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Items: 1 to 50 of 335

1.

A new source of root-knot nematode resistance from Arachis stenosperma incorporated into allotetraploid peanut (Arachis hypogaea).

Ballén-Taborda C, Chu Y, Ozias-Akins P, Timper P, Holbrook CC, Jackson SA, Bertioli DJ, Leal-Bertioli SCM.

Sci Rep. 2019 Nov 27;9(1):17702. doi: 10.1038/s41598-019-54183-1.

2.

ClinGen Myeloid Malignancy Variant Curation Expert Panel recommendations for germline RUNX1 variants.

Luo X, Feurstein S, Mohan S, Porter CC, Jackson SA, Keel S, Chicka M, Brown AL, Kesserwan C, Agarwal A, Luo M, Li Z, Ross JE, Baliakas P, Pineda-Alvarez D, DiNardo CD, Bertuch AA, Mehta N, Vulliamy T, Wang Y, Nichols KE, Malcovati L, Walsh MF, Rawlings LH, McWeeney SK, Soulier J, Raimbault A, Routbort MJ, Zhang L, Ryan G, Speck NA, Plon SE, Wu D, Godley LA.

Blood Adv. 2019 Oct 22;3(20):2962-2979. doi: 10.1182/bloodadvances.2019000644.

5.

Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide A by the Marine Sponge Isolate Streptomyces sp. SM17 When Compared to Its Terrestrial Relative S. albidoflavus J1074.

Almeida EL, Kaur N, Jennings LK, Carrillo Rincón AF, Jackson SA, Thomas OP, Dobson ADW.

Microorganisms. 2019 Sep 26;7(10). pii: E394. doi: 10.3390/microorganisms7100394.

6.

Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean.

Ji L, Mathioni SM, Johnson S, Tucker D, Bewick AJ, Do Kim K, Daron J, Slotkin RK, Jackson SA, Parrott WA, Meyers BC, Schmitz RJ.

Plant Cell. 2019 Oct;31(10):2315-2331. doi: 10.1105/tpc.19.00255. Epub 2019 Aug 22.

PMID:
31439802
7.

Construction and comparison of three reference-quality genome assemblies for soybean.

Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam HM, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT.

Plant J. 2019 Dec;100(5):1066-1082. doi: 10.1111/tpj.14500. Epub 2019 Oct 28.

PMID:
31433882
8.

The autoregulator Aca2 mediates anti-CRISPR repression.

Birkholz N, Fagerlund RD, Smith LM, Jackson SA, Fineran PC.

Nucleic Acids Res. 2019 Oct 10;47(18):9658-9665. doi: 10.1093/nar/gkz721.

10.

Biochemical Characterization of a Novel Monospecific Endo-β-1,4-Glucanase Belonging to GH Family 5 From a Rhizosphere Metagenomic Library.

Wierzbicka-Woś A, Henneberger R, Batista-García RA, Martínez-Ávila L, Jackson SA, Kennedy J, Dobson ADW.

Front Microbiol. 2019 Jun 14;10:1342. doi: 10.3389/fmicb.2019.01342. eCollection 2019.

11.

EcoFABs: advancing microbiome science through standardized fabricated ecosystems.

Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, Venturelli OS, Wallenstein MD, Shank EA, Northen TR.

Nat Methods. 2019 Jul;16(7):567-571. doi: 10.1038/s41592-019-0465-0. No abstract available.

12.

Breeding crops to feed 10 billion.

Hickey LT, N Hafeez A, Robinson H, Jackson SA, Leal-Bertioli SCM, Tester M, Gao C, Godwin ID, Hayes BJ, Wulff BBH.

Nat Biotechnol. 2019 Jul;37(7):744-754. doi: 10.1038/s41587-019-0152-9. Epub 2019 Jun 17. Review.

PMID:
31209375
13.

Bacterial dormancy curbs phage epidemics.

Jackson SA, Fineran PC.

Nature. 2019 Jun;570(7760):173-174. doi: 10.1038/d41586-019-01595-8. No abstract available.

PMID:
31182829
14.

Improving End-User Trust in the Quality of Commercial Probiotic Products.

Jackson SA, Schoeni JL, Vegge C, Pane M, Stahl B, Bradley M, Goldman VS, Burguière P, Atwater JB, Sanders ME.

Front Microbiol. 2019 Apr 17;10:739. doi: 10.3389/fmicb.2019.00739. eCollection 2019. Review.

