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Comparative Genomics and Phylogenetic Analyses Suggest Several Novel Species within Clavibacter sp. Including Non-Pathogenic Tomato-Associated Strains.

Osdaghi E, Rahimi T, Taghavi SM, Ansari M, Zarei S, Portier P, Briand M, Jacques MA.

Appl Environ Microbiol. 2020 Jan 10. pii: AEM.02873-19. doi: 10.1128/AEM.02873-19. [Epub ahead of print]


Zucchini vein clearing disease is caused by several lineages within Pseudomonas syringae species complex.

Lacault C, Briand M, Jacques MA, Darrasse A.

Phytopathology. 2020 Jan 7. doi: 10.1094/PHYTO-07-19-0266-R. [Epub ahead of print]


Comparative genomics to develop a specific multiplex PCR assay for detection of Clavibacter michiganensis.

Thapa SP, O'Leary M, Jacques MA, Gilbertson R, Coaker G.

Phytopathology. 2019 Dec 4. doi: 10.1094/PHYTO-10-19-0405-R. [Epub ahead of print]


Temporal perturbation of ERK dynamics reveals network architecture of FGF2/MAPK signaling.

Blum Y, Mikelson J, Dobrzyński M, Ryu H, Jacques MA, Jeon NL, Khammash M, Pertz O.

Mol Syst Biol. 2019 Nov;15(11):e8947. doi: 10.15252/msb.20198947.


Assessment and management of minor burns in children.

Tran S, Jacques MA, Holland AJ.

Aust J Gen Pract. 2019 Sep;48(9):590-594. doi: 10.31128/AJGP-04-19-4919.


Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen.

Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA.

Front Plant Sci. 2019 Apr 18;10:489. doi: 10.3389/fpls.2019.00489. eCollection 2019.


Identification of genetic relationships and subspecies signatures in Xylella fastidiosa.

Denancé N, Briand M, Gaborieau R, Gaillard S, Jacques MA.

BMC Genomics. 2019 Mar 25;20(1):239. doi: 10.1186/s12864-019-5565-9.


Draft Genome Sequences of the Type Strains of Three Clavibacter Subspecies and Atypical Peach-Colored Strains Isolated from Tomato.

Osdaghi E, Portier P, Briand M, Taghouti G, Jacques MA.

Microbiol Resour Announc. 2018 Nov 8;7(18). pii: e01357-18. doi: 10.1128/MRA.01357-18. eCollection 2018 Nov.


Reclassification of Xanthomonas gardneri (ex Šutič 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trébaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses.

Timilsina S, Kara S, Jacques MA, Potnis N, Minsavage GV, Vallad GE, Jones JB, Fischer-Le Saux M.

Int J Syst Evol Microbiol. 2019 Feb;69(2):343-349. doi: 10.1099/ijsem.0.003104. Epub 2018 Nov 20.


Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean.

Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R, Jacques MA.

BMC Genomics. 2018 Aug 13;19(1):606. doi: 10.1186/s12864-018-4975-4.


Role of the acquisition of a type 3 secretion system in the emergence of novel pathogenic strains of Xanthomonas.

Meline V, Delage W, Brin C, Li-Marchetti C, Sochard D, Arlat M, Rousseau C, Darrasse A, Briand M, Lebreton G, Portier P, Fischer-Le Saux M, Durand K, Jacques MA, Belin E, Boureau T.

Mol Plant Pathol. 2019 Jan;20(1):33-50. doi: 10.1111/mpp.12737. Epub 2018 Oct 26.


Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence.

Torres-Cortés G, Bonneau S, Bouchez O, Genthon C, Briand M, Jacques MA, Barret M.

Front Plant Sci. 2018 Jun 29;9:902. doi: 10.3389/fpls.2018.00902. eCollection 2018.


High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero.

Osdaghi E, Forero Serna N, Bolot S, Fischer-Le Saux M, Jacques MA, Portier P, Carrère S, Koebnik R.

