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Items: 1 to 50 of 160

1.

Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations.

Maruyama K, Imai H, Kawamura M, Ishino S, Ishino Y, Ito K, Uchiumi T.

Sci Rep. 2019 Oct 14;9(1):14761. doi: 10.1038/s41598-019-51266-x.

2.

Homogeneous sulfur isotope signature in East Antarctica and implication for sulfur source shifts through the last glacial-interglacial cycle.

Ishino S, Hattori S, Savarino J, Legrand M, Albalat E, Albarede F, Preunkert S, Jourdain B, Yoshida N.

Sci Rep. 2019 Aug 27;9(1):12378. doi: 10.1038/s41598-019-48801-1.

3.

Imaging-assisted nanoimmunotherapy for atherosclerosis in multiple species.

Binderup T, Duivenvoorden R, Fay F, van Leent MMT, Malkus J, Baxter S, Ishino S, Zhao Y, Sanchez-Gaytan B, Teunissen AJP, Frederico YCA, Tang J, Carlucci G, Lyashchenko S, Calcagno C, Karakatsanis N, Soultanidis G, Senders ML, Robson PM, Mani V, Ramachandran S, Lobatto ME, Hutten BA, Granada JF, Reiner T, Swirski FK, Nahrendorf M, Kjaer A, Fisher EA, Fayad ZA, Pérez-Medina C, Mulder WJM.

Sci Transl Med. 2019 Aug 21;11(506). pii: eaaw7736. doi: 10.1126/scitranslmed.aaw7736.

PMID:
31434756
4.

Pol B, a Family B DNA Polymerase, in Thermococcus kodakarensis is Important for DNA Repair, but not DNA Replication.

Kushida T, Narumi I, Ishino S, Ishino Y, Fujiwara S, Imanaka T, Higashibata H.

Microbes Environ. 2019 Sep 25;34(3):316-326. doi: 10.1264/jsme2.ME19075. Epub 2019 Jul 27.

5.

Energy requirements for patients in convalescent rehabilitation using motor scores as in the Functional Independent Measure.

Inoue H, Morioka K, Okamoto K, Tsutsumi H, Ishino S, Kiritani N, Kubo H, Nara M, Tsuji Y.

Asia Pac J Clin Nutr. 2019;28(1):31-34. doi: 10.6133/apjcn.201903_28(1).0005.

6.

Mutant KCNJ3 and KCNJ5 Potassium Channels as Novel Molecular Targets in Bradyarrhythmias and Atrial Fibrillation.

Yamada N, Asano Y, Fujita M, Yamazaki S, Inanobe A, Matsuura N, Kobayashi H, Ohno S, Ebana Y, Tsukamoto O, Ishino S, Takuwa A, Kioka H, Yamashita T, Hashimoto N, Zankov DP, Shimizu A, Asakura M, Asanuma H, Kato H, Nishida Y, Miyashita Y, Shinomiya H, Naiki N, Hayashi K, Makiyama T, Ogita H, Miura K, Ueshima H, Komuro I, Yamagishi M, Horie M, Kawakami K, Furukawa T, Koizumi A, Kurachi Y, Sakata Y, Minamino T, Kitakaze M, Takashima S.

Circulation. 2019 Apr 30;139(18):2157-2169. doi: 10.1161/CIRCULATIONAHA.118.036761.

PMID:
30764634
7.

Replication protein A complex in Thermococcus kodakarensis interacts with DNA polymerases and helps their effective strand synthesis.

Nagata M, Ishino S, Yamagami T, Ishino Y.

Biosci Biotechnol Biochem. 2019 Apr;83(4):695-704. doi: 10.1080/09168451.2018.1559722. Epub 2018 Dec 22.

PMID:
30582424
8.

Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase.

Takashima N, Ishino S, Oki K, Takafuji M, Yamagami T, Matsuo R, Mayanagi K, Ishino Y.

Extremophiles. 2019 Jan;23(1):161-172. doi: 10.1007/s00792-018-1070-3. Epub 2018 Nov 30.

PMID:
30506100
9.

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures.

Liu Y, Brandt D, Ishino S, Ishino Y, Koonin EV, Kalinowski J, Krupovic M, Prangishvili D.

Environ Microbiol. 2019 Jun;21(6):2002-2014. doi: 10.1111/1462-2920.14479. Epub 2019 Jan 8.

PMID:
30451355
10.

Direct visualization of DNA baton pass between replication factors bound to PCNA.

Mayanagi K, Ishino S, Shirai T, Oyama T, Kiyonari S, Kohda D, Morikawa K, Ishino Y.

Sci Rep. 2018 Nov 1;8(1):16209. doi: 10.1038/s41598-018-34176-2.

11.

The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG.

Shiraishi M, Ishino S, Heffernan M, Cann I, Ishino Y.

