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Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis.

Thissen JB, Be NA, McLoughlin K, Gardner S, Rack PG, Shapero MH, Rowland RRR, Slezak T, Jaing CJ.

PLoS One. 2019 Feb 8;14(2):e0212045. doi: 10.1371/journal.pone.0212045. eCollection 2019.


A novel variant of torque teno virus 7 identified in patients with Kawasaki disease.

Thissen JB, Isshiki M, Jaing C, Nagao Y, Lebron Aldea D, Allen JE, Izui M, Slezak TR, Ishida T, Sano T.

PLoS One. 2018 Dec 28;13(12):e0209683. doi: 10.1371/journal.pone.0209683. eCollection 2018.


Double-stranded viral RNA persists in vitro and in vivo during prolonged infection of porcine reproductive and respiratory syndrome virus.

Guo R, Shang P, Carrillo CA, Sun Z, Lakshmanappa YS, Yan X, Renukaradhya GJ, McGill J, Jaing CJ, Niederwerder MC, Rowland RRR, Fang Y.

Virology. 2018 Nov;524:78-89. doi: 10.1016/j.virol.2018.08.006. Epub 2018 Aug 27.


Airborne Bacteria in Earth's Lower Stratosphere Resemble Taxa Detected in the Troposphere: Results From a New NASA Aircraft Bioaerosol Collector (ABC).

Smith DJ, Ravichandar JD, Jain S, Griffin DW, Yu H, Tan Q, Thissen J, Lusby T, Nicoll P, Shedler S, Martinez P, Osorio A, Lechniak J, Choi S, Sabino K, Iverson K, Chan L, Jaing C, McGrath J.

Front Microbiol. 2018 Aug 14;9:1752. doi: 10.3389/fmicb.2018.01752. eCollection 2018.


Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces.

Urbaniak C, Sielaff AC, Frey KG, Allen JE, Singh N, Jaing C, Wheeler K, Venkateswaran K.

Sci Rep. 2018 Jan 16;8(1):814. doi: 10.1038/s41598-017-18506-4.


Nonstructural proteins nsp2TF and nsp2N of porcine reproductive and respiratory syndrome virus (PRRSV) play important roles in suppressing host innate immune responses.

Li Y, Shang P, Shyu D, Carrillo C, Naraghi-Arani P, Jaing CJ, Renukaradhya GJ, Firth AE, Snijder EJ, Fang Y.

Virology. 2018 Apr;517:164-176. doi: 10.1016/j.virol.2017.12.017. Epub 2018 Jan 8.


Increased microbiome diversity at the time of infection is associated with improved growth rates of pigs after co-infection with porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circovirus type 2 (PCV2).

Ober RA, Thissen JB, Jaing CJ, Cino-Ozuna AG, Rowland RRR, Niederwerder MC.

Vet Microbiol. 2017 Sep;208:203-211. doi: 10.1016/j.vetmic.2017.06.023. Epub 2017 Aug 18.


Erratum to: Whole metagenome profiles of particulates collected from the International Space Station.

Be NA, Avila-Herrera A, Allen JE, Singh N, Sielaff AC, Jaing C, Venkateswaran K.

Microbiome. 2017 Sep 1;5(1):111. doi: 10.1186/s40168-017-0330-2. No abstract available.


Gene expression analysis of whole blood RNA from pigs infected with low and high pathogenic African swine fever viruses.

Jaing C, Rowland RRR, Allen JE, Certoma A, Thissen JB, Bingham J, Rowe B, White JR, Wynne JW, Johnson D, Gaudreault NN, Williams DT.

Sci Rep. 2017 Aug 31;7(1):10115. doi: 10.1038/s41598-017-10186-4.


Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.

Venkateswaran K, Checinska Sielaff A, Ratnayake S, Pope RK, Blank TE, Stepanov VG, Fox GE, van Tongeren SP, Torres C, Allen J, Jaing C, Pierson D, Perry J, Koren S, Phillippy A, Klubnik J, Treangen TJ, Rosovitz MJ, Bergman NH.

Genome Announc. 2017 Aug 10;5(32). pii: e00680-17. doi: 10.1128/genomeA.00680-17.


Whole metagenome profiles of particulates collected from the International Space Station.

Be NA, Avila-Herrera A, Allen JE, Singh N, Checinska Sielaff A, Jaing C, Venkateswaran K.

Microbiome. 2017 Jul 17;5(1):81. doi: 10.1186/s40168-017-0292-4. Erratum in: Microbiome. 2017 Sep 1;5(1):111.


