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XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data.

Kluin RJC, Kemper K, Kuilman T, de Ruiter JR, Iyer V, Forment JV, Cornelissen-Steijger P, de Rink I, Ter Brugge P, Song JY, Klarenbeek S, McDermott U, Jonkers J, Velds A, Adams DJ, Peeper DS, Krijgsman O.

BMC Bioinformatics. 2018 Oct 4;19(1):366. doi: 10.1186/s12859-018-2353-5.


Brain permeant and impermeant inhibitors of fatty-acid amide hydrolase synergize with the opioid analgesic morphine to suppress chemotherapy-induced neuropathic nociception without enhancing effects of morphine on gastrointestinal transit.

Slivicki RA, Saberi SA, Iyer V, Vemuri K, Makriyannis A, Hohmann AG.

J Pharmacol Exp Ther. 2018 Oct 1. pii: jpet.118.252288. doi: 10.1124/jpet.118.252288. [Epub ahead of print]


Cytopathology of Solid Variant of Papillary Thyroid Carcinoma: Differential Diagnoses with other Thyroid Tumors.

Guleria P, Phulware R, Agarwal S, Jain D, Mathur SR, Iyer VK, Ballal S, Bal CS.

Acta Cytol. 2018 Sep 25:1-9. doi: 10.1159/000493081. [Epub ahead of print]


Z-score maps from low-dose 18F-FDG PET of the brain in neurodegenerative dementia.

Fällmar D, Lilja J, Danfors T, Kilander L, Iyer V, Lubberink M, Larsson EM, Sörensen J.

Am J Nucl Med Mol Imaging. 2018 Aug 20;8(4):239-246. eCollection 2018.


Left atrial hemodynamics and left ventricular remodeling -predictors of outcomes after Transcatheter mitral valve repair with the MitraClip device.

Lazkani M, Sawant AC, Taase A, Khan S, Fang K, Iyer V, Pershad A.

Catheter Cardiovasc Interv. 2018 Sep 23:e27804. doi: 10.1002/ccd.27804. [Epub ahead of print]


A lentiviral vector-based insertional mutagenesis screen identifies mechanisms of resistance to MAPK inhibitors in melanoma.

Ranzani M, Alifrangis C, Thompson NA, Rust AG, Allahyar A, Iyer V, Price S, Ellis P, Turner G, de Ridder J, McDermott U, Adams DJ.

Pigment Cell Melanoma Res. 2018 Sep 15. doi: 10.1111/pcmr.12737. [Epub ahead of print]


Quality of life outcomes in transcatheter aortic valve replacement patients requiring pacemaker implantation.

Bhardwaj A, Ramanan T, Sawant AC, Sinibaldi E, Pham M, Khan S, Qureshi R, Agrawal N, Khalil C, Hansen R, Baldo S, Colern G, Corbelli J, Pershad A, Beck H, Iyer V.

J Arrhythm. 2018 Jun 12;34(4):441-449. doi: 10.1002/joa3.12065. eCollection 2018 Aug.


Cardiac Fibroma with Ventricular Tachycardia: An Unusual Clinical Presentation of Nevoid Basal Cell Carcinoma Syndrome.

Ritter AL, Granquist EJ, Iyer VR, Izumi K.

Mol Syndromol. 2018 Jul;9(4):219-223. doi: 10.1159/000489056. Epub 2018 May 19.


Discovery of Asciminib (ABL001), an Allosteric Inhibitor of the Tyrosine Kinase Activity of BCR-ABL1.

Schoepfer J, Jahnke W, Berellini G, Buonamici S, Cotesta S, Cowan-Jacob SW, Dodd S, Drueckes P, Fabbro D, Gabriel T, Groell JM, Grotzfeld RM, Hassan AQ, Henry C, Iyer V, Jones D, Lombardo F, Loo A, Manley PW, Pellé X, Rummel G, Salem B, Warmuth M, Wylie AA, Zoller T, Marzinzik AL, Furet P.

J Med Chem. 2018 Sep 27;61(18):8120-8135. doi: 10.1021/acs.jmedchem.8b01040. Epub 2018 Sep 7.


