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Items: 1 to 50 of 125

1.

Cardiac Fibroma with Ventricular Tachycardia: An Unusual Clinical Presentation of Nevoid Basal Cell Carcinoma Syndrome.

Ritter AL, Granquist EJ, Iyer VR, Izumi K.

Mol Syndromol. 2018 Jul;9(4):219-223. doi: 10.1159/000489056. Epub 2018 May 19.

2.

Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.

Coudray A, Battenhouse AM, Bucher P, Iyer VR.

PeerJ. 2018 Jul 31;6:e5362. doi: 10.7717/peerj.5362. eCollection 2018.

3.

Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies.

Shivram H, Iyer VR.

RNA. 2018 Sep;24(9):1266-1274. doi: 10.1261/rna.066217.118. Epub 2018 Jun 27.

PMID:
29950518
4.

Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.

Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.

Cancer Res. 2018 May 15;78(10):2463-2474. doi: 10.1158/0008-5472.CAN-17-1724. Epub 2018 Mar 16.

PMID:
29549165
5.

Revisiting the "Tram-Track" sign.

Nair AG, Iyer VR, Gopinathan I.

Indian J Ophthalmol. 2017 Nov;65(11):1217-1218. doi: 10.4103/ijo.IJO_510_17. No abstract available.

6.

Reproducible imaging features of biologically aggressive gastrointestinal stromal tumors of the small bowel.

Maldonado FJ, Sheedy SP, Iyer VR, Hansel SL, Bruining DH, McCollough CH, Harmsen WS, Barlow JM, Fletcher JG.

Abdom Radiol (NY). 2018 Jul;43(7):1567-1574. doi: 10.1007/s00261-017-1370-6.

PMID:
29110055
7.

Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination.

Lee BS, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker HO, Dekker JD.

Mol Cell Biol. 2017 Dec 13;38(1). pii: e00362-17. doi: 10.1128/MCB.00362-17. Print 2018 Jan 1.

8.

Retraction for Lee et al., "The BCL11A Transcription Factor Directly Activates RAG Gene Expression and V(D)J Recombination".

Lee BS, Dekker JD, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker PW.

Mol Cell Biol. 2017 Oct 13;37(21). pii: e00358-17. doi: 10.1128/MCB.00358-17. Print 2017 Nov 1. No abstract available.

9.
10.

Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis.

Wang L, Zhang F, Rode S, Chin KK, Ko EE, Kim J, Iyer VR, Qiao H.

BMC Genomics. 2017 Jul 17;18(1):538. doi: 10.1186/s12864-017-3929-6.

12.

Utility of coronal contrast-enhanced fat-suppressed FLAIR in the evaluation of optic neuropathy and atrophy.

Boegel KH, Tyan AE, Iyer VR, Rykken JB, McKinney AM.

Eur J Radiol Open. 2017 Feb 28;4:13-18. doi: 10.1016/j.ejro.2017.02.002. eCollection 2017.

13.

Increased mitochondrial nanotunneling activity, induced by calcium imbalance, affects intermitochondrial matrix exchanges.

Lavorato M, Iyer VR, Dewight W, Cupo RR, Debattisti V, Gomez L, De la Fuente S, Zhao YT, Valdivia HH, Hajnóczky G, Franzini-Armstrong C.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E849-E858. doi: 10.1073/pnas.1617788113. Epub 2017 Jan 17.

14.

Synthetic evolutionary origin of a proofreading reverse transcriptase.

Ellefson JW, Gollihar J, Shroff R, Shivram H, Iyer VR, Ellington AD.

Science. 2016 Jun 24;352(6293):1590-3. doi: 10.1126/science.aaf5409.

PMID:
27339990
15.

Innovative cardiopulmonary resuscitation and automated external defibrillator programs in schools: Results from the Student Program for Olympic Resuscitation Training in Schools (SPORTS) study.

Vetter VL, Haley DM, Dugan NP, Iyer VR, Shults J.

Resuscitation. 2016 Jul;104:46-52. doi: 10.1016/j.resuscitation.2016.04.010. Epub 2016 Apr 27.

PMID:
27131845
16.

The Determinants of Directionality in Transcriptional Initiation.

Bagchi DN, Iyer VR.

Trends Genet. 2016 Jun;32(6):322-333. doi: 10.1016/j.tig.2016.03.005. Epub 2016 Apr 7. Review.

17.

Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer.

Zhang D, Park D, Zhong Y, Lu Y, Rycaj K, Gong S, Chen X, Liu X, Chao HP, Whitney P, Calhoun-Davis T, Takata Y, Shen J, Iyer VR, Tang DG.

Nat Commun. 2016 Feb 29;7:10798. doi: 10.1038/ncomms10798.

18.

Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.

Srivastava SK, Iyer VR, Ghosh T, Lambadi PR, Pathania R, Navani NK.

Nucleic Acids Res. 2016 Mar 18;44(5):2451-61. doi: 10.1093/nar/gkw029. Epub 2016 Feb 2.

19.

Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1.

Dekker JD, Park D, Shaffer AL 3rd, Kohlhammer H, Deng W, Lee BK, Ippolito GC, Georgiou G, Iyer VR, Staudt LM, Tucker HO.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):E577-86. doi: 10.1073/pnas.1524677113. Epub 2016 Jan 19.

20.

Novel association of polymorphic genetic variants with predictors of outcome of catheter ablation in atrial fibrillation: new directions from a prospective study (DECAF).

Mohanty S, Hall AW, Mohanty P, Prakash S, Trivedi C, Di Biase L, Santangeli P, Bai R, Burkhardt JD, Gallinghouse GJ, Horton R, Sanchez JE, Hranitzky PM, Al-Ahmad A, Iyer VR, Natale A.

J Interv Card Electrophysiol. 2016 Jan;45(1):7-17.

PMID:
26497660
21.

MiR-191 Regulates Primary Human Fibroblast Proliferation and Directly Targets Multiple Oncogenes.

Polioudakis D, Abell NS, Iyer VR.

PLoS One. 2015 May 20;10(5):e0126535. doi: 10.1371/journal.pone.0126535. eCollection 2015.

22.

Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

Ding Z, Ni Y, Timmer SW, Lee BK, Battenhouse A, Louzada S, Yang F, Dunham I, Crawford GE, Lieb JD, Durbin R, Iyer VR, Birney E.

PLoS Genet. 2015 Apr 28;11(4):e1005177. doi: 10.1371/journal.pgen.1005177. eCollection 2015 Apr.

23.

Cardiovascular deaths in children: general overview from the National Center for the Review and Prevention of Child Deaths.

Vetter VL, Covington TM, Dugan NP, Haley DM, Dykstra H, Overpeck M, Iyer VR, Shults J.

Am Heart J. 2015 Mar;169(3):426-437.e23. doi: 10.1016/j.ahj.2014.11.014. Epub 2014 Dec 10.

PMID:
25728734
24.

Dyad content is reduced in cardiac myocytes of mice with impaired calmodulin regulation of RyR2.

Lavorato M, Huang TQ, Iyer VR, Perni S, Meissner G, Franzini-Armstrong C.

J Muscle Res Cell Motil. 2015 Apr;36(2):205-14. doi: 10.1007/s10974-015-9405-5. Epub 2015 Feb 19.

PMID:
25694159
25.

miR-503 represses human cell proliferation and directly targets the oncogene DDHD2 by non-canonical target pairing.

Polioudakis D, Abell NS, Iyer VR.

BMC Genomics. 2015 Feb 5;16:40. doi: 10.1186/s12864-015-1279-9.

26.

IgG4-related disease: an unusual cause of renal 'masses'.

Iyer VR, Taylor AJ.

Nephrology (Carlton). 2015 Jan;20(1):46-7. doi: 10.1111/nep.12345. No abstract available.

PMID:
25535869
27.

Retrospective cohort study of portacaval lymphadenopathy identified on multidetector CT and implications for follow-up.

Iyer VR, Hedgire SS, Hoskote SS, Borczuk D, Harisinghani MG.

Abdom Imaging. 2015 Aug;40(6):1481-6. doi: 10.1007/s00261-014-0328-1.

PMID:
25516214
28.

Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

Ding Z, Ni Y, Timmer SW, Lee BK, Battenhouse A, Louzada S, Yang F, Dunham I, Crawford GE, Lieb JD, Durbin R, Iyer VR, Birney E.

PLoS Genet. 2014 Nov 20;10(11):e1004798. doi: 10.1371/journal.pgen.1004798. eCollection 2014 Nov. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005177.

29.

Chd1 co-localizes with early transcription elongation factors independently of H3K36 methylation and releases stalled RNA polymerase II at introns.

Park D, Shivram H, Iyer VR.

Epigenetics Chromatin. 2014 Oct 27;7(1):32. doi: 10.1186/1756-8935-7-32. eCollection 2014.

30.

Global transcriptional profiling reveals distinct functions of thymic stromal subsets and age-related changes during thymic involution.

Ki S, Park D, Selden HJ, Seita J, Chung H, Kim J, Iyer VR, Ehrlich LIR.

Cell Rep. 2014 Oct 9;9(1):402-415. doi: 10.1016/j.celrep.2014.08.070. Epub 2014 Oct 2.

31.

Development of a data set of national cardiovascular deaths in the young.

Vetter VL, Dugan NP, Haley DM, Covington TM, Dykstra H, Overpeck M, Iyer VR, Shults J.

Am Heart J. 2014 Oct;168(4):568-576.e3. doi: 10.1016/j.ahj.2014.06.015. Epub 2014 Jun 30.

PMID:
25262268
32.

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.

Wortham M, Guo C, Zhang M, Song L, Lee BK, Iyer VR, Furey TS, Crawford GE, Yan H, He Y.

PLoS One. 2014 Sep 8;9(9):e107156. doi: 10.1371/journal.pone.0107156. eCollection 2014.

33.

Overexpression of junctophilin-2 does not enhance baseline function but attenuates heart failure development after cardiac stress.