Optical, structural, and mechanical properties of silicon oxynitride films prepared by pulsed magnetron sputtering.

Tang CJ, Jaing CC, Tien CL, Sun WC, Lin SC.

Appl Opt. 2017 Feb 1;56(4):C168-C174. doi: 10.1364/AO.56.00C168.


Varying stress of SiO<sub>x</sub>C<sub>y</sub> thin films deposited by plasma polymerization.

Liao WB, Chang YC, Jaing CC, Cheng CL, Lee CC, Wei HS, Kuo CC.

Appl Opt. 2017 Feb 1;56(4):C140-C144. doi: 10.1364/AO.56.00C140.


Draft Genome Sequences of Biosafety Level 2 Opportunistic Pathogens Isolated from the Environmental Surfaces of the International Space Station.

Checinska Sielaff A, Singh NK, Allen JE, Thissen J, Jaing C, Venkateswaran K.

Genome Announc. 2016 Dec 29;4(6). pii: e01263-16. doi: 10.1128/genomeA.01263-16.


Reply to: Comment on 'Molecular evidence of viral DNA in non-small cell lung cancer and non-neoplastic lung'.

Robinson LA, Jaing CJ, Campbell CP, Magliocco A, Xiong Y, Magliocco G, Thissen JB, Antonia S.

Br J Cancer. 2017 Jan;116(3):e6. doi: 10.1038/bjc.2016.339. Epub 2016 Oct 20. No abstract available.


Differential expression of viral agents in lymphoma tissues of patients with ABC diffuse large B-cell lymphoma from high and low endemic infectious disease regions.

Högfeldt T, Jaing C, Loughlin KM, Thissen J, Gardner S, Bahnassy AA, Gharizadeh B, Lundahl J, Österborg A, Porwit A, Zekri AN, Khaled HM, Mellstedt H, Moshfegh A.

Oncol Lett. 2016 Oct;12(4):2782-2788. Epub 2016 Aug 16.


Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing.

Jaing CJ, McLoughlin KS, Thissen JB, Zemla A, Gardner SN, Vergez LM, Bourguet F, Mabery S, Fofanov VY, Koshinsky H, Jackson PJ.

PLoS One. 2016 Sep 26;11(9):e0163458. doi: 10.1371/journal.pone.0163458. eCollection 2016.


AOAC SMPR(®) 2016.006.

Hadfield TL, Jackson PJ, Appler J, Baillie L, Bailor E, Ballin J, Beck L, Blanke SR, Cahall R, Damer K, Dragon D, Forsman M, Jaing C, Johns M, Lin N, Maple L, Morse SA, New D, Retford M, Shah S, Sozhamannan S, Trudil D, Welkos S, Coates SG.

J AOAC Int. 2016 Jul;99(4):1084-1089. doi: 10.5740/jaoacint.SMPR2016.006. No abstract available.


Molecular evidence of viral DNA in non-small cell lung cancer and non-neoplastic lung.

Robinson LA, Jaing CJ, Pierce Campbell C, Magliocco A, Xiong Y, Magliocco G, Thissen JB, Antonia S.

Br J Cancer. 2016 Aug 9;115(4):497-504. doi: 10.1038/bjc.2016.213. Epub 2016 Jul 14.


Microbiome associations in pigs with the best and worst clinical outcomes following co-infection with porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circovirus type 2 (PCV2).

Niederwerder MC, Jaing CJ, Thissen JB, Cino-Ozuna AG, McLoughlin KS, Rowland RR.

Vet Microbiol. 2016 May 30;188:1-11. doi: 10.1016/j.vetmic.2016.03.008. Epub 2016 Mar 11.


Characterization of Genetic Variability of Venezuelan Equine Encephalitis Viruses.

Gardner SN, McLoughlin K, Be NA, Allen J, Weaver SC, Forrester N, Guerbois M, Jaing C.

PLoS One. 2016 Apr 7;11(4):e0152604. doi: 10.1371/journal.pone.0152604. eCollection 2016.


Pathogen surveillance in wild bottlenose dolphins Tursiops truncatus.

Jaing C, Thissen JB, Gardner S, McLoughlin K, Slezak T, Bossart GD, Fair PA.

Dis Aquat Organ. 2015 Oct 16;116(2):83-91. doi: 10.3354/dao02917.


Optical properties and residual stress in Nb-Si composite films prepared by magnetron cosputtering.

Tang CJ, Porter GA, Jaing CC, Tsai FM.