Disorganized Patterns of Sulcal Position in Fetal Brains with Agenesis of Corpus Callosum.

Tarui T, Madan N, Farhat N, Kitano R, Ceren Tanritanir A, Graham G, Gagoski B, Craig A, Rollins CK, Ortinau C, Iyer V, Pienaar R, Bianchi DW, Grant PE, Im K.

Cereb Cortex. 2018 Sep 1;28(9):3192-3203. doi: 10.1093/cercor/bhx191.


First Dark Matter Constraints from a SuperCDMS Single-Charge Sensitive Detector.

Agnese R, Aralis T, Aramaki T, Arnquist IJ, Azadbakht E, Baker W, Banik S, Barker D, Bauer DA, Binder T, Bowles MA, Brink PL, Bunker R, Cabrera B, Calkins R, Cartaro C, Cerdeño DG, Chang YY, Cooley J, Cornell B, Cushman P, Di Stefano PCF, Doughty T, Fascione E, Figueroa-Feliciano E, Fink C, Fritts M, Gerbier G, Germond R, Ghaith M, Golwala SR, Harris HR, Hong Z, Hoppe EW, Hsu L, Huber ME, Iyer V, Jardin D, Jena C, Kelsey MH, Kennedy A, Kubik A, Kurinsky NA, Lawrence RE, Leyva JV, Loer B, Lopez Asamar E, Lukens P, MacDonell D, Mahapatra R, Mandic V, Mast N, Miller EH, Mirabolfathi N, Mohanty B, Morales Mendoza JD, Nelson J, Orrell JL, Oser SM, Page WA, Partridge R, Pepin M, Phipps A, Ponce F, Poudel S, Pyle M, Qiu H, Rau W, Reisetter A, Reynolds T, Roberts A, Robinson AE, Rogers HE, Romani RK, Saab T, Sadoulet B, Sander J, Scarff A, Schnee RW, Scorza S, Senapati K, Serfass B, So J, Speller D, Stanford C, Stein M, Street J, Tanaka HA, Toback D, Underwood R, Villano AN, von Krosigk B, Watkins SL, Wilson JS, Wilson MJ, Winchell J, Wright DH, Yellin S, Young BA, Zhang X, Zhao X.

Phys Rev Lett. 2018 Aug 3;121(5):051301. doi: 10.1103/PhysRevLett.121.051301.


Ultraparamagnetic Cells Formed through Intracellular Oxidation and Chelation of Paramagnetic Iron.

Ramesh P, Hwang SJ, Davis HC, Lee-Gosselin A, Bharadwaj V, English MA, Sheng J, Iyer V, Shapiro MG.

Angew Chem Int Ed Engl. 2018 Sep 17;57(38):12385-12389. doi: 10.1002/anie.201805042. Epub 2018 Aug 28.


Ultrafast Surface State Spin-Carrier Dynamics in the Topological Insulator Bi_{2}Te_{2}Se.

Iyer V, Chen YP, Xu X.

Phys Rev Lett. 2018 Jul 13;121(2):026807. doi: 10.1103/PhysRevLett.121.026807.


Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.

Coudray A, Battenhouse AM, Bucher P, Iyer VR.

PeerJ. 2018 Jul 31;6:e5362. doi: 10.7717/peerj.5362. eCollection 2018.


Characterization and phase I study of CLR457, an orally bioavailable pan-class I PI3-kinase inhibitor.

Harding JJ, Bauer TM, Tan DSW, Bedard PL, Rodon J, Doi T, Schnell C, Iyer V, Baffert F, Radhakrishnan R, Fabre C, Juric D.

Invest New Drugs. 2018 Aug 3. doi: 10.1007/s10637-018-0627-4. [Epub ahead of print]


Real-time optical spectroscopic monitoring of non-irrigated lesion progression within atrial and ventricular tissues.

Singh-Moon RP, Yao X, Iyer V, Marboe C, Whang W, Hendon CP.

J Biophotonics. 2018 Jul 30:e201800144. doi: 10.1002/jbio.201800144. [Epub ahead of print]


Poor Relationship Between Fractionated Exhaled Nitric Oxide and Disease Activity in Eosinophilic Esophagitis.