Genome Announc. 2017 Nov 30;5(48). pii: e01378-17. doi: 10.1128/genomeA.01378-17.



Hjälmdahl M, Cunto F, Jacques MAP.

Accid Anal Prev. 2018 May;114:1-3. doi: 10.1016/j.aap.2017.10.024. Epub 2017 Nov 3. No abstract available.


First Complete Genome Sequences of Xanthomonas citri pv. vignicola Strains CFBP7111, CFBP7112, and CFBP7113 Obtained Using Long-Read Technology.

Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG.

Genome Announc. 2017 Sep 7;5(36). pii: e00813-17. doi: 10.1128/genomeA.00813-17.


Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens.

Merda D, Briand M, Bosis E, Rousseau C, Portier P, Barret M, Jacques MA, Fischer-Le Saux M.

Mol Ecol. 2017 Nov;26(21):5939-5952. doi: 10.1111/mec.14343. Epub 2017 Sep 29.


Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors.

Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG.

BMC Genomics. 2017 Aug 30;18(1):670. doi: 10.1186/s12864-017-4087-6.


Genomic Analysis of Clavibacter michiganensis Reveals Insight Into Virulence Strategies and Genetic Diversity of a Gram-Positive Bacterial Pathogen.

Thapa SP, Pattathil S, Hahn MG, Jacques MA, Gilbertson RL, Coaker G.

Mol Plant Microbe Interact. 2017 Oct;30(10):786-802. doi: 10.1094/MPMI-06-17-0146-R. Epub 2017 Aug 18.


Ecological patterns of seed microbiome diversity, transmission, and assembly.

Shade A, Jacques MA, Barret M.

Curr Opin Microbiol. 2017 Jun;37:15-22. doi: 10.1016/j.mib.2017.03.010. Epub 2017 Apr 21. Review.


High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants.

Robène I, Bolot S, Pruvost O, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R, Gagnevin L.

Genome Announc. 2016 Sep 1;4(5). pii: e00902-16. doi: 10.1128/genomeA.00902-16.


Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas.

Jacques MA, Arlat M, Boulanger A, Boureau T, Carrère S, Cesbron S, Chen NW, Cociancich S, Darrasse A, Denancé N, Fischer-Le Saux M, Gagnevin L, Koebnik R, Lauber E, Noël LD, Pieretti I, Portier P, Pruvost O, Rieux A, Robène I, Royer M, Szurek B, Verdier V, Vernière C.

Annu Rev Phytopathol. 2016 Aug 4;54:163-87. doi: 10.1146/annurev-phyto-080615-100147. Epub 2016 Jan 1. Review.


Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France.

Cunty A, Cesbron S, Briand M, Carrère S, Poliakoff F, Jacques MA, Manceau C.

Braz J Microbiol. 2016 Jul-Sep;47(3):529-30. doi: 10.1016/j.bjm.2016.04.023. Epub 2016 Apr 22.


Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms.

Rezki S, Campion C, Iacomi-Vasilescu B, Preveaux A, Toualbia Y, Bonneau S, Briand M, Laurent E, Hunault G, Simoneau P, Jacques MA, Barret M.

PeerJ. 2016 Apr 11;4:e1923. doi: 10.7717/peerj.1923. eCollection 2016.


Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems.

Merda D, Bonneau S, Guimbaud JF, Durand K, Brin C, Boureau T, Lemaire C, Jacques MA, Fischer-Le Saux M.

Environ Microbiol Rep. 2016 Oct;8(5):572-581. doi: 10.1111/1758-2229.12397. Epub 2016 May 26.


Genotypic diversity of Lactobacillus sanfranciscensis strains isolated from French organic sourdoughs.

Lhomme E, Onno B, Chuat V, Durand K, Orain S, Valence F, Dousset X, Jacques MA.

Int J Food Microbiol. 2016 Jun 2;226:13-9. doi: 10.1016/j.ijfoodmicro.2016.03.008. Epub 2016 Mar 15.


Plant microbiota affects seed transmission of phytopathogenic microorganisms.