Appl Opt. 2015 Feb 1;54(4):959-65. doi: 10.1364/AO.54.000959.


Application of a pathogen microarray for the analysis of viruses and bacteria in clinical diagnostic samples from pigs.

Jaing CJ, Thissen JB, Gardner SN, McLoughlin KS, Hullinger PJ, Monday NA, Niederwerder MC, Rowland RR.

J Vet Diagn Invest. 2015 May;27(3):313-25. doi: 10.1177/1040638715578484. Epub 2015 Apr 8.


Detection of Epstein-Barr virus (EBV) in human lymphoma tissue by a novel microbial detection array.

Tellez J, Jaing C, Wang J, Green R, Chen M.

Biomark Res. 2014 Dec 5;2(1):24. doi: 10.1186/s40364-014-0024-x. eCollection 2014.


Process dependence of morphology and microstructure of cyanine dye J-aggregate film: correlation with absorption, photo- and electroluminescence properties.

Chang JF, Chien FC, Cheng CW, Lin CC, Lu YH, Wei HS, Jaing CC, Lee CC.

Opt Express. 2014 Dec 1;22(24):29388-97. doi: 10.1364/OE.22.029388.


Modeling an approach to define sensitivity of viral detection in sample matrices-examples with microarray readout.

Feng SF, Jaing C, Thissen JB, Wang C, Duncan P.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):589-94. doi: 10.5731/pdajpst.2014.01011.


Metagenomic analysis of the airborne environment in urban spaces.

Be NA, Thissen JB, Fofanov VY, Allen JE, Rojas M, Golovko G, Fofanov Y, Koshinsky H, Jaing CJ.

Microb Ecol. 2015 Feb;69(2):346-55. doi: 10.1007/s00248-014-0517-z. Epub 2014 Oct 29.


Multiplex degenerate primer design for targeted whole genome amplification of many viral genomes.

Gardner SN, Jaing CJ, Elsheikh MM, Peña J, Hysom DA, Borucki MK.

Adv Bioinformatics. 2014;2014:101894. doi: 10.1155/2014/101894. Epub 2014 Aug 3.


Current strategic thinking for the development of a trivalent alphavirus vaccine for human use.

Wolfe DN, Heppner DG, Gardner SN, Jaing C, Dupuy LC, Schmaljohn CS, Carlton K.

Am J Trop Med Hyg. 2014 Sep;91(3):442-50. doi: 10.4269/ajtmh.14-0055. Epub 2014 May 19.


Microbial profiling of combat wound infection through detection microarray and next-generation sequencing.

Be NA, Allen JE, Brown TS, Gardner SN, McLoughlin KS, Forsberg JA, Kirkup BC, Chromy BA, Luciw PA, Elster EA, Jaing CJ.

J Clin Microbiol. 2014 Jul;52(7):2583-94. doi: 10.1128/JCM.00556-14. Epub 2014 May 14.


Screening of viral pathogens from pediatric ileal tissue samples after vaccination.

Hewitson L, Thissen JB, Gardner SN, McLoughlin KS, Glausser MK, Jaing CJ.

Adv Virol. 2014;2014:720585. doi: 10.1155/2014/720585. Epub 2014 Mar 23.


Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array.

Devault AM, McLoughlin K, Jaing C, Gardner S, Porter TM, Enk JM, Thissen J, Allen J, Borucki M, DeWitte SN, Dhody AN, Poinar HN.

Sci Rep. 2014 Mar 6;4:4245. doi: 10.1038/srep04245.


Analysis of sensitivity and rapid hybridization of a multiplexed Microbial Detection Microarray.

Thissen JB, McLoughlin K, Gardner S, Gu P, Mabery S, Slezak T, Jaing C.

J Virol Methods. 2014 Jun;201:73-8. doi: 10.1016/j.jviromet.2014.01.024. Epub 2014 Mar 3.


Optical constants of electrochromic films and contrast ratio of reflective electrochromic devices.

Jaing CC, Tang CJ, Chan CC, Lee KH, Kuo CC, Chen HC, Lee CC.

Appl Opt. 2014 Feb 1;53(4):A154-8. doi: 10.1364/AO.53.00A154.


Wound outcome in combat injuries is associated with a unique set of protein biomarkers.

Chromy BA, Eldridge A, Forsberg JA, Brown TS, Kirkup BC, Jaing C, Be NA, Elster E, Luciw PA.

J Transl Med. 2013 Nov 6;11:281. doi: 10.1186/1479-5876-11-281.


