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Items: 1 to 50 of 89

1.

Biogeographical patterns in soil bacterial communities across the Arctic region.

Malard LA, Anwar MZ, Jacobsen CS, Pearce DA.

FEMS Microbiol Ecol. 2019 Aug 20. pii: fiz128. doi: 10.1093/femsec/fiz128. [Epub ahead of print]

PMID:
31429869
2.

To assemble or not to resemble-A validated Comparative Metatranscriptomics Workflow (CoMW).

Anwar MZ, Lanzen A, Bang-Andreasen T, Jacobsen CS.

Gigascience. 2019 Aug 1;8(8). pii: giz096. doi: 10.1093/gigascience/giz096.

3.

Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR.

Gobbi A, Santini RG, Filippi E, Ellegaard-Jensen L, Jacobsen CS, Hansen LH.

PLoS One. 2019 Apr 11;14(4):e0200979. doi: 10.1371/journal.pone.0200979. eCollection 2019.

4.

Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil.

Schostag M, Priemé A, Jacquiod S, Russel J, Ekelund F, Jacobsen CS.

ISME J. 2019 May;13(5):1345-1359. doi: 10.1038/s41396-019-0351-x. Epub 2019 Jan 28.

PMID:
30692629
5.

Editorial: Polar and Alpine Microbiology.

Stibal M, Jacobsen CS, Häggblom MM.

FEMS Microbiol Ecol. 2018 Sep 1;94(9). doi: 10.1093/femsec/fiy136. No abstract available.

PMID:
30010893
6.

Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples.

Jacobsen CS, Nielsen TK, Vester JK, Stougaard P, Nielsen JL, Voriskova J, Winding A, Baldrian P, Liu B, Frostegård Å, Pedersen D, Tveit AT, Svenning MM, Tebbe CC, Øvreås L, Jakobsen PB, Blazewicz SJ, Hubablek V, Bertilsson S, Hansen LH, Cary SC, Holben WE, Ekelund F, Bælum J.

Sci Rep. 2018 Apr 9;8(1):5711. doi: 10.1038/s41598-018-24082-y.

7.

Inhibition of anaerobic digestion processes: Applications of molecular tools.

Amha YM, Anwar MZ, Brower A, Jacobsen CS, Stadler LB, Webster TM, Smith AL.

Bioresour Technol. 2018 Jan;247:999-1014. doi: 10.1016/j.biortech.2017.08.210. Epub 2017 Sep 4. Review.

PMID:
28918349
8.

Wood Ash Induced pH Changes Strongly Affect Soil Bacterial Numbers and Community Composition.

Bang-Andreasen T, Nielsen JT, Voriskova J, Heise J, Rønn R, Kjøller R, Hansen HCB, Jacobsen CS.

Front Microbiol. 2017 Jul 28;8:1400. doi: 10.3389/fmicb.2017.01400. eCollection 2017.

9.

Erratum: Potential microbial contamination during sampling of permafrost soil assessed by tracers.

Bang-Andreasen T, Schostag M, Priemé A, Elberling B, Jacobsen CS.

Sci Rep. 2017 Apr 6;7:46006. doi: 10.1038/srep46006. No abstract available.

10.

Potential microbial contamination during sampling of permafrost soil assessed by tracers.

Bang-Andreasen T, Schostag M, Priemé A, Elberling B, Jacobsen CS.

Sci Rep. 2017 Feb 23;7:43338. doi: 10.1038/srep43338. Erratum in: Sci Rep. 2017 Apr 06;7:46006.

11.

Potential Activity of Subglacial Microbiota Transported to Anoxic River Delta Sediments.

Cameron KA, Stibal M, Olsen NS, Mikkelsen AB, Elberling B, Jacobsen CS.

Microb Ecol. 2017 Jul;74(1):6-9. doi: 10.1007/s00248-016-0926-2. Epub 2017 Jan 9.

12.

Conservative tracer bromide inhibits pesticide mineralisation in soil.

Bech TB, Rosenbom AE, Sørensen SR, Jacobsen CS.

Environ Pollut. 2017 Mar;222:404-411. doi: 10.1016/j.envpol.2016.12.016. Epub 2017 Jan 5.

13.

Continuous-variable quantum computing on encrypted data.

Marshall K, Jacobsen CS, Schäfermeier C, Gehring T, Weedbrook C, Andersen UL.

Nat Commun. 2016 Dec 14;7:13795. doi: 10.1038/ncomms13795.

14.

Nitrate addition has minimal short-term impacts on greenland ice sheet supraglacial prokaryotes.

Cameron KA, Stibal M, Chrismas N, Box J, Jacobsen CS.

Environ Microbiol Rep. 2017 Apr;9(2):144-150. doi: 10.1111/1758-2229.12510. Epub 2017 Mar 10.