15.

Predictors of imminent non-vertebral fracture in elderly women with osteoporosis, low bone mass, or a history of fracture, based on data from the population-based Canadian Multicentre Osteoporosis Study (CaMos).

Adachi JD, Berger C, Barron R, Weycker D, Anastassiades TP, Davison KS, Hanley DA, Ioannidis G, Jackson SA, Josse RG, Kaiser SM, Kovacs CS, Leslie WD, Morin SN, Papaioannou A, Prior JC, Shyta E, Silvia A, Towheed T, Goltzman D.

Arch Osteoporos. 2019 May 16;14(1):53. doi: 10.1007/s11657-019-0598-x.

PMID:
31098708
16.

A phase Ib study of entinostat plus lapatinib with or without trastuzumab in patients with HER2-positive metastatic breast cancer that progressed during trastuzumab treatment.

Lim B, Murthy RK, Lee J, Jackson SA, Iwase T, Davis DW, Willey JS, Wu J, Shen Y, Tripathy D, Alvarez R, Ibrahim NK, Brewster AM, Barcenas CH, Brown PH, Giordano SH, Moulder SL, Booser DJ, Moscow JA, Piekarz R, Valero V, Ueno NT.

Br J Cancer. 2019 Jun;120(12):1105-1112. doi: 10.1038/s41416-019-0473-y. Epub 2019 May 17.

PMID:
31097774
17.

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J.

Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1.

PMID:
31043755
18.

Genome-wide nucleotide patterns and potential mechanisms of genome divergence following domestication in maize and soybean.

Wang J, Li X, Do Kim K, Scanlon MJ, Jackson SA, Springer NM, Yu J.

Genome Biol. 2019 Apr 25;20(1):74. doi: 10.1186/s13059-019-1683-6.

19.

Machine learning and complex biological data.

Xu C, Jackson SA.

Genome Biol. 2019 Apr 16;20(1):76. doi: 10.1186/s13059-019-1689-0.

20.

Impact of Chromosomal Rearrangements on the Interpretation of Lupin Karyotype Evolution.

Susek K, Bielski W, Czyż KB, Hasterok R, Jackson SA, Wolko B, Naganowska B.

Genes (Basel). 2019 Apr 1;10(4). pii: E259. doi: 10.3390/genes10040259.

21.

Microbial Population Changes in Decaying Ascophyllum nodosum Result in Macroalgal-Polysaccharide-Degrading Bacteria with Potential Applicability in Enzyme-Assisted Extraction Technologies.

Ihua MW, Guihéneuf F, Mohammed H, Margassery LM, Jackson SA, Stengel DB, Clarke DJ, Dobson ADW.

Mar Drugs. 2019 Mar 29;17(4). pii: E200. doi: 10.3390/md17040200.

22.

Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA.

Samoluk SS, Chalup LMI, Chavarro C, Robledo G, Bertioli DJ, Jackson SA, Seijo G.

Planta. 2019 May;249(5):1405-1415. doi: 10.1007/s00425-019-03096-4. Epub 2019 Jan 24.

PMID:
30680457
23.

Imprecise Spacer Acquisition Generates CRISPR-Cas Immune Diversity through Primed Adaptation.

Jackson SA, Birkholz N, Malone LM, Fineran PC.

Cell Host Microbe. 2019 Feb 13;25(2):250-260.e4. doi: 10.1016/j.chom.2018.12.014. Epub 2019 Jan 17.

PMID:
30661951
24.

Determining the clinical validity of hereditary colorectal cancer and polyposis susceptibility genes using the Clinical Genome Resource Clinical Validity Framework.

Seifert BA, McGlaughon JL, Jackson SA, Ritter DI, Roberts ME, Schmidt RJ, Thompson BA, Jimenez S, Trapp M, Lee K, Plon SE, Offit K, Stadler ZK, Zhang L, Greenblatt MS, Ferber MJ.

Genet Med. 2019 Jul;21(7):1507-1516. doi: 10.1038/s41436-018-0373-1. Epub 2018 Dec 7.

25.

Draft Genome Sequences of 72 Isolates from All Four Species of Shigella.

Gangiredla J, Mammel MK, Lacher DW, Tartera C, Jackson SA, Patel IR, Elkins CA, Mukherjee A.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01399-18. doi: 10.1128/MRA.01399-18. eCollection 2018 Nov.

