2017 Sep 13. pii: CVI.00206-17. doi: 10.1128/CVI.00206-17. [Epub ahead of print]


Erratum to: Phylogenomic analyses of Crassiclitellata support major Northern and Southern hemisphere clades and a Pangaean origin for earthworms.

Anderson FE, Williams BW, Horn KM, Erséus C, Halanych KM, Santos SR, James SW.

BMC Evol Biol. 2017 Aug 25;17(1):204. doi: 10.1186/s12862-017-1042-8. No abstract available.


Human alpha defensin 5 is a candidate biomarker to delineate inflammatory bowel disease.

Williams AD, Korolkova OY, Sakwe AM, Geiger TM, James SD, Muldoon RL, Herline AJ, Goodwin JS, Izban MG, Washington MK, Smoot DT, Ballard BR, Gazouli M, M'Koma AE.

PLoS One. 2017 Aug 17;12(8):e0179710. doi: 10.1371/journal.pone.0179710. eCollection 2017. Erratum in: PLoS One. 2017 Dec 6;12 (12 ):e0189551.


Phylogenetic evaluation of Amynthas earthworms from South China reveals the initial ancestral state of spermathecae.

Sun J, James SW, Jiang J, Yao B, Zhang L, Liu M, Qiu J, Hu F.

Mol Phylogenet Evol. 2017 Oct;115:106-114. doi: 10.1016/j.ympev.2017.07.026. Epub 2017 Jul 29. Erratum in: Mol Phylogenet Evol. 2019 Jan;130:435.


New earthworm species of <i>Righiodrilus</i> (Clitellata, Glossoscolecidae) from eastern Amazonia.

Santos BTSD, Bartz MLC, Hernández-García LM, Rousseau GX, Martins MB, James SW.

Zootaxa. 2017 Mar 10;4242(2):392-400. doi: 10.11646/zootaxa.4242.2.11.


Phylogenomic analyses of Crassiclitellata support major Northern and Southern Hemisphere clades and a Pangaean origin for earthworms.

Anderson FE, Williams BW, Horn KM, Erséus C, Halanych KM, Santos SR, James SW.

BMC Evol Biol. 2017 May 30;17(1):123. doi: 10.1186/s12862-017-0973-4. Erratum in: BMC Evol Biol. 2017 Aug 25;17 (1):204.


Global Reprogramming of Host Kinase Signaling in Response to Fungal Infection.

Pandey A, Ding SL, Qin QM, Gupta R, Gomez G, Lin F, Feng X, Fachini da Costa L, Chaki SP, Katepalli M, Case ED, van Schaik EJ, Sidiq T, Khalaf O, Arenas A, Kobayashi KS, Samuel JE, Rivera GM, Alaniz RC, Sze SH, Qian X, Brown WJ, Rice-Ficht A, Russell WK, Ficht TA, de Figueiredo P.

Cell Host Microbe. 2017 May 10;21(5):637-649.e6. doi: 10.1016/j.chom.2017.04.008.


The SCID Mouse Model for Identifying Virulence Determinants in Coxiella burnetii.

van Schaik EJ, Case ED, Martinez E, Bonazzi M, Samuel JE.

Front Cell Infect Microbiol. 2017 Feb 3;7:25. doi: 10.3389/fcimb.2017.00025. eCollection 2017.


New species of the earthworm genus <i>Zapatadrilus</i> (Clitellata, Acanthodrilidae) from northern Mexico.

Cervantes G, Fragoso C, Monteros AE, Sánchez-Ramos G, Lara-Villalón M, Yañez-Pacheco MJ, Lázaro-Castellanos JO, James SW.

Zootaxa. 2016 Nov 10;4189(2):zootaxa.4189.2.7. doi: 10.11646/zootaxa.4189.2.7.


New species of Dichogaster Beddard, 1888 (Clitellata: Benhamiidae) with additional records of earthworms from Guadeloupe (French West Indies).

James SW, Gamiette F.