Sci Rep. 2018 Oct 25;8(1):15791. doi: 10.1038/s41598-018-34000-x.

12.

Nanobody-Facilitated Multiparametric PET/MRI Phenotyping of Atherosclerosis.

Senders ML, Hernot S, Carlucci G, van de Voort JC, Fay F, Calcagno C, Tang J, Alaarg A, Zhao Y, Ishino S, Palmisano A, Boeykens G, Meerwaldt AE, Sanchez-Gaytan BL, Baxter S, Zendman L, Lobatto ME, Karakatsanis NA, Robson PM, Broisat A, Raes G, Lewis JS, Tsimikas S, Reiner T, Fayad ZA, Devoogdt N, Mulder WJM, Pérez-Medina C.

JACC Cardiovasc Imaging. 2019 Oct;12(10):2015-2026. doi: 10.1016/j.jcmg.2018.07.027. Epub 2018 Oct 17.

13.

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication.

Ishino S, Skouloubris S, Kudo H, l'Hermitte-Stead C, Es-Sadik A, Lambry JC, Ishino Y, Myllykallio H.

Nucleic Acids Res. 2018 Jul 6;46(12):6206-6217. doi: 10.1093/nar/gky460.

14.
15.

Two Family B DNA Polymerases From Aeropyrum pernix, Based on Revised Translational Frames.

Daimon K, Ishino S, Imai N, Nagumo S, Yamagami T, Matsukawa H, Ishino Y.

Front Mol Biosci. 2018 Apr 16;5:37. doi: 10.3389/fmolb.2018.00037. eCollection 2018.

16.

Inhibitory effect of the Kampo medicinal formula Yokukansan on acute stress-induced defecation in rats.

Kanada Y, Katayama A, Ikemoto H, Takahashi K, Tsukada M, Nakamura A, Ishino S, Hisamitsu T, Sunagawa M.

Neuropsychiatr Dis Treat. 2018 Apr 6;14:937-944. doi: 10.2147/NDT.S156795. eCollection 2018.

17.

Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus.

Miyazono KI, Ishino S, Makita N, Ito T, Ishino Y, Tanokura M.

Nucleic Acids Res. 2018 May 18;46(9):4807-4818. doi: 10.1093/nar/gky261.

18.

Rapid Electron Transfer of Stacked Heterodimers of Perylene Diimide Derivatives in a DNA Duplex.

Takada T, Ishino S, Takata A, Nakamura M, Fujitsuka M, Majima T, Yamana K.

Chemistry. 2018 Jun 7;24(32):8228-8232. doi: 10.1002/chem.201800947. Epub 2018 May 14.

PMID:
29656473
19.

A simple and reliable method reducing sulfate to sulfide for multiple sulfur isotope analysis.

Geng L, Savarino J, Savarino CA, Caillon N, Cartigny P, Hattori S, Ishino S, Yoshida N.

Rapid Commun Mass Spectrom. 2018 Feb 28;32(4):333-341. doi: 10.1002/rcm.8048.

20.

Possible function of the second RecJ-like protein in stalled replication fork repair by interacting with Hef.

Nagata M, Ishino S, Yamagami T, Simons JR, Kanai T, Atomi H, Ishino Y.

Sci Rep. 2017 Dec 5;7(1):16949. doi: 10.1038/s41598-017-17306-0.

21.

The Cdc45/RecJ-like protein forms a complex with GINS and MCM, and is important for DNA replication in Thermococcus kodakarensis.

Nagata M, Ishino S, Yamagami T, Ogino H, Simons JR, Kanai T, Atomi H, Ishino Y.

Nucleic Acids Res. 2017 Oct 13;45(18):10693-10705. doi: 10.1093/nar/gkx740.

22.

Resolving quanta of collective spin excitations in a millimeter-sized ferromagnet.

Lachance-Quirion D, Tabuchi Y, Ishino S, Noguchi A, Ishikawa T, Yamazaki R, Nakamura Y.

Sci Adv. 2017 Jul 5;3(7):e1603150. doi: 10.1126/sciadv.1603150. eCollection 2017 Jul.

23.

A Novel Type of Polyhedral Viruses Infecting Hyperthermophilic Archaea.

Liu Y, Ishino S, Ishino Y, Pehau-Arnaudet G, Krupovic M, Prangishvili D.

J Virol. 2017 Jun 9;91(13). pii: e00589-17. doi: 10.1128/JVI.00589-17. Print 2017 Jul 1.

24.

Glucose uptake of the muscle and adipose tissues in diabetes and obesity disease models: evaluation of insulin and β3-adrenergic receptor agonist effects by 18F-FDG.

Ishino S, Sugita T, Kondo Y, Okai M, Tsuchimori K, Watanabe M, Mori I, Hosoya M, Horiguchi T, Kamiguchi H.

