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Demonstration of the Use of Environmental DNA for the Non-Invasive Genotyping of a Bivalve Mollusk, the European Flat Oyster (Ostrea edulis).

Holman LE, Hollenbeck CM, Ashton TJ, Johnston IA.

Front Genet. 2019 Nov 19;10:1159. doi: 10.3389/fgene.2019.01159. eCollection 2019.


Influence of feed ration size on somatic and muscle growth in landlocked dwarf and farmed Atlantic salmon Salmo salar.

Andersen Ø, Vieira V, Dessen JE, Johnston IA.

J Fish Biol. 2019 Apr;94(4):614-620. doi: 10.1111/jfb.13942. Epub 2019 Mar 18.


Duplication of a Single myhz1.1 Gene Facilitated the Ability of Goldfish (Carassius auratus) to Alter Fast Muscle Contractile Properties With Seasonal Temperature Change.

Garcia de la Serrana D, Wreggelsworth K, Johnston IA.

Front Physiol. 2018 Dec 4;9:1724. doi: 10.3389/fphys.2018.01724. eCollection 2018.


Genomic Tools and Selective Breeding in Molluscs.

Hollenbeck CM, Johnston IA.

Front Genet. 2018 Jul 18;9:253. doi: 10.3389/fgene.2018.00253. eCollection 2018. Review.


Divergent regulation of insulin-like growth factor binding protein genes in cultured Atlantic salmon myotubes under different models of catabolism and anabolism.

Garcia de la Serrana D, Fuentes EN, Martin SAM, Johnston IA, Macqueen DJ.

Gen Comp Endocrinol. 2017 Jun 1;247:53-65. doi: 10.1016/j.ygcen.2017.01.017. Epub 2017 Jan 19.


Comparison of the transcriptional responses of skeletal muscle and bone to a flooding dose of leucine in the gilthead sea bream (Sparus aurata).

Garcia de la Serrana D, Mareco EA, LA Vieira V, Power DM, Johnston IA.

Comp Biochem Physiol B Biochem Mol Biol. 2016 Sep;199:50-57. doi: 10.1016/j.cbpb.2016.02.003. Epub 2016 Feb 26.


Characterization of the transcriptome of fast and slow muscle myotomal fibres in the pacu (Piaractus mesopotamicus).

Mareco EA, Garcia de la Serrana D, Johnston IA, Dal-Pai-Silva M.

BMC Genomics. 2015 Mar 14;16:182. doi: 10.1186/s12864-015-1423-6.


Characterisation and expression analysis of cathepsins and ubiquitin-proteasome genes in gilthead sea bream (Sparus aurata) skeletal muscle.

Salmerón C, Navarro I, Johnston IA, Gutiérrez J, Capilla E.

BMC Res Notes. 2015 Apr 15;8:149. doi: 10.1186/s13104-015-1121-0.


Profiling of the embryonic Atlantic halibut (Hippoglossus hippoglossus L.) transcriptome reveals maternal transcripts as potential markers of embryo quality.

Mommens M, Fernandes JM, Tollefsen KE, Johnston IA, Babiak I.

BMC Genomics. 2014 Sep 30;15:829. doi: 10.1186/1471-2164-15-829.


Muscle fibre size optimisation provides flexibility for energy budgeting in calorie-restricted coho salmon transgenic for growth hormone.

Johnston IA, de la Serrana DG, Devlin RH.

J Exp Biol. 2014 Oct 1;217(Pt 19):3392-5. doi: 10.1242/jeb.107664. Epub 2014 Aug 7.


Cardiac myoglobin deficit has evolved repeatedly in teleost fishes.

Macqueen DJ, Garcia de la Serrana D, Johnston IA.

Biol Lett. 2014 Jun;10(6). pii: 20140225. doi: 10.1098/rsbl.2014.0225.


Systematic variation in the pattern of gene paralog retention between the teleost superorders Ostariophysi and Acanthopterygii.

Garcia de la Serrana D, Mareco EA, Johnston IA.

Genome Biol Evol. 2014 Apr;6(4):981-7. doi: 10.1093/gbe/evu074. Review.


A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification.

Macqueen DJ, Johnston IA.

Proc Biol Sci. 2014 Jan 22;281(1778):20132881. doi: 10.1098/rspb.2013.2881. Print 2014 Mar 7.


Characterisation and expression of myogenesis regulatory factors during in vitro myoblast development and in vivo fasting in the gilthead sea bream (Sparus aurata).

García de la serrana D, Codina M, Capilla E, Jiménez-Amilburu V, Navarro I, Du SJ, Johnston IA, Gutiérrez J.

Comp Biochem Physiol A Mol Integr Physiol. 2014 Jan;167:90-9. doi: 10.1016/j.cbpa.2013.10.020. Epub 2013 Oct 21.


Characterisation and expression of calpain family members in relation to nutritional status, diet composition and flesh texture in gilthead sea bream (Sparus aurata).

Salmerón C, García de la serrana D, Jiménez-Amilburu V, Fontanillas R, Navarro I, Johnston IA, Gutiérrez J, Capilla E.

PLoS One. 2013 Sep 25;8(9):e75349. doi: 10.1371/journal.pone.0075349. eCollection 2013.


Expression of heat shock protein (Hsp90) paralogues is regulated by amino acids in skeletal muscle of Atlantic salmon.

Garcia de la Serrana D, Johnston IA.

PLoS One. 2013 Sep 6;8(9):e74295. doi: 10.1371/journal.pone.0074295. eCollection 2013.


Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes.

Macqueen DJ, Garcia de la Serrana D, Johnston IA.

Mol Biol Evol. 2013 May;30(5):1060-76. doi: 10.1093/molbev/mst017. Epub 2013 Jan 29.


Development temperature has persistent effects on muscle growth responses in gilthead sea bream.

Garcia de la serrana D, Vieira VL, Andree KB, Darias M, Estévez A, Gisbert E, Johnston IA.

PLoS One. 2012;7(12):e51884. doi: 10.1371/journal.pone.0051884. Epub 2012 Dec 17.


Stac3 is required for myotube formation and myogenic differentiation in vertebrate skeletal muscle.

Bower NI, de la Serrana DG, Cole NJ, Hollway GE, Lee HT, Assinder S, Johnston IA.

J Biol Chem. 2012 Dec 21;287(52):43936-49. doi: 10.1074/jbc.M112.361311. Epub 2012 Oct 17.


Experimental selection for body size at age modifies early life-history traits and muscle gene expression in adult zebrafish.

Amaral IP, Johnston IA.

J Exp Biol. 2012 Nov 15;215(Pt 22):3895-904. doi: 10.1242/jeb.068908. Epub 2012 Aug 16.


Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish.

Scott GR, Johnston IA.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):14247-52. doi: 10.1073/pnas.1205012109. Epub 2012 Aug 13.


Fast skeletal muscle transcriptome of the gilthead sea bream (Sparus aurata) determined by next generation sequencing.

Garcia de la Serrana D, Estévez A, Andree K, Johnston IA.

BMC Genomics. 2012 May 11;13:181. doi: 10.1186/1471-2164-13-181.


Postprandial expression of growth-related genes in Atlantic salmon (Salmo salar L.) juveniles fasted for 1 week and fed a single meal to satiation.

Valente LM, Bower NI, Johnston IA.

Br J Nutr. 2012 Dec 28;108(12):2148-57. doi: 10.1017/S0007114512000396. Epub 2012 Apr 2.


Universal scaling rules predict evolutionary patterns of myogenesis in species with indeterminate growth.

Johnston IA, Kristjánsson BK, Paxton CG, Vieira VL, Macqueen DJ, Bell MA.

Proc Biol Sci. 2012 Jun 7;279(1736):2255-61. doi: 10.1098/rspb.2011.2536. Epub 2012 Jan 11.


Circadian expression of clock and putative clock-controlled genes in skeletal muscle of the zebrafish.

Amaral IP, Johnston IA.

Am J Physiol Regul Integr Comp Physiol. 2012 Jan 1;302(1):R193-206. doi: 10.1152/ajpregu.00367.2011. Epub 2011 Oct 26.


The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR-pathway gene expression.

Macqueen DJ, Kristjánsson BK, Paxton CG, Vieira VL, Johnston IA.

Mol Ecol. 2011 Aug;20(15):3167-84. doi: 10.1111/j.1365-294X.2011.05172.x. Epub 2011 Jun 29.


Growth and the regulation of myotomal muscle mass in teleost fish.

Johnston IA, Bower NI, Macqueen DJ.

J Exp Biol. 2011 May 15;214(Pt 10):1617-28. doi: 10.1242/jeb.038620. Review.


Targeted rapid amplification of cDNA ends (T-RACE)--an improved RACE reaction through degradation of non-target sequences.

Bower NI, Johnston IA.

Nucleic Acids Res. 2010 Nov;38(21):e194. doi: 10.1093/nar/gkq816. Epub 2010 Sep 15.


Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis.

Macqueen DJ, Bower NI, Johnston IA.

Biochem Biophys Res Commun. 2010 Oct 1;400(4):599-605. doi: 10.1016/j.bbrc.2010.08.110. Epub 2010 Sep 8.


Discovery and characterization of nutritionally regulated genes associated with muscle growth in Atlantic salmon.

Bower NI, Johnston IA.

Physiol Genomics. 2010 Oct;42A(2):114-30. doi: 10.1152/physiolgenomics.00065.2010. Epub 2010 Jul 27.


A novel tensile test method to assess texture and gaping in salmon fillets.

Ashton TJ, Michie I, Johnston IA.

J Food Sci. 2010 May;75(4):S182-90. doi: 10.1111/j.1750-3841.2010.01586.x.


Maternal gene expression in Atlantic halibut (Hippoglossus hippoglossus L.) and its relation to egg quality.

Mommens M, Fernandes JM, Bizuayehu TT, Bolla SL, Johnston IA, Babiak I.

BMC Res Notes. 2010 May 24;3:138. doi: 10.1186/1756-0500-3-138.


Characterisation and differential regulation of MAFbx/Atrogin-1 alpha and beta transcripts in skeletal muscle of Atlantic salmon (Salmo salar).

Bower NI, de la Serrana DG, Johnston IA.

Biochem Biophys Res Commun. 2010 May 28;396(2):265-71. doi: 10.1016/j.bbrc.2010.04.076. Epub 2010 Apr 24.


Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism.

Macqueen DJ, Kristjánsson BK, Johnston IA.

Physiol Genomics. 2010 Jun;42(1):134-48. doi: 10.1152/physiolgenomics.00045.2010. Epub 2010 Apr 13.


Paralogs of Atlantic salmon myoblast determination factor genes are distinctly regulated in proliferating and differentiating myogenic cells.

Bower NI, Johnston IA.

Am J Physiol Regul Integr Comp Physiol. 2010 Jun;298(6):R1615-26. doi: 10.1152/ajpregu.00114.2010. Epub 2010 Apr 7.


A newly classified vertebrate calpain protease, directly ancestral to CAPN1 and 2, episodically evolved a restricted physiological function in placental mammals.

Macqueen DJ, Delbridge ML, Manthri S, Johnston IA.

Mol Biol Evol. 2010 Aug;27(8):1886-902. doi: 10.1093/molbev/msq071. Epub 2010 Mar 11.


Characterisation of capn1, capn2-like, capn3 and capn11 genes in Atlantic halibut (Hippoglossus hippoglossus L.): Transcriptional regulation across tissues and in skeletal muscle at distinct nutritional states.

Macqueen DJ, Meischke L, Manthri S, Anwar A, Solberg C, Johnston IA.

Gene. 2010 Mar 15;453(1-2):45-58. doi: 10.1016/j.gene.2010.01.002. Epub 2010 Jan 20.


Gene expression analyses of essential catch factors in the smooth and striated adductor muscles of larval, juvenile and adult great scallop (Pecten maximus).

Andersen Ø, Torgersen JS, Pagander HH, Magnesen T, Johnston IA.

J Muscle Res Cell Motil. 2009;30(5-6):233-42. doi: 10.1007/s10974-009-9192-y. Epub 2009 Nov 27.


Phasing of muscle gene expression with fasting-induced recovery growth in Atlantic salmon.

Bower NI, Taylor RG, Johnston IA.

Front Zool. 2009 Aug 24;6:18. doi: 10.1186/1742-9994-6-18.


Selection of reference genes for expression studies with fish myogenic cell cultures.

Bower NI, Johnston IA.

BMC Mol Biol. 2009 Aug 10;10:80. doi: 10.1186/1471-2199-10-80.


Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome-wide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes.

Johnston IA, Lee HT, Macqueen DJ, Paranthaman K, Kawashima C, Anwar A, Kinghorn JR, Dalmay T.

J Exp Biol. 2009 Jun;212(Pt 12):1781-93. doi: 10.1242/jeb.029918.


Evolution of the multifaceted eukaryotic akirin gene family.

Macqueen DJ, Johnston IA.

BMC Evol Biol. 2009 Feb 6;9:34. doi: 10.1186/1471-2148-9-34.


Switching to fast growth: the insulin-like growth factor (IGF) system in skeletal muscle of Atlantic salmon.

Bower NI, Li X, Taylor R, Johnston IA.

J Exp Biol. 2008 Dec;211(Pt 24):3859-70. doi: 10.1242/jeb.024117.


Expression of growth-related genes in muscle during fasting and refeeding of juvenile Atlantic halibut, Hippoglossus hippoglossus L.

Hagen Ø, Fernandes JM, Solberg C, Johnston IA.

Comp Biochem Physiol B Biochem Mol Biol. 2009 Jan;152(1):47-53. doi: 10.1016/j.cbpb.2008.09.083. Epub 2008 Sep 18.


Antarctic genomics.

Clark MS, Clarke A, Cockell CS, Convey P, Detrich HW 3rd, Fraser KP, Johnston IA, Methe BA, Murray AE, Peck LS, Römisch K, Rogers AD.

Comp Funct Genomics. 2004;5(3):230-8. doi: 10.1002/cfg.398.


Temperature until the 'eyed stage' of embryogenesis programmes the growth trajectory and muscle phenotype of adult Atlantic salmon.

Macqueen DJ, Robb DH, Olsen T, Melstveit L, Paxton CG, Johnston IA.

Biol Lett. 2008 Jun 23;4(3):294-8. doi: 10.1098/rsbl.2007.0620.

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