PMID:
27943630
15.

Upstream Freshwater and Terrestrial Sources Are Differentially Reflected in the Bacterial Community Structure along a Small Arctic River and Its Estuary.

Hauptmann AL, Markussen TN, Stibal M, Olsen NS, Elberling B, Bælum J, Sicheritz-Pontén T, Jacobsen CS.

Front Microbiol. 2016 Sep 21;7:1474. eCollection 2016.

16.

Meltwater export of prokaryotic cells from the Greenland ice sheet.

Cameron KA, Stibal M, Hawkings JR, Mikkelsen AB, Telling J, Kohler TJ, Gözdereliler E, Zarsky JD, Wadham JL, Jacobsen CS.

Environ Microbiol. 2017 Feb;19(2):524-534. doi: 10.1111/1462-2920.13483. Epub 2016 Aug 30.

PMID:
27489963
17.

Identification of abiotic and biotic reductive dechlorination in a chlorinated ethene plume after thermal source remediation by means of isotopic and molecular biology tools.

Badin A, Broholm MM, Jacobsen CS, Palau J, Dennis P, Hunkeler D.

J Contam Hydrol. 2016 Sep;192:1-19. doi: 10.1016/j.jconhyd.2016.05.003. Epub 2016 May 26.

PMID:
27318432
18.

Supraglacial bacterial community structures vary across the Greenland ice sheet.

Cameron KA, Stibal M, Zarsky JD, Gözdereliler E, Schostag M, Jacobsen CS.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiv164. doi: 10.1093/femsec/fiv164. Epub 2015 Dec 20.

PMID:
26691594
19.

Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses.

Schostag M, Stibal M, Jacobsen CS, Bælum J, Taş N, Elberling B, Jansson JK, Semenchuk P, Priemé A.

Front Microbiol. 2015 Apr 30;6:399. doi: 10.3389/fmicb.2015.00399. eCollection 2015.

20.

Pesticide Side Effects in an Agricultural Soil Ecosystem as Measured by amoA Expression Quantification and Bacterial Diversity Changes.

Feld L, Hjelmsø MH, Nielsen MS, Jacobsen AD, Rønn R, Ekelund F, Krogh PH, Strobel BW, Jacobsen CS.

PLoS One. 2015 May 4;10(5):e0126080. doi: 10.1371/journal.pone.0126080. eCollection 2015.

21.

Microbial abundance in surface ice on the Greenland Ice Sheet.

Stibal M, Gözdereliler E, Cameron KA, Box JE, Stevens IT, Gokul JK, Schostag M, Zarsky JD, Edwards A, Irvine-Fynn TD, Jacobsen CS.

Front Microbiol. 2015 Mar 24;6:225. doi: 10.3389/fmicb.2015.00225. eCollection 2015.

22.

Adhesion of and to soil in runoff as influenced by polyacrylamide.

Bech TB, Sbodio A, Jacobsen CS, Suslow T.

J Environ Qual. 2014 Nov;43(6):2002-8. doi: 10.2134/jeq2014.02.0058.

PMID:
25602217
23.

Different bulk and active bacterial communities in cryoconite from the margin and interior of the Greenland ice sheet.

Stibal M, Schostag M, Cameron KA, Hansen LH, Chandler DM, Wadham JL, Jacobsen CS.

Environ Microbiol Rep. 2015 Apr;7(2):293-300. doi: 10.1111/1758-2229.12246. Epub 2015 Jan 23.

PMID:
25405749
24.

Årligt symposium i Danmarks Mikrobiologiske Selskab.

Bjarnholt T, Jacobsen CS, Jensen LB.

Ugeskr Laeger. 2014 Jun 2;176(11A). pii: V66220. Danish. No abstract available.

PMID:
25186670
25.

Polymorphonuclear leukocytes restrict growth of Pseudomonas aeruginosa in the lungs of cystic fibrosis patients.

Kragh KN, Alhede M, Jensen PØ, Moser C, Scheike T, Jacobsen CS, Seier Poulsen S, Eickhardt-Sørensen SR, Trøstrup H, Christoffersen L, Hougen HP, Rickelt LF, Kühl M, Høiby N, Bjarnsholt T.

Infect Immun. 2014 Nov;82(11):4477-86. doi: 10.1128/IAI.01969-14. Epub 2014 Aug 11.

26.

Bacterial diversity in snow on North Pole ice floes.

Hauptmann AL, Stibal M, Bælum J, Sicheritz-Pontén T, Brunak S, Bowman JS, Hansen LH, Jacobsen CS, Blom N.

Extremophiles. 2014 Nov;18(6):945-51. doi: 10.1007/s00792-014-0660-y. Epub 2014 Jun 21.