Barret M, Guimbaud JF, Darrasse A, Jacques MA.

Mol Plant Pathol. 2016 Aug;17(6):791-5. doi: 10.1111/mpp.12382. No abstract available.


Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation.

Cesbron S, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques MA.

Front Plant Sci. 2015 Dec 22;6:1126. doi: 10.3389/fpls.2015.01126. eCollection 2015.


New Coffee Plant-Infecting Xylella fastidiosa Variants Derived via Homologous Recombination.

Jacques MA, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D.

Appl Environ Microbiol. 2015 Dec 28;82(5):1556-68. doi: 10.1128/AEM.03299-15.


Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD.

BMC Genomics. 2015 Nov 18;16:975. doi: 10.1186/s12864-015-2190-0.


Integration of geometric consistency contributory factors in three-leg junctions collision prediction models of Portuguese two-lane national highways.

da Costa JO, Jacques MA, Soares FE, Freitas EF.

Accid Anal Prev. 2016 Jan;86:59-67. doi: 10.1016/j.aap.2015.10.003. Epub 2015 Oct 26.


Draft Genome Sequence of Xanthomonas translucens pv. graminis Pathotype Strain CFBP 2053.

Pesce C, Bolot S, Berthelot E, Bragard C, Cunnac S, Fischer-Le Saux M, Portier P, Arlat M, Gagnevin L, Jacques MA, Noël LD, Carrère S, Koebnik R.

Genome Announc. 2015 Oct 8;3(5). pii: e01174-15. doi: 10.1128/genomeA.01174-15.


Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.

Bolot S, Cerutti A, Carrère S, Arlat M, Fischer-Le Saux M, Portier P, Poussier S, Jacques MA, Noël LD.

Genome Announc. 2015 Sep 17;3(5). pii: e01023-15. doi: 10.1128/genomeA.01023-15.


Origin of the Outbreak in France of Pseudomonas syringae pv. actinidiae Biovar 3, the Causal Agent of Bacterial Canker of Kiwifruit, Revealed by a Multilocus Variable-Number Tandem-Repeat Analysis.

Cunty A, Cesbron S, Poliakoff F, Jacques MA, Manceau C.

Appl Environ Microbiol. 2015 Oct;81(19):6773-89. doi: 10.1128/AEM.01688-15. Epub 2015 Jul 24.


Terroir is a key driver of seed-associated microbial assemblages.

Klaedtke S, Jacques MA, Raggi L, Préveaux A, Bonneau S, Negri V, Chable V, Barret M.

Environ Microbiol. 2016 Jun;18(6):1792-804. doi: 10.1111/1462-2920.12977. Epub 2015 Aug 11.


Phylogenetic and Variable-Number Tandem-Repeat Analyses Identify Nonpathogenic Xanthomonas arboricola Lineages Lacking the Canonical Type III Secretion System.

Essakhi S, Cesbron S, Fischer-Le Saux M, Bonneau S, Jacques MA, Manceau C.

Appl Environ Microbiol. 2015 Aug 15;81(16):5395-410. doi: 10.1128/AEM.00835-15. Epub 2015 Jun 5.


Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing.

Fischer-Le Saux M, Bonneau S, Essakhi S, Manceau C, Jacques MA.

Appl Environ Microbiol. 2015 Jul;81(14):4651-68. doi: 10.1128/AEM.00050-15. Epub 2015 May 1.


Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads.

Terrasson E, Darrasse A, Righetti K, Buitink J, Lalanne D, Ly Vu B, Pelletier S, Bolingue W, Jacques MA, Leprince O.

J Exp Bot. 2015 Jul;66(13):3737-52. doi: 10.1093/jxb/erv167. Epub 2015 Apr 28.


Phenoplant: a web resource for the exploration of large chlorophyll fluorescence image datasets.

Rousseau C, Hunault G, Gaillard S, Bourbeillon J, Montiel G, Simier P, Campion C, Jacques MA, Belin E, Boureau T.