Ann Nucl Med. 2017 Jun;31(5):413-423. doi: 10.1007/s12149-017-1169-0. Epub 2017 Apr 11.

PMID:
28401400
25.

The RecJ2 protein in the thermophilic archaeon Thermoplasma acidophilum is a 3'-5' exonuclease that associates with a DNA replication complex.

Ogino H, Ishino S, Kohda D, Ishino Y.

J Biol Chem. 2017 May 12;292(19):7921-7931. doi: 10.1074/jbc.M116.767921. Epub 2017 Mar 16.

26.

Exonuclease processivity of archaeal replicative DNA polymerase in association with PCNA is expedited by mismatches in DNA.

Yoda T, Tanabe M, Tsuji T, Yoda T, Ishino S, Shirai T, Ishino Y, Takeyama H, Nishida H.

Sci Rep. 2017 Mar 16;7:44582. doi: 10.1038/srep44582.

27.

Hippocampal-prefrontal theta phase synchrony in planning of multi-step actions based on memory retrieval.

Ishino S, Takahashi S, Ogawa M, Sakurai Y.

Eur J Neurosci. 2017 May;45(10):1313-1324. doi: 10.1111/ejn.13547. Epub 2017 Mar 27.

PMID:
28231381
28.

Automated system measuring triple oxygen and nitrogen isotope ratios in nitrate using the bacterial method and N2 O decomposition by microwave discharge.

Hattori S, Savarino J, Kamezaki K, Ishino S, Dyckmans J, Fujinawa T, Caillon N, Barbero A, Mukotaka A, Toyoda S, Well R, Yoshida N.

Rapid Commun Mass Spectrom. 2017 Feb 28;31(4):396. doi: 10.1002/rcm.7800. No abstract available.

PMID:
28116803
29.

A functional endonuclease Q exists in the bacterial domain: identification and characterization of endonuclease Q from Bacillus pumilus.

Shiraishi M, Ishino S, Cann I, Ishino Y.

Biosci Biotechnol Biochem. 2017 May;81(5):931-937. doi: 10.1080/09168451.2016.1277946. Epub 2017 Jan 18.

PMID:
28095753
30.

Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease.

Nakae S, Hijikata A, Tsuji T, Yonezawa K, Kouyama KI, Mayanagi K, Ishino S, Ishino Y, Shirai T.

Structure. 2016 Nov 1;24(11):1960-1971. doi: 10.1016/j.str.2016.09.005. Epub 2016 Oct 20.

31.

Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication.

Oyama T, Ishino S, Shirai T, Yamagami T, Nagata M, Ogino H, Kusunoki M, Ishino Y.

Nucleic Acids Res. 2016 Nov 2;44(19):9505-9517. Epub 2016 Sep 5.

33.

Automated system measuring triple oxygen and nitrogen isotope ratios in nitrate using the bacterial method and N2 O decomposition by microwave discharge.

Hattori S, Savarino J, Kamezaki K, Ishino S, Dyckmans J, Fujinawa T, Caillon N, Barbero A, Mukotaka A, Toyoda S, Well R, Yoshida N.

Rapid Commun Mass Spectrom. 2016 Dec 30;30(24):2635-2644. doi: 10.1002/rcm.7747. Erratum in: Rapid Commun Mass Spectrom. 2017 Feb 28;31(4):396.

PMID:
27676138
34.

DJ-1 family Maillard deglycases prevent acrylamide formation.

Richarme G, Marguet E, Forterre P, Ishino S, Ishino Y.

Biochem Biophys Res Commun. 2016 Sep 23;478(3):1111-6. doi: 10.1016/j.bbrc.2016.08.077. Epub 2016 Aug 13.

PMID:
27530919
35.

Btg2 is a Negative Regulator of Cardiomyocyte Hypertrophy through a Decrease in Cytosolic RNA.

Masumura Y, Higo S, Asano Y, Kato H, Yan Y, Ishino S, Tsukamoto O, Kioka H, Hayashi T, Shintani Y, Yamazaki S, Minamino T, Kitakaze M, Komuro I, Takashima S, Sakata Y.

Sci Rep. 2016 Jun 27;6:28592. doi: 10.1038/srep28592.

36.

Regulation of alternative polyadenylation by Nkx2-5 and Xrn2 during mouse heart development.

Nimura K, Yamamoto M, Takeichi M, Saga K, Takaoka K, Kawamura N, Nitta H, Nagano H, Ishino S, Tanaka T, Schwartz RJ, Aburatani H, Kaneda Y.

Elife. 2016 Jun 22;5. pii: e16030. doi: 10.7554/eLife.16030.

37.

In Vivo PET Imaging of HDL in Multiple Atherosclerosis Models.