Adjustable exciton-photon coupling with giant Rabi-splitting using layer-by-layer J-aggregate thin films in all-metal mirror microcavities.

Wei HS, Jaing CC, Chen YT, Lin CC, Cheng CW, Chan CH, Lee CC, Chang JF.

Opt Express. 2013 Sep 9;21(18):21365-73. doi: 10.1364/OE.21.021365.


Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing.

Be NA, Thissen JB, Gardner SN, McLoughlin KS, Fofanov VY, Koshinsky H, Ellingson SR, Brettin TS, Jackson PJ, Jaing CJ.

PLoS One. 2013 Sep 9;8(9):e73455. doi: 10.1371/journal.pone.0073455. eCollection 2013.


Association of Kaposi’s sarcoma-associated herpesvirus (KSHV) with bladder cancer in Croatian patients.

Paradžik M, Bučević-Popović V, Šitum M, Jaing CJ, Degoricija M, McLoughlin KS, Ismail SI, Punda-Polić V, Terzić J.

Tumour Biol. 2014 Jan;35(1):567-72.


Optimizing SNP microarray probe design for high accuracy microbial genotyping.

Gardner SN, Thissen JB, McLoughlin KS, Slezak T, Jaing CJ.

J Microbiol Methods. 2013 Sep;94(3):303-10. doi: 10.1016/j.mimet.2013.07.006. Epub 2013 Jul 17.


Bioinformatics for microbial genotyping of equine encephalitis viruses, orthopoxviruses, and hantaviruses.

Gardner SN, Jaing CJ.

J Virol Methods. 2013 Oct;193(1):112-20. doi: 10.1016/j.jviromet.2013.04.019. Epub 2013 May 25.


An attenuated Lassa vaccine in SIV-infected rhesus macaques does not persist or cause arenavirus disease but does elicit Lassa virus-specific immunity.

Zapata JC, Poonia B, Bryant J, Davis H, Ateh E, George L, Crasta O, Zhang Y, Slezak T, Jaing C, Pauza CD, Goicochea M, Moshkoff D, Lukashevich IS, Salvato MS.

Virol J. 2013 Feb 12;10:52. doi: 10.1186/1743-422X-10-52.


Detection of adventitious viruses from biologicals using a broad-spectrum microbial detection array.

Jaing C, Gardner S, McLoughlin K, Thissen JB, Slezak T.

PDA J Pharm Sci Technol. 2011 Nov-Dec;65(6):668-74. doi: 10.5731/pdajpst.2011.00838.


The microbial detection array combined with random Phi29-amplification used as a diagnostic tool for virus detection in clinical samples.

Erlandsson L, Rosenstierne MW, McLoughlin K, Jaing C, Fomsgaard A.

PLoS One. 2011;6(8):e22631. doi: 10.1371/journal.pone.0022631. Epub 2011 Aug 10.


Optical properties and residual stress in aluminum nitride films prepared by alternating-current dual reactive magnetron sputtering.

Tang CJ, Jaing CC, Lee KH, Lee CC.

Appl Opt. 2011 May 1;50(13):1945-50. doi: 10.1364/AO.50.001945.


Effect of thermal annealing on the optical properties and residual stress of graded-index-like films deposited by radio-frequency ion-beam sputtering.

Tang CJ, Jaing CC, Lee KH, Lee CC.

Appl Opt. 2011 Mar 20;50(9):C62-8. doi: 10.1364/AO.50.000C62.


Thermal expansion coefficients of obliquely deposited MgF2 thin films and their intrinsic stress.

Jaing CC.

Appl Opt. 2011 Mar 20;50(9):C159-63. doi: 10.1364/AO.50.00C159.


A microbial detection array (MDA) for viral and bacterial detection.

Gardner SN, Jaing CJ, McLoughlin KS, Slezak TR.

BMC Genomics. 2010 Nov 25;11:668. doi: 10.1186/1471-2164-11-668.


Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus.

Victoria JG, Wang C, Jones MS, Jaing C, McLoughlin K, Gardner S, Delwart EL.

J Virol. 2010 Jun;84(12):6033-40. doi: 10.1128/JVI.02690-09. Epub 2010 Apr 7.


A functional gene array for detection of bacterial virulence elements.

Jaing C, Gardner S, McLoughlin K, Mulakken N, Alegria-Hartman M, Banda P, Williams P, Gu P, Wagner M, Manohar C, Slezak T.

PLoS One. 2008 May 14;3(5):e2163. doi: 10.1371/journal.pone.0002163.

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