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Items: 22

1.

htsget: a protocol for securely streaming genomic data.

Kelleher J, Lin M, Albach CH, Birney E, Davies R, Gourtovaia M, Glazer D, Gonzalez CY, Jackson DK, Kemp A, Marshall J, Nowak A, Senf A, Tovar-Corona JM, Vikhorev A, Keane TM; GA4GH Streaming Task Team.

Bioinformatics. 2019 Jan 1;35(1):119-121. doi: 10.1093/bioinformatics/bty492.

2.

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.

Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z.

Sci Rep. 2017 Jun 21;7(1):3935. doi: 10.1038/s41598-017-03996-z.

3.

High-throughput and quantitative genome-wide messenger RNA sequencing for molecular phenotyping.

Collins JE, Wali N, Sealy IM, Morris JA, White RJ, Leonard SR, Jackson DK, Jones MC, Smerdon NC, Zamora J, Dooley CM, Carruthers SN, Barrett JC, Stemple DL, Busch-Nentwich EM.

BMC Genomics. 2015 Aug 5;16:578. doi: 10.1186/s12864-015-1788-6.

4.

Optical lock-in detection imaging microscopy for contrast-enhanced imaging in living cells.

Marriott G, Mao S, Sakata T, Ran J, Jackson DK, Petchprayoon C, Gomez TJ, Warp E, Tulyathan O, Aaron HL, Isacoff EY, Yan Y.

Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17789-94. doi: 10.1073/pnas.0808882105. Epub 2008 Nov 12.

5.

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis.

Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Gräf S, Johnson N, Herrero J, Tomazou EM, Thorne NP, Bäckdahl L, Herberth M, Howe KL, Jackson DK, Miretti MM, Marioni JC, Birney E, Hubbard TJ, Durbin R, Tavaré S, Beck S.

Nat Biotechnol. 2008 Jul;26(7):779-85. doi: 10.1038/nbt1414.

6.

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs).

Rakyan VK, Down TA, Thorne NP, Flicek P, Kulesha E, Gräf S, Tomazou EM, Bäckdahl L, Johnson N, Herberth M, Howe KL, Jackson DK, Miretti MM, Fiegler H, Marioni JC, Birney E, Hubbard TJ, Carter NP, Tavaré S, Beck S.

Genome Res. 2008 Sep;18(9):1518-29. doi: 10.1101/gr.077479.108. Epub 2008 Jun 24.

7.

Generation of a genomic tiling array of the human major histocompatibility complex (MHC) and its application for DNA methylation analysis.

Tomazou EM, Rakyan VK, Lefebvre G, Andrews R, Ellis P, Jackson DK, Langford C, Francis MD, Bäckdahl L, Miretti M, Coggill P, Ottaviani D, Sheer D, Murrell A, Beck S.

BMC Med Genomics. 2008 May 30;1:19. doi: 10.1186/1755-8794-1-19.

8.

Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project.

Horton R, Gibson R, Coggill P, Miretti M, Allcock RJ, Almeida J, Forbes S, Gilbert JG, Halls K, Harrow JL, Hart E, Howe K, Jackson DK, Palmer S, Roberts AN, Sims S, Stewart CA, Traherne JA, Trevanion S, Wilming L, Rogers J, de Jong PJ, Elliott JF, Sawcer S, Todd JA, Trowsdale J, Beck S.

Immunogenetics. 2008 Jan;60(1):1-18. doi: 10.1007/s00251-007-0262-2. Epub 2008 Jan 10.

9.

Optically switchable chelates: optical control and sensing of metal ions.

Sakata T, Jackson DK, Mao S, Marriott G.

J Org Chem. 2008 Jan 4;73(1):227-33. Epub 2007 Dec 12.

10.

ProServer: a simple, extensible Perl DAS server.

Finn RD, Stalker JW, Jackson DK, Kulesha E, Clements J, Pettett R.

Bioinformatics. 2007 Jun 15;23(12):1568-70. Epub 2007 Jan 18.

11.

DNA methylation profiling of human chromosomes 6, 20 and 22.

Eckhardt F, Lewin J, Cortese R, Rakyan VK, Attwood J, Burger M, Burton J, Cox TV, Davies R, Down TA, Haefliger C, Horton R, Howe K, Jackson DK, Kunde J, Koenig C, Liddle J, Niblett D, Otto T, Pettett R, Seemann S, Thompson C, West T, Rogers J, Olek A, Berlin K, Beck S.

Nat Genet. 2006 Dec;38(12):1378-85. Epub 2006 Oct 29.

12.

Identifying potentially ineffective care in a community hospital.

Fleegler BM, Jackson DK, Turnbull J, Honeycutt C, Azola C, Sirio CA.

Crit Care Med. 2002 Aug;30(8):1803-7.

PMID:
12163797
13.

Adaptive effects of spaceflight as revealed by short-term partial weight suspension.

Jackson DK, Newman DJ.

Aviat Space Environ Med. 2000 Sep;71(9 Suppl):A151-60.

PMID:
10993329
14.

Efficacy of conventional endoscopic disinfection and sterilization methods against Helicobacter pylori contamination.

Cronmiller JR, Nelson DK, Jackson DK, Kim CH.

Helicobacter. 1999 Sep;4(3):198-203.

PMID:
10469194
15.

Antimicrobial efficacy of endoscopic disinfection procedures: a controlled, multifactorial investigation.

Cronmiller JR, Nelson DK, Salman G, Jackson DK, Dean RS, Hsu JJ, Kim CH.

Gastrointest Endosc. 1999 Aug;50(2):152-8.

PMID:
10425405
16.

Altered astronaut lower limb and mass center kinematics in downward jumping following space flight.

Newman DJ, Jackson DK, Bloomberg JJ.

Exp Brain Res. 1997 Oct;117(1):30-42.

PMID:
9386002
17.

Spatial orientation and posture during and following weightlessness: human experiments on Spacelab Life Sciences 1.

Young LR, Oman CM, Merfeld D, Watt D, Roy S, DeLuca C, Balkwill D, Christie J, Groleau N, Jackson DK, et al.

J Vestib Res. 1993 Fall;3(3):231-9. Review.

PMID:
8275259
18.

Multisensory integration in microgravity.

Young LR, Jackson DK, Groleau N, Modestino S.

Ann N Y Acad Sci. 1992 May 22;656:340-53. No abstract available.

PMID:
1599154
19.

Enhancing the effectiveness of abortive therapy: a controlled evaluation of self-management training.

Holroyd KA, Cordingley GE, Pingel JD, Jerome A, Theofanous AG, Jackson DK, Leard L.

Headache. 1989 Mar;29(3):148-53.

PMID:
2496052
20.

Competency-based orientation.

Keech RR, Jackson DK.

Nurs Manage. 1987 Apr;18(4):82, 84. No abstract available.

PMID:
3645469
21.

DNA-base ratios of Bacillus strains related to numerical and classical taxonomy.

Bonde GJ, Jackson DK.

J Gen Microbiol. 1971 Dec;69(3):7-8. No abstract available.

PMID:
5144370
22.

Relation between mycoplasmas and leukaemia and related diseases.

Fallon RJ, Jackson DK.

Br Med J. 1968 Oct 26;4(5625):225-8.

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