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Items: 40

1.

Best practices for high data-rate macromolecular crystallography (HDRMX).

Bernstein HJ, Andrews LC, Diaz JA Jr, Jakoncic J, Nguyen T, Sauter NK, Soares AS, Wei JY, Wlodek MR, Xerri MA.

Struct Dyn. 2020 Jan 9;7(1):014302. doi: 10.1063/1.5128498. eCollection 2020 Jan.

2.

High-resolution structure of intramolecularly proteolyzed human mucin-1 SEA domain.

Noguera ME, Jakoncic J, Ermácora MR.

Biochim Biophys Acta Proteins Proteom. 2020 Mar;1868(3):140361. doi: 10.1016/j.bbapap.2020.140361. Epub 2020 Jan 7.

PMID:
31923589
3.

Novel T9 loop conformation of filamenting temperature-sensitive mutant Z from Mycobacterium tuberculosis.

Lazo EO, Jakoncic J, RoyChowdhury S, Awasthi D, Ojima I.

Acta Crystallogr F Struct Biol Commun. 2019 May 1;75(Pt 5):359-367. doi: 10.1107/S2053230X19004618. Epub 2019 Apr 24.

PMID:
31045565
4.

Getting the Most Out of Your Crystals: Data Collection at the New High-Flux, Microfocus MX Beamlines at NSLS-II.

Miller MS, Maheshwari S, Shi W, Gao Y, Chu N, Soares AS, Cole PA, Amzel LM, Fuchs MR, Jakoncic J, Gabelli SB.

Molecules. 2019 Jan 30;24(3). pii: E496. doi: 10.3390/molecules24030496.

5.

The structures of penicillin-binding protein 4 (PBP4) and PBP5 from Enterococci provide structural insights into β-lactam resistance.

Moon TM, D'Andréa ÉD, Lee CW, Soares A, Jakoncic J, Desbonnet C, Garcia-Solache M, Rice LB, Page R, Peti W.

J Biol Chem. 2018 Nov 30;293(48):18574-18584. doi: 10.1074/jbc.RA118.006052. Epub 2018 Oct 24.

6.

High-speed raster-scanning synchrotron serial microcrystallography with a high-precision piezo-scanner.

Gao Y, Xu W, Shi W, Soares A, Jakoncic J, Myers S, Martins B, Skinner J, Liu Q, Bernstein H, McSweeney S, Nazaretski E, Fuchs MR.

J Synchrotron Radiat. 2018 Sep 1;25(Pt 5):1362-1370. doi: 10.1107/S1600577518010354. Epub 2018 Aug 23.

7.

Structural Insights into the Induced-fit Inhibition of Fascin by a Small-Molecule Inhibitor.

Huang J, Dey R, Wang Y, Jakoncic J, Kurinov I, Huang XY.

J Mol Biol. 2018 Apr 27;430(9):1324-1335. doi: 10.1016/j.jmb.2018.03.009. Epub 2018 Mar 21.

8.

Loss of a Functionally and Structurally Distinct ld-Transpeptidase, LdtMt5, Compromises Cell Wall Integrity in Mycobacterium tuberculosis.

Brammer Basta LA, Ghosh A, Pan Y, Jakoncic J, Lloyd EP, Townsend CA, Lamichhane G, Bianchet MA.

J Biol Chem. 2015 Oct 16;290(42):25670-85. doi: 10.1074/jbc.M115.660753. Epub 2015 Aug 24.

9.

Crystallization of lysozyme with (R)-, (S)- and (RS)-2-methyl-2,4-pentanediol.

Stauber M, Jakoncic J, Berger J, Karp JM, Axelbaum A, Sastow D, Buldyrev SV, Hrnjez BJ, Asherie N.

Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):427-41. doi: 10.1107/S1399004714025061. Epub 2015 Feb 26.

10.

Small-molecule modulators of methyl-lysine binding for the CBX7 chromodomain.

Ren C, Morohashi K, Plotnikov AN, Jakoncic J, Smith SG, Li J, Zeng L, Rodriguez Y, Stojanoff V, Walsh M, Zhou MM.

Chem Biol. 2015 Feb 19;22(2):161-8. doi: 10.1016/j.chembiol.2014.11.021. Epub 2015 Feb 5.

11.

X-ray structure of the mature ectodomain of phogrin.

Noguera ME, Primo ME, Jakoncic J, Poskus E, Solimena M, Ermácora MR.

J Struct Funct Genomics. 2015 Mar;16(1):1-9. doi: 10.1007/s10969-014-9191-0. Epub 2014 Nov 26.

PMID:
25421040
12.

Regulation of the NaV1.5 cytoplasmic domain by calmodulin.

Gabelli SB, Boto A, Kuhns VH, Bianchet MA, Farinelli F, Aripirala S, Yoder J, Jakoncic J, Tomaselli GF, Amzel LM.

Nat Commun. 2014 Nov 5;5:5126. doi: 10.1038/ncomms6126.

13.

Structure-based functional characterization of repressor of toxin (Rot), a central regulator of Staphylococcus aureus virulence.

Killikelly A, Benson MA, Ohneck EA, Sampson JM, Jakoncic J, Spurrier B, Torres VJ, Kong XP.

J Bacteriol. 2015 Jan 1;197(1):188-200. doi: 10.1128/JB.02317-14. Epub 2014 Oct 20.

14.

Structure of RPA32 bound to the N-terminus of SMARCAL1 redefines the binding interface between RPA32 and its interacting proteins.

Xie S, Lu Y, Jakoncic J, Sun H, Xia J, Qian C.

FEBS J. 2014 Aug;281(15):3382-96. doi: 10.1111/febs.12867. Epub 2014 Jul 1.

15.

Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.

Economou NJ, Zentner IJ, Lazo E, Jakoncic J, Stojanoff V, Weeks SD, Grasty KC, Cocklin S, Loll PJ.

Acta Crystallogr D Biol Crystallogr. 2013 Apr;69(Pt 4):520-33. doi: 10.1107/S0907444912050469. Epub 2013 Mar 14.

16.

Potent elastase inhibitors from cyanobacteria: structural basis and mechanisms mediating cytoprotective and anti-inflammatory effects in bronchial epithelial cells.

Salvador LA, Taori K, Biggs JS, Jakoncic J, Ostrov DA, Paul VJ, Luesch H.

J Med Chem. 2013 Feb 14;56(3):1276-90. doi: 10.1021/jm3017305. Epub 2013 Jan 28.

17.

Structure-guided studies of the SHP-1/JAK1 interaction provide new insights into phosphatase catalytic domain substrate recognition.

Alicea-Velázquez NL, Jakoncic J, Boggon TJ.

J Struct Biol. 2013 Mar;181(3):243-51. doi: 10.1016/j.jsb.2012.12.009. Epub 2013 Jan 4.

18.

Molecular mechanism of fascin function in filopodial formation.

Yang S, Huang FK, Huang J, Chen S, Jakoncic J, Leo-Macias A, Diaz-Avalos R, Chen L, Zhang JJ, Huang XY.

J Biol Chem. 2013 Jan 4;288(1):274-84. doi: 10.1074/jbc.M112.427971. Epub 2012 Nov 26.

19.

Diversity and catalytic potential of PAH-specific ring-hydroxylating dioxygenases from a hydrocarbon-contaminated soil.

Martin F, Malagnoux L, Violet F, Jakoncic J, Jouanneau Y.

Appl Microbiol Biotechnol. 2013 Jun;97(11):5125-35. doi: 10.1007/s00253-012-4335-2. Epub 2012 Aug 19.

20.

Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase.

Aripirala S, Szajnman SH, Jakoncic J, Rodriguez JB, Docampo R, Gabelli SB, Amzel LM.

J Med Chem. 2012 Jul 26;55(14):6445-54. doi: 10.1021/jm300425y. Epub 2012 Jul 5.

21.

Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire.

Ostrov DA, Grant BJ, Pompeu YA, Sidney J, Harndahl M, Southwood S, Oseroff C, Lu S, Jakoncic J, de Oliveira CA, Yang L, Mei H, Shi L, Shabanowitz J, English AM, Wriston A, Lucas A, Phillips E, Mallal S, Grey HM, Sette A, Hunt DF, Buus S, Peters B.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9959-64. doi: 10.1073/pnas.1207934109. Epub 2012 May 29.

22.

Paramecium bursaria chlorella virus 1 encodes a polyamine acetyltransferase.

Charlop-Powers Z, Jakoncic J, Gurnon JR, Van Etten JL, Zhou MM.

J Biol Chem. 2012 Mar 16;287(12):9547-51. doi: 10.1074/jbc.C111.337816. Epub 2012 Jan 25.

23.

UHRF1 double tudor domain and the adjacent PHD finger act together to recognize K9me3-containing histone H3 tail.

Xie S, Jakoncic J, Qian C.

J Mol Biol. 2012 Jan 13;415(2):318-28. doi: 10.1016/j.jmb.2011.11.012. Epub 2011 Nov 12.

PMID:
22100450
24.

Protein-protein interactions in crystals of the human receptor-type protein tyrosine phosphatase ICA512 ectodomain.

Primo ME, Jakoncic J, Noguera ME, Risso VA, Sosa L, Sica MP, Solimena M, Poskus E, Ermácora MR.

PLoS One. 2011;6(9):e24191. doi: 10.1371/journal.pone.0024191. Epub 2011 Sep 15.

25.

Optics Concept for a Pair of Undulator Beamlines for MX.

Berman LE, Allaire M, Chance MR, Hendrickson WA, Héroux A, Jakoncic J, Liu Q, Orville AM, Robinson HH, Schneider DK, Shi W, Soares AS, Stojanoff V, Stoner-Ma D, Sweet RM.

Nucl Instrum Methods Phys Res A. 2011 Sep 1;649(1):131-135.

26.

From screen to structure with a harvestable microfluidic device.

Stojanoff V, Jakoncic J, Oren DA, Nagarajan V, Poulsen JC, Adams-Cioaba MA, Bergfors T, Sommer MO.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Aug 1;67(Pt 8):971-5. doi: 10.1107/S1744309111024456. Epub 2011 Jul 26.

27.

Structural studies of the Nudix GDP-mannose hydrolase from E. coli reveals a new motif for mannose recognition.

Boto AN, Xu W, Jakoncic J, Pannuri A, Romeo T, Bessman MJ, Gabelli SB, Amzel LM.

Proteins. 2011 Aug;79(8):2455-66. doi: 10.1002/prot.23069. Epub 2011 Jun 2.

28.

The 1.35 A resolution structure of the phosphatase domain of the suppressor of T-cell receptor signaling protein in complex with sulfate.

Jakoncic J, Sondgeroth B, Carpino N, Nassar N.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jun 1;66(Pt 6):643-7. doi: 10.1107/S1744309110014259. Epub 2010 May 25.

29.

Migrastatin analogues target fascin to block tumour metastasis.

Chen L, Yang S, Jakoncic J, Zhang JJ, Huang XY.

Nature. 2010 Apr 15;464(7291):1062-6. doi: 10.1038/nature08978. Erratum in: Nature. 2011 Aug 11;476(7359):240.

30.

Structures of the phosphorylated and VO(3)-bound 2H-phosphatase domain of Sts-2.

Chen Y, Jakoncic J, Parker KA, Carpino N, Nassar N.

Biochemistry. 2009 Sep 1;48(34):8129-35. doi: 10.1021/bi9008648.

31.

Structural and functional characterization of the 2H-phosphatase domain of Sts-2 reveals an acid-dependent phosphatase activity.

Chen Y, Jakoncic J, Carpino N, Nassar N.

Biochemistry. 2009 Mar 3;48(8):1681-90. doi: 10.1021/bi802219n.

32.

Structure and hemimethylated CpG binding of the SRA domain from human UHRF1.

Qian C, Li S, Jakoncic J, Zeng L, Walsh MJ, Zhou MM.

J Biol Chem. 2008 Dec 12;283(50):34490-4. doi: 10.1074/jbc.C800169200. Epub 2008 Oct 22.

33.

Structural and functional characterization of the c-terminal domain of the ecdysteroid phosphate phosphatase from bombyx mori reveals a new enzymatic activity.

Chen Y, Jakoncic J, Wang J, Zheng X, Carpino N, Nassar N.

Biochemistry. 2008 Nov 18;47(46):12135-45. doi: 10.1021/bi801318w. Epub 2008 Oct 21.

34.

A bony fish immunological receptor of the NITR multigene family mediates allogeneic recognition.

Cannon JP, Haire RN, Magis AT, Eason DD, Winfrey KN, Hernandez Prada JA, Bailey KM, Jakoncic J, Litman GW, Ostrov DA.

Immunity. 2008 Aug 15;29(2):228-37. doi: 10.1016/j.immuni.2008.05.018. Epub 2008 Jul 31.

35.

Structure of the mature ectodomain of the human receptor-type protein-tyrosine phosphatase IA-2.

Primo ME, Klinke S, Sica MP, Goldbaum FA, Jakoncic J, Poskus E, Ermácora MR.

J Biol Chem. 2008 Feb 22;283(8):4674-81. Epub 2007 Nov 29.

36.

The crystal structure of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1.

Jakoncic J, Jouanneau Y, Meyer C, Stojanoff V.

FEBS J. 2007 May;274(10):2470-81. Epub 2007 Apr 19.

37.

The catalytic pocket of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1.

Jakoncic J, Jouanneau Y, Meyer C, Stojanoff V.

Biochem Biophys Res Commun. 2007 Jan 26;352(4):861-6. Epub 2006 Dec 4.

38.

Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons.

Jouanneau Y, Meyer C, Jakoncic J, Stojanoff V, Gaillard J.

Biochemistry. 2006 Oct 10;45(40):12380-91.

PMID:
17014090
39.

Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus.

Hernández Prada JA, Haire RN, Allaire M, Jakoncic J, Stojanoff V, Cannon JP, Litman GW, Ostrov DA.

Nat Immunol. 2006 Aug;7(8):875-82. Epub 2006 Jun 25.

40.

Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.

Sainz G, Jakoncic J, Sieker LC, Stojanoff V, Sanishvili N, Asso M, Bertrand P, Armengaud J, Jouanneau Y.

J Biol Inorg Chem. 2006 Mar;11(2):235-46. Epub 2006 Jan 10.

PMID:
16402206

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