Zootaxa. 2016 Oct 25;4178(3):391-408. doi: 10.11646/zootaxa.4178.3.5.


Identification of Coxiella burnetii CD8+ T-Cell Epitopes and Delivery by Attenuated Listeria monocytogenes as a Vaccine Vector in a C57BL/6 Mouse Model.

Xiong X, Jiao J, Gregory AE, Wang P, Bi Y, Wang X, Jiang Y, Wen B, Portnoy DA, Samuel JE, Chen C.

J Infect Dis. 2017 May 15;215(10):1580-1589. doi: 10.1093/infdis/jiw470.


Accuracy in automatic image registration between MV cone beam computed tomography and planning kV computed tomography in image guided radiotherapy.

Kanakavelu N, Samuel EJ.

Rep Pract Oncol Radiother. 2016 Sep-Oct;21(5):487-94. doi: 10.1016/j.rpor.2016.07.001. Epub 2016 Jul 22.


Seven new species of the earthworm genus Metaphire Sims & Easton, 1972 from Thailand (Clitellata: Megascolecidae).

Bantaowong U, Chanabun R, James SW, Panha S.

Zootaxa. 2016 May 30;4117(1):63-84. doi: 10.11646/zootaxa.4117.1.3.


The Type IV Secretion System Effector Protein CirA Stimulates the GTPase Activity of RhoA and Is Required for Virulence in a Mouse Model of Coxiella burnetii Infection.

Weber MM, Faris R, van Schaik EJ, McLachlan JT, Wright WU, Tellez A, Roman VA, Rowin K, Case ED, Luo ZQ, Samuel JE.

Infect Immun. 2016 Aug 19;84(9):2524-33. doi: 10.1128/IAI.01554-15. Print 2016 Sep.


Current scenario of biomedical aspect of metal-based nanoparticles on gel dosimetry.

Titus D, Samuel EJ, Mohana Roopan S.

Appl Microbiol Biotechnol. 2016 Jun;100(11):4803-16. doi: 10.1007/s00253-016-7489-5. Epub 2016 Apr 21. Review.


Contrasting Lifestyles Within the Host Cell.

Di Russo Case E, Samuel JE.

Microbiol Spectr. 2016 Feb;4(1). doi: 10.1128/microbiolspec.VMBF-0014-2015. Review.


Space: A Final Frontier for Vacuolar Pathogens.

Case ED, Smith JA, Ficht TA, Samuel JE, de Figueiredo P.

Traffic. 2016 May;17(5):461-74. doi: 10.1111/tra.12382. Epub 2016 Feb 24. Review.


Modulation of the host transcriptome by Coxiella burnetii nuclear effector Cbu1314.

Weber MM, Faris R, McLachlan J, Tellez A, Wright WU, Galvan G, Luo ZQ, Samuel JE.

Microbes Infect. 2016 May;18(5):336-45. doi: 10.1016/j.micinf.2016.01.003. Epub 2016 Jan 28.


AOAC SMPR 2015.011.

Samuel J, Beck L, Appler J, Ballin J, Bushner D, Cahall R, Davenport M, Egan C, Gebhardt J, Hadfield T, Hale M, Hopkins K, Kato C, Kayatani A, Kesterson K, Khan S, Kiss K, Lednicky J, Naraghi-Arani P, O'Brien S, Ong K, Rebeil R, Roth K, Scheckelhoff M, Yost E, Coates S.

J AOAC Int. 2016 Feb 1;99(1):298-302. doi: 10.5740/ No abstract available.


Surfactant Protein D Binds to Coxiella burnetii and Results in a Decrease in Interactions with Murine Alveolar Macrophages.

Soltysiak KA, van Schaik EJ, Samuel JE.

PLoS One. 2015 Sep 14;10(9):e0136699. doi: 10.1371/journal.pone.0136699. eCollection 2015.


Cloning, expression, and characterization of a Coxiella burnetii Cu/Zn Superoxide dismutase.