Pérez-Medina C, Binderup T, Lobatto ME, Tang J, Calcagno C, Giesen L, Wessel CH, Witjes J, Ishino S, Baxter S, Zhao Y, Ramachandran S, Eldib M, Sánchez-Gaytán BL, Robson PM, Bini J, Granada JF, Fish KM, Stroes ES, Duivenvoorden R, Tsimikas S, Lewis JS, Reiner T, Fuster V, Kjær A, Fisher EA, Fayad ZA, Mulder WJ.

JACC Cardiovasc Imaging. 2016 Aug;9(8):950-61. doi: 10.1016/j.jcmg.2016.01.020. Epub 2016 May 25.

38.

Similarity in Neuronal Firing Regimes across Mammalian Species.

Mochizuki Y, Onaga T, Shimazaki H, Shimokawa T, Tsubo Y, Kimura R, Saiki A, Sakai Y, Isomura Y, Fujisawa S, Shibata K, Hirai D, Furuta T, Kaneko T, Takahashi S, Nakazono T, Ishino S, Sakurai Y, Kitsukawa T, Lee JW, Lee H, Jung MW, Babul C, Maldonado PE, Takahashi K, Arce-McShane FI, Ross CF, Sessle BJ, Hatsopoulos NG, Brochier T, Riehle A, Chorley P, Grün S, Nishijo H, Ichihara-Takeda S, Funahashi S, Shima K, Mushiake H, Yamane Y, Tamura H, Fujita I, Inaba N, Kawano K, Kurkin S, Fukushima K, Kurata K, Taira M, Tsutsui K, Ogawa T, Komatsu H, Koida K, Toyama K, Richmond BJ, Shinomoto S.

J Neurosci. 2016 May 25;36(21):5736-47. doi: 10.1523/JNEUROSCI.0230-16.2016.

39.

Effect of Exercise and Calorie Restriction on Tissue Acylcarnitines, Tissue Desaturase Indices, and Fat Accumulation in Diet-Induced Obese Rats.

Gopalan V, Michael N, Ishino S, Lee SS, Yang AY, Bhanu Prakash KN, Yaligar J, Sadananthan SA, Kaneko M, Zhou Z, Satomi Y, Hirayama M, Kamiguchi H, Zhu B, Horiguchi T, Nishimoto T, Velan SS.

Sci Rep. 2016 May 20;6:26445. doi: 10.1038/srep26445.

40.

PCNA is involved in the EndoQ-mediated DNA repair process in Thermococcales.

Shiraishi M, Ishino S, Yoshida K, Yamagami T, Cann I, Ishino Y.

Sci Rep. 2016 May 6;6:25532. doi: 10.1038/srep25532.

41.

Identification of a mismatch-specific endonuclease in hyperthermophilic Archaea.

Ishino S, Nishi Y, Oda S, Uemori T, Sagara T, Takatsu N, Yamagami T, Shirai T, Ishino Y.

Nucleic Acids Res. 2016 Apr 20;44(7):2977-86. doi: 10.1093/nar/gkw153. Epub 2016 Mar 21.

42.

Mutation of the gene encoding the ribonuclease P RNA in the hyperthermophilic archaeon Thermococcus kodakarensis causes decreased growth rate and impaired processing of tRNA precursors.

Ueda T, Ishino S, Suematsu K, Nakashima T, Kakuta Y, Kawarabayasi Y, Ishino Y, Kimura M.

Biochem Biophys Res Commun. 2015 Dec 25;468(4):660-5. doi: 10.1016/j.bbrc.2015.11.012. Epub 2015 Nov 10.

PMID:
26551464
43.

A longer finger-subdomain of family A DNA polymerases found by metagenomic analysis strengthens DNA binding and primer extension abilities.

Yamagami T, Matsukawa H, Tsunekawa S, Kawarabayasi Y, Ishino S, Ishino Y.

Gene. 2016 Feb 1;576(2 Pt 1):690-5. doi: 10.1016/j.gene.2015.10.030. Epub 2015 Oct 22.

44.

Differences in histone modifications between slow- and fast-twitch muscle of adult rats and following overload, denervation, or valproic acid administration.

Kawano F, Nimura K, Ishino S, Nakai N, Nakata K, Ohira Y.

J Appl Physiol (1985). 2015 Nov 15;119(10):1042-52. doi: 10.1152/japplphysiol.00289.2015. Epub 2015 Sep 24.

45.

Imaging Macrophage and Hematopoietic Progenitor Proliferation in Atherosclerosis.

Ye YX, Calcagno C, Binderup T, Courties G, Keliher EJ, Wojtkiewicz GR, Iwamoto Y, Tang J, Pérez-Medina C, Mani V, Ishino S, Johnbeck CB, Knigge U, Fayad ZA, Libby P, Weissleder R, Tawakol A, Dubey S, Belanger AP, