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Optical Properties of Corals Distort Variable Chlorophyll Fluorescence Measurements.

Wangpraseurt D, Lichtenberg M, Jacques SL, Larkum AWD, Kühl M.

Plant Physiol. 2019 Apr;179(4):1608-1619. doi: 10.1104/pp.18.01275. Epub 2019 Jan 28.


Hyperspectral imaging in automated digital dermoscopy screening for melanoma.

Hosking AM, Coakley BJ, Chang D, Talebi-Liasi F, Lish S, Lee SW, Zong AM, Moore I, Browning J, Jacques SL, Krueger JG, Kelly KM, Linden KG, Gareau DS.

Lasers Surg Med. 2019 Mar;51(3):214-222. doi: 10.1002/lsm.23055. Epub 2019 Jan 17.


Modeling Tumor Phenotypes In Vitro with Three-Dimensional Bioprinting.

Langer EM, Allen-Petersen BL, King SM, Kendsersky ND, Turnidge MA, Kuziel GM, Riggers R, Samatham R, Amery TS, Jacques SL, Sheppard BC, Korkola JE, Muschler JL, Thibault G, Chang YH, Gray JW, Presnell SC, Nguyen DG, Sears RC.

Cell Rep. 2019 Jan 15;26(3):608-623.e6. doi: 10.1016/j.celrep.2018.12.090.


Corrigendum: Potential role of the glycolytic oscillator in acute hypoxia in tumors (2015 <i>Phys. Med. Biol.</i> 60 9215).

Che Fru L, Adamson EB, Campos DD, Fain SB, Jacques SL, van der Kogel AJ, Nickel KP, Song C, Kimple RJ, Kissick MW.

Phys Med Biol. 2018 Jun 6. doi: 10.1088/1361-6560/aacaba. [Epub ahead of print]


Small molecule inhibitors and CRISPR/Cas9 mutagenesis demonstrate that SMYD2 and SMYD3 activity are dispensable for autonomous cancer cell proliferation.

Thomenius MJ, Totman J, Harvey D, Mitchell LH, Riera TV, Cosmopoulos K, Grassian AR, Klaus C, Foley M, Admirand EA, Jahic H, Majer C, Wigle T, Jacques SL, Gureasko J, Brach D, Lingaraj T, West K, Smith S, Rioux N, Waters NJ, Tang C, Raimondi A, Munchhof M, Mills JE, Ribich S, Porter Scott M, Kuntz KW, Janzen WP, Moyer M, Smith JJ, Chesworth R, Copeland RA, Boriack-Sjodin PA.

PLoS One. 2018 Jun 1;13(6):e0197372. doi: 10.1371/journal.pone.0197372. eCollection 2018.


Methodological problems in a study of fetal visual perception.

Scheel AM, Ritchie SJ, Brown NJL, Jacques SL.

Curr Biol. 2018 May 21;28(10):R594-R596. doi: 10.1016/j.cub.2018.03.047.


Optimal wavelength selection for optical spectroscopy of hemoglobin and water within a simulated light-scattering tissue.

Marois M, Jacques SL, Paulsen KD.

J Biomed Opt. 2018 Jan;23(7):1-5. doi: 10.1117/1.JBO.23.7.071202.


Identification of a CARM1 Inhibitor with Potent In Vitro and In Vivo Activity in Preclinical Models of Multiple Myeloma.

Drew AE, Moradei O, Jacques SL, Rioux N, Boriack-Sjodin AP, Allain C, Scott MP, Jin L, Raimondi A, Handler JL, Ott HM, Kruger RG, McCabe MT, Sneeringer C, Riera T, Shapiro G, Waters NJ, Mitchell LH, Duncan KW, Moyer MP, Copeland RA, Smith J, Chesworth R, Ribich SA.

Sci Rep. 2017 Dec 21;7(1):17993. doi: 10.1038/s41598-017-18446-z.


Noninvasive in vivo optical characterization of blood flow and oxygen consumption in the superficial plexus of skin.

Liasi FT, Samatham R, Jacques SL.

J Biomed Opt. 2017 Nov;22(11):1-6. doi: 10.1117/1.JBO.22.11.115002.


Modeling subdiffusive light scattering by incorporating the tissue phase function and detector numerical aperture.

Post AL, Jacques SL, Sterenborg HJCM, Faber DJ, van Leeuwen TG.

J Biomed Opt. 2017 May 1;22(5):50501. doi: 10.1117/1.JBO.22.5.050501. Erratum in: J Biomed Opt. 2019 Jun;24(6):1-2.


In vivo imaging of coral tissue and skeleton with optical coherence tomography.

Wangpraseurt D, Wentzel C, Jacques SL, Wagner M, Kühl M.

J R Soc Interface. 2017 Mar;14(128). pii: 20161003. doi: 10.1098/rsif.2016.1003.


Monte Carlo Modeling of Photon Propagation Reveals Highly Scattering Coral Tissue.

Wangpraseurt D, Jacques SL, Petrie T, Kühl M.

Front Plant Sci. 2016 Sep 21;7:1404. eCollection 2016.


The Black Bug Myth: Selective photodestruction of pigmented pathogens.

Harris DM, Jacques SL, Darveau R.

Lasers Surg Med. 2016 Sep;48(7):706-14. doi: 10.1002/lsm.22545. Epub 2016 Aug 1.


Minimal basilar membrane motion in low-frequency hearing.

Warren RL, Ramamoorthy S, Ciganović N, Zhang Y, Wilson TM, Petrie T, Wang RK, Jacques SL, Reichenbach T, Nuttall AL, Fridberger A.

Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):E4304-10. doi: 10.1073/pnas.1606317113. Epub 2016 Jul 12.


Polarized light imaging specifies the anisotropy of light scattering in the superficial layer of a tissue.

Jacques SL, Roussel S, Samatham R.

J Biomed Opt. 2016 Jul 1;21(7):71115. doi: 10.1117/1.JBO.21.7.071115.


Novel Oxindole Sulfonamides and Sulfamides: EPZ031686, the First Orally Bioavailable Small Molecule SMYD3 Inhibitor.

Mitchell LH, Boriack-Sjodin PA, Smith S, Thomenius M, Rioux N, Munchhof M, Mills JE, Klaus C, Totman J, Riera TV, Raimondi A, Jacques SL, West K, Foley M, Waters NJ, Kuntz KW, Wigle TJ, Scott MP, Copeland RA, Smith JJ, Chesworth R.

ACS Med Chem Lett. 2015 Aug 27;7(2):134-8. doi: 10.1021/acsmedchemlett.5b00272. eCollection 2016 Feb 11.


CARM1 Preferentially Methylates H3R17 over H3R26 through a Random Kinetic Mechanism.

Jacques SL, Aquino KP, Gureasko J, Boriack-Sjodin PA, Porter Scott M, Copeland RA, Riera TV.

Biochemistry. 2016 Mar 22;55(11):1635-44. doi: 10.1021/acs.biochem.5b01071. Epub 2016 Feb 5.


Minimally invasive surgical method to detect sound processing in the cochlear apex by optical coherence tomography.

Ramamoorthy S, Zhang Y, Petrie T, Fridberger A, Ren T, Wang R, Jacques SL, Nuttall AL.

J Biomed Opt. 2016 Feb;21(2):25003. doi: 10.1117/1.JBO.21.2.025003.


OptogenSIM: a 3D Monte Carlo simulation platform for light delivery design in optogenetics.

Liu Y, Jacques SL, Azimipour M, Rogers JD, Pashaie R, Eliceiri KW.

Biomed Opt Express. 2015 Nov 16;6(12):4859-70. doi: 10.1364/BOE.6.004859. eCollection 2015 Dec 1.


Methods of Melanoma Detection.

Leachman SA, Cassidy PB, Chen SC, Curiel C, Geller A, Gareau D, Pellacani G, Grichnik JM, Malvehy J, North J, Jacques SL, Petrie T, Puig S, Swetter SM, Tofte S, Weinstock MA.

Cancer Treat Res. 2016;167:51-105. doi: 10.1007/978-3-319-22539-5_3. Review.


Potential role of the glycolytic oscillator in acute hypoxia in tumors.

Fru LC, Adamson EB, Campos DD, Fain SB, Jacques SL, van der Kogel AJ, Nickel KP, Song C, Kimple RJ, Kissick MW.

Phys Med Biol. 2015 Dec 21;60(24):9215-25. doi: 10.1088/0031-9155/60/24/9215. Epub 2015 Nov 18.


Structural Insights into Ternary Complex Formation of Human CARM1 with Various Substrates.

Boriack-Sjodin PA, Jin L, Jacques SL, Drew A, Sneeringer C, Scott MP, Moyer MP, Ribich S, Moradei O, Copeland RA.

ACS Chem Biol. 2016 Mar 18;11(3):763-71. doi: 10.1021/acschembio.5b00773. Epub 2015 Nov 23.