26.

Graphene Facilitates Biomethane Production from Protein-Derived Glycine in Anaerobic Digestion.

Lin R, Deng C, Cheng J, Xia A, Lens PNL, Jackson SA, Dobson ADW, Murphy JD.

iScience. 2018 Dec 21;10:158-170. doi: 10.1016/j.isci.2018.11.030. Epub 2018 Nov 22.

27.

Incremental value of DNA analysis in pancreatic cysts stratified by clinical risk factors.

Farrell JJ, Al-Haddad MA, Jackson SA, Gonda TA.

Gastrointest Endosc. 2019 Apr;89(4):832-841.e2. doi: 10.1016/j.gie.2018.10.049. Epub 2018 Nov 14.

PMID:
30447214
28.

Selective Role of the Putamen in Serial Reversal Learning in the Marmoset.

Jackson SAW, Horst NK, Axelsson SFA, Horiguchi N, Cockcroft GJ, Robbins TW, Roberts AC.

Cereb Cortex. 2019 Jan 1;29(1):447-460. doi: 10.1093/cercor/bhy276.

29.

Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, da Rosa Farias D, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Nov;50(11):1618. doi: 10.1038/s41588-018-0261-2.

PMID:
30291357
30.

Parallel selection on a dormancy gene during domestication of crops from multiple families.

Wang M, Li W, Fang C, Xu F, Liu Y, Wang Z, Yang R, Zhang M, Liu S, Lu S, Lin T, Tang J, Wang Y, Wang H, Lin H, Zhu B, Chen M, Kong F, Liu B, Zeng D, Jackson SA, Chu C, Tian Z.

Nat Genet. 2018 Oct;50(10):1435-1441. doi: 10.1038/s41588-018-0229-2. Epub 2018 Sep 24.

PMID:
30250128
31.

Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems.

Nicholson TJ, Jackson SA, Croft BI, Staals RHJ, Fineran PC, Brown CM.

RNA Biol. 2019 Apr;16(4):566-576. doi: 10.1080/15476286.2018.1509662. Epub 2018 Sep 18.

32.

The Diagnostic Yield of Malignancy Comparing Cytology, FISH, and Molecular Analysis of Cell Free Cytology Brush Supernatant in Patients With Biliary Strictures Undergoing Endoscopic Retrograde Cholangiography (ERC): A Prospective Study.

Kushnir VM, Mullady DK, Das K, Lang G, Hollander TG, Murad FM, Jackson SA, Toney NA, Finkelstein SD, Edmundowicz SA.

J Clin Gastroenterol. 2019 Oct;53(9):686-692. doi: 10.1097/MCG.0000000000001118.

33.

Extending the "One Strain Many Compounds" (OSMAC) Principle to Marine Microorganisms.

Romano S, Jackson SA, Patry S, Dobson ADW.

Mar Drugs. 2018 Jul 23;16(7). pii: E244. doi: 10.3390/md16070244. Review.

34.

Segmental allopolyploidy in action: Increasing diversity through polyploid hybridization and homoeologous recombination.

Leal-Bertioli SCM, Godoy IJ, Santos JF, Doyle JJ, Guimarães PM, Abernathy BL, Jackson SA, Moretzsohn MC, Bertioli DJ.

Am J Bot. 2018 Jun;105(6):1053-1066. doi: 10.1002/ajb2.1112. Epub 2018 Jul 9.

35.

It's the deceiver, not the receiver: No individual differences when detecting deception in a foreign and a native language.

Law MKH, Jackson SA, Aidman E, Geiger M, Olderbak S, Kleitman S.

PLoS One. 2018 May 3;13(5):e0196384. doi: 10.1371/journal.pone.0196384. eCollection 2018.

36.

High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut.

Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, Ozias-Akins P, Jackson SA, Varshney RK, Guo B.

Plant Biotechnol J. 2018 Nov;16(11):1954-1967. doi: 10.1111/pbi.12930. Epub 2018 May 15.

37.

Validation of a biomarker panel in Barrett's esophagus to predict progression to esophageal adenocarcinoma.

Eluri S, Klaver E, Duits LC, Jackson SA, Bergman JJ, Shaheen NJ.

Dis Esophagus. 2018 Nov 1;31(11). doi: 10.1093/dote/doy026.

38.

Correction: Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.