27.

Agricultural soils, pesticides and microbial diversity.

Jacobsen CS, Hjelmsø MH.

Curr Opin Biotechnol. 2014 Jun;27:15-20. doi: 10.1016/j.copbio.2013.09.003. Epub 2013 Oct 1. Review.

PMID:
24863892
28.

Steam-treatment-based soil remediation promotes heat-tolerant, potentially pathogenic microbiota.

Altenburger A, Bender M, Ekelund F, Elmholt S, Jacobsen CS.

Environ Technol. 2014 Mar-Apr;35(5-8):773-80.

PMID:
24645459
29.

High-resolution melt analysis for rapid comparison of bacterial community compositions.

Hjelmsø MH, Hansen LH, Baelum J, Feld L, Holben WE, Jacobsen CS.

Appl Environ Microbiol. 2014 Jun;80(12):3568-75.

30.

The impact of bioaugmentation on dechlorination kinetics and on microbial dechlorinating communities in subsurface clay till.

Bælum J, Scheutz C, Chambon JC, Jensen CM, Brochmann RP, Dennis P, Laier T, Broholm MM, Bjerg PL, Binning PJ, Jacobsen CS.

Environ Pollut. 2014 Mar;186:149-57. doi: 10.1016/j.envpol.2013.11.013. Epub 2013 Dec 26.

PMID:
24374375
31.

Ageing of atrazine in manure amended soils assessed by bioavailability to Pseudomonas sp. strain ADP.

Glæsner N, Bælum J, Strobel BW, Jacobsen CS.

Biodegradation. 2014 Apr;25(2):217-25. doi: 10.1007/s10532-013-9654-1. Epub 2013 Jul 4.

PMID:
23824341
32.

A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment.

Bælum J, Chambon JC, Scheutz C, Binning PJ, Laier T, Bjerg PL, Jacobsen CS.

Water Res. 2013 May 1;47(7):2467-78. doi: 10.1016/j.watres.2013.02.016. Epub 2013 Feb 18.

PMID:
23490098
33.

Identification of chlorinated solvents degradation zones in clay till by high resolution chemical, microbial and compound specific isotope analysis.

Damgaard I, Bjerg PL, Bælum J, Scheutz C, Hunkeler D, Jacobsen CS, Tuxen N, Broholm MM.

J Contam Hydrol. 2013 Mar;146:37-50. doi: 10.1016/j.jconhyd.2012.11.010. Epub 2012 Dec 30.

PMID:
23357226
34.

Modeling of phenoxy acid herbicide mineralization and growth of microbial degraders in 15 soils monitored by quantitative real-time PCR of the functional tfdA gene.

Bælum J, Prestat E, David MM, Strobel BW, Jacobsen CS.

Appl Environ Microbiol. 2012 Aug;78(15):5305-12. doi: 10.1128/AEM.00990-12. Epub 2012 May 25.

35.

Microbial degradation of 2,4-dichlorophenoxyacetic acid on the Greenland ice sheet.

Stibal M, Bælum J, Holben WE, Sørensen SR, Jensen A, Jacobsen CS.

Appl Environ Microbiol. 2012 Aug;78(15):5070-6. doi: 10.1128/AEM.00400-12. Epub 2012 May 11.

36.

The Hall effect in the organic conductor TTF-TCNQ: choice of geometry for accurate measurements of a highly anisotropic system.

Tafra E, Culo M, Basletić M, Korin-Hamzić B, Hamzić A, Jacobsen CS.

J Phys Condens Matter. 2012 Feb 1;24(4):045602. doi: 10.1088/0953-8984/24/4/045602. Epub 2012 Jan 4.

PMID:
22214728
37.

Leaching of Salmonella enterica in clay columns comparing two manure application methods.

Bech T, Dalsgaard A, Jacobsen OS, Jacobsen CS.

Ground Water. 2011 Jan-Feb;49(1):32-42. doi: 10.1111/j.1745-6584.2010.00766.x. Epub 2010 Oct 29.

PMID:
21039451
38.

Assessing chlorinated ethene degradation in a large scale contaminant plume by dual carbon-chlorine isotope analysis and quantitative PCR.

Hunkeler D, Abe Y, Broholm MM, Jeannottat S, Westergaard C, Jacobsen CS, Aravena R, Bjerg PL.

J Contam Hydrol. 2011 Jan 25;119(1-4):69-79. doi: 10.1016/j.jconhyd.2010.09.009. Epub 2010 Sep 29.

PMID:
21030108
39.

Atrazine is not readily mineralised in 24 temperate soils regardless of pre-exposure to triazine herbicides.

Glaesner N, Baelum J, Strobel BW, Jacobsen CS.

Environ Pollut. 2010 Dec;158(12):3670-4. doi: 10.1016/j.envpol.2010.07.039. Epub 2010 Sep 20.

PMID:
20850214
40.

Influence of temperature and predation on survival of Salmonella enterica serovar Typhimurium and expression of invA in soil and manure-amended soil.

García R, Baelum J, Fredslund L, Santorum P, Jacobsen CS.

Appl Environ Microbiol. 2010 Aug;76(15):5025-31. doi: 10.1128/AEM.00628-10. Epub 2010 Jun 18.

41.

Field evaluation of biological enhanced reductive dechlorination of chloroethenes in clayey till.

Scheutz C, Broholm MM, Durant ND, Weeth EB, Jørgensen TH, Dennis P, Jacobsen CS, Cox EE, Chambon JC, Bjerg PL.

Environ Sci Technol. 2010 Jul 1;44(13):5134-41. doi: 10.1021/es1003044.

PMID:
20527918
42.

Comparison of 16S rRNA gene phylogeny and functional tfdA gene distribution in thirty-one different 2,4-dichlorophenoxyacetic acid and 4-chloro-2-methylphenoxyacetic acid degraders.

Baelum J, Jacobsen CS, Holben WE.

Syst Appl Microbiol. 2010 Mar;33(2):67-70. doi: 10.1016/j.syapm.2010.01.001. Epub 2010 Mar 5.

PMID:
20206455
43.

Presence of psychrotolerant phenanthrene-mineralizing bacterial populations in contaminated soils from the Greenland High Arctic.

Sørensen SR, Johnsen AR, Jensen A, Jacobsen CS.

FEMS Microbiol Lett. 2010 Apr;305(2):148-54. doi: 10.1111/j.1574-6968.2010.01920.x. Epub 2010 Feb 3.

44.

Transport and distribution of Salmonella enterica serovar Typhimurium in loamy and sandy soil monoliths with applied liquid manure.

Bech TB, Johnsen K, Dalsgaard A, Laegdsmand M, Jacobsen OH, Jacobsen CS.

Appl Environ Microbiol. 2010 Feb;76(3):710-4. doi: 10.1128/AEM.00615-09. Epub 2009 Dec 18.

45.

Mineralization of the allelochemical sorgoleone in soil.

Gimsing AL, Baelum J, Dayan FE, Locke MA, Sejerø LH, Jacobsen CS.

Chemosphere. 2009 Aug;76(8):1041-7. doi: 10.1016/j.chemosphere.2009.04.048. Epub 2009 Jun 2.

PMID:
19493559
46.

TaqMan probe-based real-time PCR assay for detection and discrimination of class I, II, and III tfdA genes in soils treated with phenoxy acid herbicides.

Baelum J, Jacobsen CS.

Appl Environ Microbiol. 2009 May;75(9):2969-72. doi: 10.1128/AEM.02051-08. Epub 2009 Feb 27.

47.

Spatial variation in 2-methyl-4-chlorophenoxyacetic acid mineralization and sorption in a sandy soil at field level.

Fredslund L, Vinther FP, Brinch UC, Elsgaard L, Rosenberg P, Jacobsen CS.

J Environ Qual. 2008 Aug 8;37(5):1918-28. doi: 10.2134/jeq2006.0208. Print 2008 Sep-Oct.

PMID:
18689753
48.

Field-scale variation in microbial activity and soil properties in relation to mineralization and sorption of pesticides in a sandy soil.

Vinther FP, Brinch UC, Elsgaard L, Fredslund L, Iversen BV, Torp S, Jacobsen CS.

J Environ Qual. 2008 Aug 8;37(5):1710-8. doi: 10.2134/jeq2006.0201. Print 2008 Sep-Oct.

PMID:
18689732
49.

Variation of MCPA, metribuzine, methyltriazine-amine and glyphosate degradation, sorption, mineralization and leaching in different soil horizons.

Jacobsen CS, van der Keur P, Iversen BV, Rosenberg P, Barlebo HC, Torp S, Vosgerau H, Juhler RK, Ernstsen V, Rasmussen J, Brinch UC, Jacobsen OH.

Environ Pollut. 2008 Dec;156(3):794-802. doi: 10.1016/j.envpol.2008.06.002. Epub 2008 Jul 21.

PMID:
18639963
50.

Surface motility of polycyclic aromatic hydrocarbon (PAH)-degrading mycobacteria.

Fredslund L, Sniegowski K, Wick LY, Jacobsen CS, De Mot R, Springael D.

Res Microbiol. 2008 May;159(4):255-62. doi: 10.1016/j.resmic.2008.02.007. Epub 2008 Mar 19.

PMID:
18440203

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