Guo A, Zhang X, Iyer VR, Chen B, Zhang C, Kutschke WJ, Weiss RM, Franzini-Armstrong C, Song LS.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12240-5. doi: 10.1073/pnas.1412729111. Epub 2014 Aug 4.

34.

Optic nerve glioma: an update.

Nair AG, Pathak RS, Iyer VR, Gandhi RA.

Int Ophthalmol. 2014 Aug;34(4):999-1005. doi: 10.1007/s10792-014-9942-8. Epub 2014 Apr 16. Review.

PMID:
24736941
35.

Prevalence of electrocardiogram use in infants with apparent life-threatening events: a multicenter database study.

Elias MD, Iyer VR, Cohen MS.

Pediatr Emerg Care. 2014 Apr;30(4):236-9. doi: 10.1097/PEC.0000000000000103.

PMID:
24651217
36.

An eQTL analysis of the human glioblastoma multiforme genome.

Shpak M, Hall AW, Goldberg MM, Derryberry DZ, Ni Y, Iyer VR, Cowperthwaite MC.

Genomics. 2014 Apr;103(4):252-63. doi: 10.1016/j.ygeno.2014.02.005. Epub 2014 Mar 4.

37.

Dendritic cell fate is determined by BCL11A.

Ippolito GC, Dekker JD, Wang YH, Lee BK, Shaffer AL 3rd, Lin J, Wall JK, Lee BS, Staudt LM, Liu YJ, Iyer VR, Tucker HO.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):E998-1006. doi: 10.1073/pnas.1319228111. Epub 2014 Mar 3.

38.

Bright/Arid3A acts as a barrier to somatic cell reprogramming through direct regulation of Oct4, Sox2, and Nanog.

Popowski M, Templeton TD, Lee BK, Rhee C, Li H, Miner C, Dekker JD, Orlanski S, Bergman Y, Iyer VR, Webb CF, Tucker H.

Stem Cell Reports. 2014 Jan 14;2(1):26-35. doi: 10.1016/j.stemcr.2013.12.002. eCollection 2014 Jan 14.

39.

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements.

Park D, Morris AR, Battenhouse A, Iyer VR.

Nucleic Acids Res. 2014 Apr;42(6):3736-49. doi: 10.1093/nar/gkt1366. Epub 2014 Jan 10.

40.

Widespread misinterpretable ChIP-seq bias in yeast.

Park D, Lee Y, Bhupindersingh G, Iyer VR.

PLoS One. 2013 Dec 9;8(12):e83506. doi: 10.1371/journal.pone.0083506. eCollection 2013.

41.

Abnormal calcium cycling and cardiac arrhythmias associated with the human Ser96Ala genetic variant of histidine-rich calcium-binding protein.

Singh VP, Rubinstein J, Arvanitis DA, Ren X, Gao X, Haghighi K, Gilbert M, Iyer VR, Kim DH, Cho C, Jones K, Lorenz JN, Armstrong CF, Wang HS, Gyorke S, Kranias EG.

J Am Heart Assoc. 2013 Oct 14;2(5):e000460. doi: 10.1161/JAHA.113.000460.

42.

Arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC/D).

Iyer VR, Chin AJ.

Am J Med Genet C Semin Med Genet. 2013 Aug;163C(3):185-97. doi: 10.1002/ajmg.c.31368. Epub 2013 Jul 3. Review.

PMID:
23824749
43.

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.

Mohr S, Ghanem E, Smith W, Sheeter D, Qin Y, King O, Polioudakis D, Iyer VR, Hunicke-Smith S, Swamy S, Kuersten S, Lambowitz AM.

RNA. 2013 Jul;19(7):958-70. doi: 10.1261/rna.039743.113. Epub 2013 May 22.

44.

The BCL11A transcription factor directly activates RAG gene expression and V(D)J recombination.

Lee BS, Dekker JD, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker PW.

Mol Cell Biol. 2013 May;33(9):1768-81. doi: 10.1128/MCB.00987-12. Epub 2013 Feb 25. Retraction in: Mol Cell Biol. 2017 Oct 13;37(21):null. Erratum in: Mol Cell Biol. 2017 Dec 13;38(1):. Corrected and republished in: Mol Cell Biol. 2017 Oct 16;:null.

45.

A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes.

Polioudakis D, Bhinge AA, Killion PJ, Lee BK, Abell NS, Iyer VR.

Nucleic Acids Res. 2013 Feb 1;41(4):2239-54. doi: 10.1093/nar/gks1452. Epub 2013 Jan 8.

46.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M.

Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111.

47.

The accessible chromatin landscape of the human genome.

Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232.

48.

Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation.

Lee BK, Iyer VR.

J Biol Chem. 2012 Sep 7;287(37):30906-13. doi: 10.1074/jbc.R111.324962. Epub 2012 Sep 5. Review.

49.

Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data.

Ni Y, Hall AW, Battenhouse A, Iyer VR.

BMC Genet. 2012 Sep 5;13:46. doi: 10.1186/1471-2156-13-46.

50.

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE.

PLoS Genet. 2012 Jun;8(6):e1002789. doi: 10.1371/journal.pgen.1002789. Epub 2012 Jun 28.

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