Aryl Pyrazoles as Potent Inhibitors of Arginine Methyltransferases: Identification of the First PRMT6 Tool Compound.

Mitchell LH, Drew AE, Ribich SA, Rioux N, Swinger KK, Jacques SL, Lingaraj T, Boriack-Sjodin PA, Waters NJ, Wigle TJ, Moradei O, Jin L, Riera T, Porter-Scott M, Moyer MP, Smith JJ, Chesworth R, Copeland RA.

ACS Med Chem Lett. 2015 Apr 6;6(6):655-9. doi: 10.1021/acsmedchemlett.5b00071. eCollection 2015 Jun 11.


Real-time treatment light dose guidance of Pleural PDT: an update.

Zhu TC, Kim MM, Jacques SL, Penjweini R, Dimofte A, Finlay JC, Simone CB 2nd, Cengel KA, Friedberg J.

Proc SPIE Int Soc Opt Eng. 2015 Mar 2;9308. pii: 930809.


A selective inhibitor of PRMT5 with in vivo and in vitro potency in MCL models.

Chan-Penebre E, Kuplast KG, Majer CR, Boriack-Sjodin PA, Wigle TJ, Johnston LD, Rioux N, Munchhof MJ, Jin L, Jacques SL, West KA, Lingaraj T, Stickland K, Ribich SA, Raimondi A, Scott MP, Waters NJ, Pollock RM, Smith JJ, Barbash O, Pappalardi M, Ho TF, Nurse K, Oza KP, Gallagher KT, Kruger R, Moyer MP, Copeland RA, Chesworth R, Duncan KW.

Nat Chem Biol. 2015 Jun;11(6):432-7. doi: 10.1038/nchembio.1810. Epub 2015 Apr 27.


Circular polarization memory in polydisperse scattering media.

Macdonald CM, Jacques SL, Meglinski IV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Mar;91(3):033204. Epub 2015 Mar 16.


Quick analysis of optical spectra to quantify epidermal melanin and papillary dermal blood content of skin.

Jacques SL.

J Biophotonics. 2015 Apr;8(4):309-16. doi: 10.1002/jbio.201400103. Epub 2014 Dec 9.


Coupling 3D Monte Carlo light transport in optically heterogeneous tissues to photoacoustic signal generation.

Jacques SL.

Photoacoustics. 2014 Sep 10;2(4):137-42. doi: 10.1016/j.pacs.2014.09.001. eCollection 2014 Dec.


Extraction of optical properties and prediction of light distribution in rat brain tissue.

Azimipour M, Baumgartner R, Liu Y, Jacques SL, Eliceiri K, Pashaie R.

J Biomed Opt. 2014;19(7):75001. doi: 10.1117/1.JBO.19.7.075001.


Filtering of acoustic signals within the hearing organ.

Ramamoorthy S, Zha D, Chen F, Jacques SL, Wang R, Choudhury N, Nuttall AL, Fridberger A.

J Neurosci. 2014 Jul 2;34(27):9051-8. doi: 10.1523/JNEUROSCI.0722-14.2014.


Optical properties of biological tissues: a review.

Jacques SL.

Phys Med Biol. 2013 Jun 7;58(11):R37-61. doi: 10.1088/0031-9155/58/11/R37. Epub 2013 May 10. Review. Erratum in: Phys Med Biol. 2013 Jul 21;58(14):5007-8.


Depth-resolved dual-beamlet vibrometry based on Fourier domain low coherence interferometry.

Subhash HM, Choudhury N, Chen F, Wang RK, Jacques SL, Nuttall AL.

J Biomed Opt. 2013 Mar;18(3):036003. doi: 10.1117/1.JBO.18.3.036003.


Goniometric measurements of thick tissue using Monte Carlo simulations to obtain the single scattering anisotropy coefficient.

Hall G, Jacques SL, Eliceiri KW, Campagnola PJ.

Biomed Opt Express. 2012 Nov 1;3(11):2707-19. doi: 10.1364/BOE.3.002707. Epub 2012 Oct 2.


Measurement of single cell refractive index, dry mass, volume, and density using a transillumination microscope.

Phillips KG, Jacques SL, McCarty OJ.

Phys Rev Lett. 2012 Sep 14;109(11):118105. Epub 2012 Sep 13.


Reflectance confocal microscopy of optical phantoms.

Jacques SL, Wang B, Samatham R.

Biomed Opt Express. 2012 Jun 1;3(6):1162-72. doi: 10.1364/BOE.3.001162. Epub 2012 May 1.


Enhanced optical clearing of skin in vivo and optical coherence tomography in-depth imaging.

Wen X, Jacques SL, Tuchin VV, Zhu D.

J Biomed Opt. 2012 Jun;17(6):066022. doi: 10.1117/1.JBO.17.6.066022.


Feasibility of spectral-domain phase-sensitive optical coherence tomography for middle ear vibrometry.

Subhash HM, Nguyen-Huynh A, Wang RK, Jacques SL, Choudhury N, Nuttall AL.

J Biomed Opt. 2012 Jun;17(6):060505. doi: 10.1117/1.JBO.17.6.060505.


In vivo outer hair cell length changes expose the active process in the cochlea.

Zha D, Chen F, Ramamoorthy S, Fridberger A, Choudhury N, Jacques SL, Wang RK, Nuttall AL.

PLoS One. 2012;7(4):e32757. doi: 10.1371/journal.pone.0032757. Epub 2012 Apr 9.


Parametric imaging of the local attenuation coefficient in human axillary lymph nodes assessed using optical coherence tomography.

Scolaro L, McLaughlin RA, Klyen BR, Wood BA, Robbins PD, Saunders CM, Jacques SL, Sampson DD.

Biomed Opt Express. 2012 Feb 1;3(2):366-79. doi: 10.1364/BOE.3.000366. Epub 2012 Jan 27.


A differentially amplified motion in the ear for near-threshold sound detection.

Chen F, Zha D, Fridberger A, Zheng J, Choudhury N, Jacques SL, Wang RK, Shi X, Nuttall AL.

Nat Neurosci. 2011 Jun;14(6):770-4. doi: 10.1038/nn.2827. Epub 2011 May 22.


Dermal reflectivity determined by optical coherence tomography is an indicator of epidermal hyperplasia and dermal edema within inflamed skin.

Phillips KG, Wang Y, Levitz D, Choudhury N, Swanzey E, Lagowski J, Kulesz-Martin M, Jacques SL.

J Biomed Opt. 2011 Apr;16(4):040503. doi: 10.1117/1.3567082.


Rapid spectral analysis for spectral imaging.

Jacques SL, Samatham R, Choudhury N.

Biomed Opt Express. 2010 Jul 15;1(1):157-164.


Decreased conduit perfusion measured by spectroscopy is associated with anastomotic complications.

Pham TH, Perry KA, Enestvedt CK, Gareau D, Dolan JP, Sheppard BC, Jacques SL, Hunter JG.

Ann Thorac Surg. 2011 Feb;91(2):380-5. doi: 10.1016/j.athoracsur.2010.10.006.


Automated detection of malignant features in confocal microscopy on superficial spreading melanoma versus nevi.

Gareau D, Hennessy R, Wan E, Pellacani G, Jacques SL.

J Biomed Opt. 2010 Nov-Dec;15(6):061713. doi: 10.1117/1.3524301.


Optical fiber probe spectroscopy for laparoscopic monitoring of tissue oxygenation during esophagectomies.

Gareau DS, Truffer F, Perry KA, Pham TH, Enestvedt CK, Dolan JP, Hunter JG, Jacques SL.

J Biomed Opt. 2010 Nov-Dec;15(6):061712. doi: 10.1117/1.3512149. Erratum in: J Biomed Opt. 2011 Mar;16(3):039801. Perry, Kyle [corrected to Perry, Kyle A]; Pham, Thai [corrected to Pham, Thai H]; Dolan, James [corrected to Dolan, James P].


IL-23-mediated psoriasis-like epidermal hyperplasia is dependent on IL-17A.

Rizzo HL, Kagami S, Phillips KG, Kurtz SE, Jacques SL, Blauvelt A.

J Immunol. 2011 Feb 1;186(3):1495-502. doi: 10.4049/jimmunol.1001001. Epub 2010 Dec 20.


How tissue optics affect dosimetry of photodynamic therapy.

Jacques SL.

J Biomed Opt. 2010 Sep-Oct;15(5):051608. doi: 10.1117/1.3494561.


Pharmacology, biodistribution, and efficacy of GPCR-based pepducins in disease models.

Tressel SL, Koukos G, Tchernychev B, Jacques SL, Covic L, Kuliopulos A.

Methods Mol Biol. 2011;683:259-75. doi: 10.1007/978-1-60761-919-2_19. Review.


Parametric imaging of cancer with optical coherence tomography.

McLaughlin RA, Scolaro L, Robbins P, Saunders C, Jacques SL, Sampson DD.

J Biomed Opt. 2010 Jul-Aug;15(4):046029. doi: 10.1117/1.3479931.

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