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Items: 13

1.

Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation.

Avolio R, Järvelin AI, Mohammed S, Agliarulo I, Condelli V, Zoppoli P, Calice G, Sarnataro D, Bechara E, Tartaglia GG, Landriscina M, Castello A, Esposito F, Matassa DS.

Nucleic Acids Res. 2018 Sep 27. doi: 10.1093/nar/gky873. [Epub ahead of print]

PMID:
30260431
2.

Unconventional RNA-binding proteins step into the virus-host battlefront.

Garcia-Moreno M, Järvelin AI, Castello A.

Wiley Interdiscip Rev RNA. 2018 Nov;9(6):e1498. doi: 10.1002/wrna.1498. Epub 2018 Aug 9. Review.

PMID:
30091184
3.

Expanding horizons: new roles for non-canonical RNA-binding proteins in cancer.

Moore S, Järvelin AI, Davis I, Bond GL, Castello A.

Curr Opin Genet Dev. 2018 Feb;48:112-120. doi: 10.1016/j.gde.2017.11.006. Epub 2017 Dec 5. Review.

4.

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap.

Castello A, Frese CK, Fischer B, Järvelin AI, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW.

Nat Protoc. 2017 Dec;12(12):2447-2464. doi: 10.1038/nprot.2017.106. Epub 2017 Nov 2.

PMID:
29095441
5.

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters.

Chen Y, Pai AA, Herudek J, Lubas M, Meola N, Järvelin AI, Andersson R, Pelechano V, Steinmetz LM, Jensen TH, Sandelin A.

Nat Genet. 2016 Sep;48(9):984-94. doi: 10.1038/ng.3616. Epub 2016 Jul 25.

6.

The new (dis)order in RNA regulation.

Järvelin AI, Noerenberg M, Davis I, Castello A.

Cell Commun Signal. 2016 Apr 6;14:9. doi: 10.1186/s12964-016-0132-3. Review.

7.

Single-cell polyadenylation site mapping reveals 3' isoform choice variability.

Velten L, Anders S, Pekowska A, Järvelin AI, Huber W, Pelechano V, Steinmetz LM.

Mol Syst Biol. 2015 Jun 3;11(6):812. doi: 10.15252/msb.20156198.

8.

Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions.

Gupta I, Clauder-Münster S, Klaus B, Järvelin AI, Aiyar RS, Benes V, Wilkening S, Huber W, Pelechano V, Steinmetz LM.

Mol Syst Biol. 2014 Feb 25;10:719. doi: 10.1002/msb.135068. Print 2014.

9.

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.

Ntini E, Järvelin AI, Bornholdt J, Chen Y, Boyd M, Jørgensen M, Andersson R, Hoof I, Schein A, Andersen PR, Andersen PK, Preker P, Valen E, Zhao X, Pelechano V, Steinmetz LM, Sandelin A, Jensen TH.

Nat Struct Mol Biol. 2013 Aug;20(8):923-8. doi: 10.1038/nsmb.2640. Epub 2013 Jul 14.

PMID:
23851456
10.

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM.

Nucleic Acids Res. 2013 Mar 1;41(5):e65. doi: 10.1093/nar/gks1249. Epub 2013 Jan 7. Erratum in: Nucleic Acids Res. 2013 Jul;41(12):6370.

11.

Genome-wide polyadenylation site mapping.

Pelechano V, Wilkening S, Järvelin AI, Tekkedil MM, Steinmetz LM.

Methods Enzymol. 2012;513:271-96. doi: 10.1016/B978-0-12-391938-0.00012-4.

PMID:
22929774
12.

Assessment of metagenomic assembly using simulated next generation sequencing data.

Mende DR, Waller AS, Sunagawa S, Järvelin AI, Chan MM, Arumugam M, Raes J, Bork P.

PLoS One. 2012;7(2):e31386. doi: 10.1371/journal.pone.0031386. Epub 2012 Feb 23. Erratum in: PLoS One. 2014;9(11):e114063.

13.

Functional consequences of bidirectional promoters.

Wei W, Pelechano V, Järvelin AI, Steinmetz LM.

Trends Genet. 2011 Jul;27(7):267-76. doi: 10.1016/j.tig.2011.04.002. Epub 2011 May 24. Review.

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