Johnson K, Iyer V, Katzka D, Ravi K, Lennon R, Pendegraft R, Geno D, Alexander J.

Dysphagia. 2018 Jul 24. doi: 10.1007/s00455-018-9925-4. [Epub ahead of print]


The Frequency of Focal Thyroid Incidental Findings and Risk of Malignancy Detected by 18F-Fluorodeoxyglucose Positron Emission Tomography in an Iodine Deficient Population.

Gedberg N, Karmisholt J, Gade M, Fisker RV, Iyer V, Petersen LJ.

Diagnostics (Basel). 2018 Jul 17;8(3). pii: E46. doi: 10.3390/diagnostics8030046.


No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice.

Iyer V, Boroviak K, Thomas M, Doe B, Riva L, Ryder E, Adams DJ.

PLoS Genet. 2018 Jul 9;14(7):e1007503. doi: 10.1371/journal.pgen.1007503. eCollection 2018 Jul.


Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies.

Shivram H, Iyer VR.

RNA. 2018 Sep;24(9):1266-1274. doi: 10.1261/rna.066217.118. Epub 2018 Jun 27.


Programmed death-ligand 1 immunoexpression in matched biopsy and liquid-based cytology samples of advanced stage non-small cell lung carcinomas.

Jain D, Sukumar S, Mohan A, Iyer VK.

Cytopathology. 2018 Jun 25. doi: 10.1111/cyt.12605. [Epub ahead of print]


Troponin Release and Reversible Left Ventricular Dysfunction After Transient Pressure Overload.

Weil BR, Suzuki G, Young RF, Iyer V, Canty JM Jr.

J Am Coll Cardiol. 2018 Jun 26;71(25):2906-2916. doi: 10.1016/j.jacc.2018.04.029.


3D Printed Cardiovascular Patient Specific Phantoms Used for Clinical Validation of a CT-derived FFR Diagnostic Software.

Sommer KN, Shepard L, Karkhanis NV, Iyer V, Angel E, Wilson MF, Rybicki FJ, Mitsouras D, Rudin S, Ionita CN.

Proc SPIE Int Soc Opt Eng. 2018 Feb;10578. pii: 105780J. doi: 10.1117/12.2292736. Epub 2018 Mar 12.


Effect of 2 Emulsion-Based Adjuvants on the Structure and Thermal Stability of Staphylococcus aureus Alpha-Toxin.

Wei Y, Xiong J, Larson NR, Iyer V, Sanyal G, Joshi SB, Volkin DB, Middaugh CR.

J Pharm Sci. 2018 Sep;107(9):2325-2334. doi: 10.1016/j.xphs.2018.05.019. Epub 2018 Jun 6.


A Rare Case of Metastasis to the Thyroid Gland from Renal Clear Cell Carcinoma 11 Years after Nephrectomy and Concurrent Primary Esophageal Carcinoma.

Khan MS, Iyer VB, Varshney N.

Case Rep Oncol Med. 2018 Apr 2;2018:3790106. doi: 10.1155/2018/3790106. eCollection 2018.


Endobronchial ultrasound guided transbronchial needle aspirate from subcarinal lymph node: Mesothelial lesion, a diagnostic dilemma.

Nakra T, Jain D, Madan K, Mallick S, Mathur SR, Iyer VK, Ramteke P.

Cytopathology. 2018 Oct;29(5):486-488. doi: 10.1111/cyt.12547. Epub 2018 May 24. No abstract available.


Replay of Episodic Memories in the Rat.

Panoz-Brown D, Iyer V, Carey LM, Sluka CM, Rajic G, Kestenman J, Gentry M, Brotheridge S, Somekh I, Corbin HE, Tucker KG, Almeida B, Hex SB, Garcia KD, Hohmann AG, Crystal JD.

Curr Biol. 2018 May 21;28(10):1628-1634.e7. doi: 10.1016/j.cub.2018.04.006. Epub 2018 May 10.


UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs.