Silas S, Lucas-Elio P, Jackson SA, Aroca-Crevillén A, Hansen LL, Fineran PC, Fire AZ, Sánchez-Amat A.

Elife. 2018 Apr 4;7. pii: e36853. doi: 10.7554/eLife.36853. No abstract available.

39.

AbiEi Binds Cooperatively to the Type IV abiE Toxin-Antitoxin Operator Via a Positively-Charged Surface and Causes DNA Bending and Negative Autoregulation.

Hampton HG, Jackson SA, Fagerlund RD, Vogel AIM, Dy RL, Blower TR, Fineran PC.

J Mol Biol. 2018 Apr 13;430(8):1141-1156. doi: 10.1016/j.jmb.2018.02.022. Epub 2018 Mar 6.

PMID:
29518409
40.

Genic C-Methylation in Soybean Is Associated with Gene Paralogs Relocated to Transposable Element-Rich Pericentromeres.

El Baidouri M, Kim KD, Abernathy B, Li YH, Qiu LJ, Jackson SA.

Mol Plant. 2018 Mar 5;11(3):485-495. doi: 10.1016/j.molp.2018.02.006. Epub 2018 Feb 21.

41.

Diverse and Abundant Secondary Metabolism Biosynthetic Gene Clusters in the Genomes of Marine Sponge Derived Streptomyces spp. Isolates.

Jackson SA, Crossman L, Almeida EL, Margassery LM, Kennedy J, Dobson ADW.

Mar Drugs. 2018 Feb 20;16(2). pii: E67. doi: 10.3390/md16020067.

42.

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.

Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.

Nat Genet. 2018 Feb;50(2):285-296. doi: 10.1038/s41588-018-0040-0. Epub 2018 Jan 22. Erratum in: Nat Genet. 2018 Nov;50(11):1618.

PMID:
29358651
43.

MSH6 and PMS2 germ-line pathogenic variants implicated in Lynch syndrome are associated with breast cancer.

Roberts ME, Jackson SA, Susswein LR, Zeinomar N, Ma X, Marshall ML, Stettner AR, Milewski B, Xu Z, Solomon BD, Terry MB, Hruska KS, Klein RT, Chung WK.

Genet Med. 2018 Oct;20(10):1167-1174. doi: 10.1038/gim.2017.254. Epub 2018 Jan 18.

44.

Genetic and epigenetic divergence of duplicate genes in two legume species.

Xu C, Nadon BD, Kim KD, Jackson SA.

Plant Cell Environ. 2018 Sep;41(9):2033-2044. doi: 10.1111/pce.13127. Epub 2018 Mar 4.

PMID:
29314059
45.

Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.

Richard MMS, Gratias A, Thareau V, Kim KD, Balzergue S, Joets J, Jackson SA, Geffroy V.

DNA Res. 2018 Apr 1;25(2):161-172. doi: 10.1093/dnares/dsx046.

46.

Rapid response teams: What's the latest?

Jackson SA.

Nursing. 2017 Dec;47(12):34-41. doi: 10.1097/01.NURSE.0000526885.10306.21. Review. No abstract available.

PMID:
29112046
47.

Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.

Gao D, Chu Y, Xia H, Xu C, Heyduk K, Abernathy B, Ozias-Akins P, Leebens-Mack JH, Jackson SA.

Mol Biol Evol. 2018 Feb 1;35(2):354-364. doi: 10.1093/molbev/msx275.

48.

Synthesis of Nm-PHB (nanomelanin-polyhydroxy butyrate) nanocomposite film and its protective effect against biofilm-forming multi drug resistant Staphylococcus aureus.

Kiran GS, Jackson SA, Priyadharsini S, Dobson ADW, Selvin J.

Sci Rep. 2017 Aug 22;7(1):9167. doi: 10.1038/s41598-017-08816-y.

49.

Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems.

Silas S, Lucas-Elio P, Jackson SA, Aroca-Crevillén A, Hansen LL, Fineran PC, Fire AZ, Sánchez-Amat A.

Elife. 2017 Aug 17;6. pii: e27601. doi: 10.7554/eLife.27601. Erratum in: Elife. 2018 Apr 04;7:.

50.

Epigenomics: dissecting hybridization and polyploidization.

Jackson SA.

Genome Biol. 2017 Jun 19;18(1):117. doi: 10.1186/s13059-017-1254-7.

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