Brennan RE, Kiss K, Baalman R, Samuel JE.

BMC Microbiol. 2015 May 12;15:99. doi: 10.1186/s12866-015-0430-8.


Assessment and evaluation of MV image guidance system performance in radiotherapy.

Kanakavelu N, Samuel EJ.

Rep Pract Oncol Radiother. 2015 May-Jun;20(3):188-97. doi: 10.1016/j.rpor.2015.01.002. Epub 2015 Feb 7.


New species of Pheretima (Oligochaeta: Megascolecidae) from the Mt. Malindang Range, Mindanao Island, Philippines.

Aspe NM, James SW.

Zootaxa. 2014 Nov 7;3881(5):401-39. doi: 10.11646/zootaxa.3881.5.1.


Adaptive threshold segmentation of pituitary adenomas from FDG PET images for radiosurgery.

Thomas T HM, Devadhas D, Heck DK, Chacko AG, Rebekah G, Oommen R, Samuel EJ.

J Appl Clin Med Phys. 2014 Nov 8;15(6):4952. doi: 10.1120/jacmp.v15i6.4952.


Underground evolution: new roots for the old tree of lumbricid earthworms.

Domínguez J, Aira M, Breinholt JW, Stojanovic M, James SW, Pérez-Losada M.

Mol Phylogenet Evol. 2015 Feb;83:7-19. doi: 10.1016/j.ympev.2014.10.024. Epub 2014 Nov 15.


Identification of pathologic features associated with "ulcerative colitis-like" Crohn's disease.

James SD, Wise PE, Zuluaga-Toro T, Schwartz DA, Washington MK, Shi C.

World J Gastroenterol. 2014 Sep 28;20(36):13139-45. doi: 10.3748/wjg.v20.i36.13139.


Highly interlocked anion-bridged supramolecular networks from interrupted imidazole-urea gels.

James SJ, Perrin A, Jones CD, Yufit DS, Steed JW.

Chem Commun (Camb). 2014 Nov 4;50(85):12851-4. doi: 10.1039/c4cc05789a.


Tripping on acid: trans-kingdom perspectives on biological acids in immunity and pathogenesis.

Criscitiello MF, Dickman MB, Samuel JE, de Figueiredo P.

PLoS Pathog. 2013;9(7):e1003402. doi: 10.1371/journal.ppat.1003402. Epub 2013 Jul 18. Review. No abstract available.


Identification of Coxiella burnetii type IV secretion substrates required for intracellular replication and Coxiella-containing vacuole formation.

Weber MM, Chen C, Rowin K, Mertens K, Galvan G, Zhi H, Dealing CM, Roman VA, Banga S, Tan Y, Luo ZQ, Samuel JE.

J Bacteriol. 2013 Sep;195(17):3914-24.


Molecular pathogenesis of the obligate intracellular bacterium Coxiella burnetii.

van Schaik EJ, Chen C, Mertens K, Weber MM, Samuel JE.

Nat Rev Microbiol. 2013 Aug;11(8):561-73. doi: 10.1038/nrmicro3049. Epub 2013 Jun 24. Review.


When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii.

Pearson T, Hornstra HM, Sahl JW, Schaack S, Schupp JM, Beckstrom-Sternberg SM, O'Neill MW, Priestley RA, Champion MD, Beckstrom-Sternberg JS, Kersh GJ, Samuel JE, Massung RF, Keim P.

Syst Biol. 2013 Sep;62(5):752-62. doi: 10.1093/sysbio/syt038. Epub 2013 Jun 4.


TR3 modulates platinum resistance in ovarian cancer.

Wilson AJ, Liu AY, Roland J, Adebayo OB, Fletcher SA, Slaughter JC, Saskowski J, Crispens MA, Jones HW 3rd, James S, Fadare O, Khabele D.

Cancer Res. 2013 Aug 1;73(15):4758-69. doi: 10.1158/0008-5472.CAN-12-4560. Epub 2013 May 29.

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