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Items: 23

1.

Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil.

Blau K, Jacquiod S, Sørensen SJ, Su JQ, Zhu YG, Smalla K, Jechalke S.

Front Microbiol. 2019 Apr 16;10:725. doi: 10.3389/fmicb.2019.00725. eCollection 2019.

2.

Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce.

Paul Chowdhury S, Babin D, Sandmann M, Jacquiod S, Sommermann L, Sørensen SJ, Fliessbach A, Mäder P, Geistlinger J, Smalla K, Rothballer M, Grosch R.

Environ Microbiol. 2019 Jul;21(7):2426-2439. doi: 10.1111/1462-2920.14631. Epub 2019 Apr 29.

PMID:
30990945
3.

Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil.

Schostag M, Priemé A, Jacquiod S, Russel J, Ekelund F, Jacobsen CS.

ISME J. 2019 May;13(5):1345-1359. doi: 10.1038/s41396-019-0351-x. Epub 2019 Jan 28.

PMID:
30692629
4.

Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages.

Jacquiod S, Nunes I, Brejnrod A, Hansen MA, Holm PE, Johansen A, Brandt KK, Priemé A, Sørensen SJ.

Microbiome. 2018 Dec 13;6(1):223. doi: 10.1186/s40168-018-0606-1.

5.

Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome.

Wolters B, Fornefeld E, Jechalke S, Su JQ, Zhu YG, Sørensen SJ, Smalla K, Jacquiod S.

FEMS Microbiol Ecol. 2019 Jan 1;95(1). doi: 10.1093/femsec/fiy193.

PMID:
30295723
6.

Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity.

Kang D, Herschend J, Al-Soud WA, Mortensen MS, Gonzalo M, Jacquiod S, Sørensen SJ.

Bioresour Technol. 2018 Dec;270:303-310. doi: 10.1016/j.biortech.2018.09.006. Epub 2018 Sep 4.

PMID:
30236907
7.

Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives.

Pinilla-Redondo R, Cyriaque V, Jacquiod S, Sørensen SJ, Riber L.

Plasmid. 2018 Sep;99:56-67. doi: 10.1016/j.plasmid.2018.08.002. Epub 2018 Aug 4. Review.

PMID:
30086339
8.

An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer.

Madsen JS, Hylling O, Jacquiod S, Pécastaings S, Hansen LH, Riber L, Vestergaard G, Sørensen SJ.

ISME J. 2018 Sep;12(9):2330-2334. doi: 10.1038/s41396-018-0183-0. Epub 2018 Jun 13.

PMID:
29899518
9.

Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities.

Meisner A, Jacquiod S, Snoek BL, Ten Hooven FC, van der Putten WH.

Front Microbiol. 2018 Mar 7;9:294. doi: 10.3389/fmicb.2018.00294. eCollection 2018.

10.

Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization.

Wolters B, Jacquiod S, Sørensen SJ, Widyasari-Mehta A, Bech TB, Kreuzig R, Smalla K.

FEMS Microbiol Ecol. 2018 Apr 1;94(4). doi: 10.1093/femsec/fiy027.

PMID:
29462310
11.

Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities.

Raghupathi PK, Zupančič J, Brejnrod AD, Jacquiod S, Houf K, Burmølle M, Gunde-Cimerman N, Sørensen SJ.

Appl Environ Microbiol. 2018 Feb 14;84(5). pii: e02755-17. doi: 10.1128/AEM.02755-17. Print 2018 Mar 1.

12.

Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome.

Jacquiod S, Cyriaque V, Riber L, Al-Soud WA, Gillan DC, Wattiez R, Sørensen SJ.

J Hazard Mater. 2018 Feb 15;344:299-307. doi: 10.1016/j.jhazmat.2017.09.046. Epub 2017 Sep 28.

PMID:
29055834
13.

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation.

Jurburg SD, Nunes I, Brejnrod A, Jacquiod S, Priemé A, Sørensen SJ, Van Elsas JD, Salles JF.

Front Microbiol. 2017 Sep 25;8:1832. doi: 10.3389/fmicb.2017.01832. eCollection 2017.

14.

Effects of Soil Pre-Treatment with Basamid® Granules, Brassica juncea, Raphanus sativus, and Tagetes patula on Bacterial and Fungal Communities at Two Apple Replant Disease Sites.

Yim B, Nitt H, Wrede A, Jacquiod S, Sørensen SJ, Winkelmann T, Smalla K.

Front Microbiol. 2017 Sep 1;8:1604. doi: 10.3389/fmicb.2017.01604. eCollection 2017.

15.

Soil DNA Extraction Procedure Influences Protist 18S rRNA Gene Community Profiling Outcome.

Santos SS, Nunes I, Nielsen TK, Jacquiod S, Hansen LH, Winding A.

Protist. 2017 Jul;168(3):283-293. doi: 10.1016/j.protis.2017.03.002. Epub 2017 Mar 14.

PMID:
28477515
16.

Microbiomes associated with infective stages of root-knot and lesion nematodes in soil.

Elhady A, Giné A, Topalovic O, Jacquiod S, Sørensen SJ, Sorribas FJ, Heuer H.

PLoS One. 2017 May 4;12(5):e0177145. doi: 10.1371/journal.pone.0177145. eCollection 2017.

17.

Deciphering conjugative plasmid permissiveness in wastewater microbiomes.

Jacquiod S, Brejnrod A, Morberg SM, Abu Al-Soud W, Sørensen SJ, Riber L.

Mol Ecol. 2017 Jul;26(13):3556-3571. doi: 10.1111/mec.14138. Epub 2017 May 6.

PMID:
28390108
18.

Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure.

Nunes I, Jacquiod S, Brejnrod A, Holm PE, Johansen A, Brandt KK, Priemé A, Sørensen SJ.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw175. doi: 10.1093/femsec/fiw175. Epub 2016 Aug 18.

PMID:
27543319
19.

Metagenomes provide valuable comparative information on soil microeukaryotes.

Jacquiod S, Stenbæk J, Santos SS, Winding A, Sørensen SJ, Priemé A.

Res Microbiol. 2016 Jun;167(5):436-50. doi: 10.1016/j.resmic.2016.03.003. Epub 2016 Mar 26.

PMID:
27020245
20.

Functional Metagenomics: Construction and High-Throughput Screening of Fosmid Libraries for Discovery of Novel Carbohydrate-Active Enzymes.

Ufarté L, Bozonnet S, Laville E, Cecchini DA, Pizzut-Serin S, Jacquiod S, Demanèche S, Simonet P, Franqueville L, Veronese GP.

Methods Mol Biol. 2016;1399:257-71. doi: 10.1007/978-1-4939-3369-3_15.

PMID:
26791508
21.

Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library.

Jacquiod S, Demanèche S, Franqueville L, Ausec L, Xu Z, Delmont TO, Dunon V, Cagnon C, Mandic-Mulec I, Vogel TM, Simonet P.

J Biotechnol. 2014 Nov 20;190:18-29. doi: 10.1016/j.jbiotec.2014.03.036. Epub 2014 Apr 8.

PMID:
24721211
22.

Bioinformatic approaches reveal metagenomic characterization of soil microbial community.

Xu Z, Hansen MA, Hansen LH, Jacquiod S, Sørensen SJ.

PLoS One. 2014 Apr 1;9(4):e93445. doi: 10.1371/journal.pone.0093445. eCollection 2014.

23.

Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach.

Jacquiod S, Franqueville L, Cécillon S, Vogel TM, Simonet P.

PLoS One. 2013 Nov 20;8(11):e79699. doi: 10.1371/journal.pone.0079699. eCollection 2013.

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