Plant Methods. 2015 Apr 3;11:24. doi: 10.1186/s13007-015-0068-4. eCollection 2015.


High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

Pesce C, Bolot S, Cunnac S, Portier P, Fischer-Le Saux M, Jacques MA, Gagnevin L, Arlat M, Noël LD, Carrère S, Bragard C, Koebnik R.

Genome Announc. 2015 Feb 12;3(1). pii: e01574-14. doi: 10.1128/genomeA.01574-14.


Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884.

Indiana A, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Portier P, Darrasse A, Jacques MA.

Genome Announc. 2014 Sep 25;2(5). pii: e00966-14. doi: 10.1128/genomeA.00966-14.


Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

Gagnevin L, Bolot S, Gordon JL, Pruvost O, Vernière C, Robène I, Arlat M, Noël LD, Carrère S, Jacques MA, Koebnik R.

Genome Announc. 2014 Jul 31;2(4). pii: e00727-14. doi: 10.1128/genomeA.00727-14.


Safety performance models for urban intersections in Brazil.

Barbosa H, Cunto F, Bezerra B, Nodari C, Jacques MA.

Accid Anal Prev. 2014 Sep;70:258-66. doi: 10.1016/j.aap.2014.04.008. Epub 2014 May 14.


Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics.

Vayssier-Taussat M, Albina E, Citti C, Cosson JF, Jacques MA, Lebrun MH, Le Loir Y, Ogliastro M, Petit MA, Roumagnac P, Candresse T.

Front Cell Infect Microbiol. 2014 Mar 5;4:29. doi: 10.3389/fcimb.2014.00029. eCollection 2014. Review.


Development of multilocus variable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars.

Cesbron S, Pothier J, Gironde S, Jacques MA, Manceau C.

J Microbiol Methods. 2014 May;100:84-90. doi: 10.1016/j.mimet.2014.02.017. Epub 2014 Mar 12.


High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

Darrasse A, Bolot S, Serres-Giardi L, Charbit E, Boureau T, Fisher-Le Saux M, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Carrère S, Jacques MA.

Genome Announc. 2013 Dec 12;1(6). pii: e01036-13. doi: 10.1128/genomeA.01036-13.


High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

Jacques MA, Bolot S, Charbit E, Darrasse A, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Portier P, Carrère S, Boureau T.

Genome Announc. 2013 Dec 12;1(6). pii: e01035-13. doi: 10.1128/genomeA.01035-13.


Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero Á, Poulin L, Díaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robène-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A.

PLoS One. 2013 Nov 22;8(11):e79704. doi: 10.1371/journal.pone.0079704. eCollection 2013.


Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.

Darrasse A, Carrère S, Barbe V, Boureau T, Arrieta-Ortiz ML, Bonneau S, Briand M, Brin C, Cociancich S, Durand K, Fouteau S, Gagnevin L, Guérin F, Guy E, Indiana A, Koebnik R, Lauber E, Munoz A, Noël LD, Pieretti I, Poussier S, Pruvost O, Robène-Soustrade I, Rott P, Royer M, Serres-Giardi L, Szurek B, van Sluys MA, Verdier V, Vernière C, Arlat M, Manceau C, Jacques MA.

BMC Genomics. 2013 Nov 6;14:761. doi: 10.1186/1471-2164-14-761.


Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

Bolot S, Munoz Bodnar A, Cunnac S, Ortiz E, Szurek B, Noël LD, Arlat M, Jacques MA, Gagnevin L, Portier P, Fischer-Le Saux M, Carrere S, Koebnik R.

Genome Announc. 2013 Aug 29;1(4). pii: e00679-13. doi: 10.1128/genomeA.00679-13.


High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

Cunnac S, Bolot S, Forero Serna N, Ortiz E, Szurek B, Noël LD, Arlat M, Jacques MA, Gagnevin L, Carrere S, Nicole M, Koebnik R.

Genome Announc. 2013 Aug 29;1(4). pii: e00674-13. doi: 10.1128/genomeA.00674-13.

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