Gozdecka M, Meduri E, Mazan M, Tzelepis K, Dudek M, Knights AJ, Pardo M, Yu L, Choudhary JS, Metzakopian E, Iyer V, Yun H, Park N, Varela I, Bautista R, Collord G, Dovey O, Garyfallos DA, De Braekeleer E, Kondo S, Cooper J, Göttgens B, Bullinger L, Northcott PA, Adams D, Vassiliou GS, Huntly BJP.

Nat Genet. 2018 Jun;50(6):883-894. doi: 10.1038/s41588-018-0114-z. Epub 2018 May 7.


Acute cauda equina syndrome following orthopedic procedures as a result of epidural anesthesia.

Shields LBE, Iyer VG, Zhang YP, Shields CB.

Surg Neurol Int. 2018 Apr 10;9:81. doi: 10.4103/sni.sni_492_17. eCollection 2018.


1-Year Outcomes of Transcatheter Mitral Valve Replacement in Patients With Severe Mitral Annular Calcification.

Guerrero M, Urena M, Himbert D, Wang DD, Eleid M, Kodali S, George I, Chakravarty T, Mathur M, Holzhey D, Pershad A, Fang HK, O'Hair D, Jones N, Mahadevan VS, Dumonteil N, Rodés-Cabau J, Piazza N, Ferrari E, Ciaburri D, Nejjari M, DeLago A, Sorajja P, Zahr F, Rajagopal V, Whisenant B, Shah PB, Sinning JM, Witkowski A, Eltchaninoff H, Dvir D, Martin B, Attizzani GF, Gaia D, Nunes NSV, Fassa AA, Kerendi F, Pavlides G, Iyer V, Kaddissi G, Witzke C, Wudel J, Mishkel G, Raybuck B, Wang C, Waksman R, Palacios I, Cribier A, Webb J, Bapat V, Reisman M, Makkar R, Leon M, Rihal C, Vahanian A, O'Neill W, Feldman T.

J Am Coll Cardiol. 2018 May 1;71(17):1841-1853. doi: 10.1016/j.jacc.2018.02.054.


Extracorporeal Photopheresis Improves Survival in Hematopoietic Cell Transplant Patients with Bronchiolitis Obliterans Syndrome without Significantly Impacting Measured Pulmonary Functions.

Hefazi M, Langer KJ, Khera N, Adamski J, Roy V, Winters JL, Gastineau DA, Jacob EK, Kreuter JD, Gandhi MJ, Hogan WJ, Litzow MR, Hashmi SK, Yadav H, Iyer VN, Scott JP, Wylam ME, Cartin-Ceba R, Patnaik MM.

Biol Blood Marrow Transplant. 2018 Sep;24(9):1906-1913. doi: 10.1016/j.bbmt.2018.04.012. Epub 2018 Apr 18.


Effects of increased accumulation of doxorubicin due to emodin on efflux transporter and LRP1 expression in lung adenocarcinoma and colorectal carcinoma cells.

Iyer VV, Priya PY, Kangeyavelu J.

Mol Cell Biochem. 2018 Apr 11. doi: 10.1007/s11010-018-3346-4. [Epub ahead of print]


Comparison of Conventional Smear and Liquid-based Cytology Preparation in Diagnosis of Lung Cancer by Bronchial Wash and Transbronchial Needle Aspiration.

Nalwa A, Walia R, Singh V, Madan K, Mathur S, Iyer V, Jain D.

J Cytol. 2018 Apr-Jun;35(2):94-98. doi: 10.4103/JOC.JOC_248_16.


Cytopathology of non-invasive follicular thyroid neoplasm with papillary-like nuclear features: A comparative study with similar patterned papillary thyroid carcinoma variants.

Mahajan S, Agarwal S, Kocheri N, Jain D, Mathur SR, Iyer VK.

Cytopathology. 2018 Jun;29(3):233-240. doi: 10.1111/cyt.12537. Epub 2018 Apr 11.


Clinical Outcomes of Weight-Based Norepinephrine Dosing in Underweight and Morbidly Obese Patients: A Propensity-Matched Analysis.

Kotecha AA, Vallabhajosyula S, Apala DR, Frazee E, Iyer VN.

J Intensive Care Med. 2018 Jan 1:885066618768180. doi: 10.1177/0885066618768180. [Epub ahead of print]


Impact of Age on Outcomes in Hospitalized Patients with Hereditary Hemorrhagic Telangiectasia.

Iyer VN, Brinjikji W, Apala D, Pannu BS, Kotecha A, Leise MD, Kamath PS, Misra S, Lanzino G, Krowka MJ, Wood CP, Swanson KL.

Adv Hematol. 2018 Feb 11;2018:4798425. doi: 10.1155/2018/4798425. eCollection 2018.


Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.

Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.

Cancer Res. 2018 May 15;78(10):2463-2474. doi: 10.1158/0008-5472.CAN-17-1724. Epub 2018 Mar 16.


Rare Variant, Gene-Based Association Study of Hereditary Melanoma Using Whole-Exome Sequencing.

Artomov M, Stratigos AJ, Kim I, Kumar R, Lauss M, Reddy BY, Miao B, Daniela Robles-Espinoza C, Sankar A, Njauw CN, Shannon K, Gragoudas ES, Marie Lane A, Iyer V, Newton-Bishop JA, Timothy Bishop D, Holland EA, Mann GJ, Singh T, Daly MJ, Tsao H.

J Natl Cancer Inst. 2017 Dec 1;109(12). doi: 10.1093/jnci/djx083.


Primary Small Intestinal Angiosarcoma: Epidemiology, Diagnosis and Treatment.

Nai Q, Ansari M, Liu J, Razjouyan H, Pak S, Tian Y, Khan R, Broder A, Bagchi A, Iyer V, Hamouda D, Islam M, Sen S, Yousif A, Hu M, Lou Y, Duhl J.

J Clin Med Res. 2018 Apr;10(4):294-301. doi: 10.14740/jocmr3153w. Epub 2018 Feb 18. Review.


Results from the Super Cryogenic Dark Matter Search Experiment at Soudan.

Agnese R, Aramaki T, Arnquist IJ, Baker W, Balakishiyeva D, Banik S, Barker D, Basu Thakur R, Bauer DA, Binder T, Bowles MA, Brink PL, Bunker R, Cabrera B, Caldwell DO, Calkins R, Cartaro C, Cerdeño DG, Chang Y, Chen Y, Cooley J, Cornell B, Cushman P, Daal M, Di Stefano PCF, Doughty T, Fascione E, Figueroa-Feliciano E, Fritts M, Gerbier G, Germond R, Ghaith M, Godfrey GL, Golwala SR, Hall J, Harris HR, Hong Z, Hoppe EW, Hsu L, Huber ME, Iyer V, Jardin D, Jastram A, Jena C, Kelsey MH, Kennedy A, Kubik A, Kurinsky NA, Loer B, Lopez Asamar E, Lukens P, MacDonell D, Mahapatra R, Mandic V, Mast N, Miller EH, Mirabolfathi N, Mohanty B, Morales Mendoza JD, Nelson J, Orrell JL, Oser SM, Page K, Page WA, Partridge R, Penalver Martinez M, Pepin M, Phipps A, Poudel S, Pyle M, Qiu H, Rau W, Redl P, Reisetter A, Reynolds T, Roberts A, Robinson AE, Rogers HE, Saab T, Sadoulet B, Sander J, Schneck K, Schnee RW, Scorza S, Senapati K, Serfass B, Speller D, Stein M, Street J, Tanaka HA, Toback D, Underwood R, Villano AN, von Krosigk B, Welliver B, Wilson JS, Wilson MJ, Wright DH, Yellin S, Yen JJ, Young BA, Zhang X, Zhao X; SuperCDMS Collaboration.

Phys Rev Lett. 2018 Feb 9;120(6):061802. doi: 10.1103/PhysRevLett.120.061802.


Anaplastic Lymphoma Kinase Immunocytochemistry in Fine Needle Aspiration Diagnosis of Anaplastic Large-cell Lymphoma.

Ramteke P, Chitragar S, Singh A, Mallick S, Mathur SR, Jain D, Iyer VK.

J Cytol. 2018 Jan-Mar;35(1):37-40. doi: 10.4103/JOC.JOC_211_16.


Intravenous Bevacizumab for Refractory Hereditary Hemorrhagic Telangiectasia-Related Epistaxis and Gastrointestinal Bleeding.

Iyer VN, Apala DR, Pannu BS, Kotecha A, Brinjikji W, Leise MD, Kamath PS, Misra S, Begna KH, Cartin-Ceba R, DuBrock HM, Krowka MJ, O'Brien EK, Pruthi RK, Schroeder DR, Swanson KL.

Mayo Clin Proc. 2018 Feb;93(2):155-166. doi: 10.1016/j.mayocp.2017.11.013. Epub 2018 Jan 24. Erratum in: Mayo Clin Proc. 2018 Mar;93(3):396.


Adenocarcinoma predominant pattern subtyping and nuclear grading in cytology: Is there a role in prognostication of advanced pulmonary adenocarcinomas?

Nambirajan A, Kaur H, Jangra K, Kaur K, Madan K, Mathur SR, Iyer VK, Jain D.

Cytopathology. 2018 Apr;29(2):163-171. doi: 10.1111/cyt.12519. Epub 2018 Feb 1.


Exploring current status of Helicobacter pylori infection in different age groups of patients with dyspepsia.

Dutta AK, Reddy VD, Iyer VH, Unnikrishnan LS, Chacko A.

Indian J Gastroenterol. 2017 Nov;36(6):509-513. doi: 10.1007/s12664-017-0810-0. Epub 2018 Jan 24.


Exosomes Associated with Human Ovarian Tumors Harbor a Reversible Checkpoint of T-cell Responses.

Shenoy GN, Loyall J, Maguire O, Iyer V, Kelleher RJ Jr, Minderman H, Wallace PK, Odunsi K, Balu-Iyer SV, Bankert RB.

Cancer Immunol Res. 2018 Feb;6(2):236-247. doi: 10.1158/2326-6066.CIR-17-0113. Epub 2018 Jan 4.


Effect of Mechanically Expanded vs Self-Expanding Transcatheter Aortic Valve Replacement on Mortality and Major Adverse Clinical Events in High-Risk Patients With Aortic Stenosis: The REPRISE III Randomized Clinical Trial.

Feldman TE, Reardon MJ, Rajagopal V, Makkar RR, Bajwa TK, Kleiman NS, Linke A, Kereiakes DJ, Waksman R, Thourani VH, Stoler RC, Mishkel GJ, Rizik DG, Iyer VS, Gleason TG, Tchétché D, Rovin JD, Buchbinder M, Meredith IT, Götberg M, Bjursten H, Meduri C, Salinger MH, Allocco DJ, Dawkins KD.

JAMA. 2018 Jan 2;319(1):27-37. doi: 10.1001/jama.2017.19132.


Low-dose oxygen therapy in COPD patients: are there any radiation-like risks?

Iyer VN.

Curr Opin Pulm Med. 2018 Mar;24(2):187-190. doi: 10.1097/MCP.0000000000000455.


p40 & thyroid transcription factor-1 immunohistochemistry: A useful panel to characterize non-small cell lung carcinoma-not otherwise specified (NSCLC-NOS) category.

Walia R, Jain D, Madan K, Sharma MC, Mathur SR, Mohan A, Iyer VK, Kumar L.

Indian J Med Res. 2017 Jul;146(1):42-48. doi: 10.4103/ijmr.IJMR_1221_15.


Revisiting the "Tram-Track" sign.

Nair AG, Iyer VR, Gopinathan I.

Indian J Ophthalmol. 2017 Nov;65(11):1217-1218. doi: 10.4103/ijo.IJO_510_17. No abstract available.


Reproducible imaging features of biologically aggressive gastrointestinal stromal tumors of the small bowel.

Maldonado FJ, Sheedy SP, Iyer VR, Hansel SL, Bruining DH, McCollough CH, Harmsen WS, Barlow JM, Fletcher JG.

Abdom Radiol (NY). 2018 Jul;43(7):1567-1574. doi: 10.1007/s00261-017-1370-6.


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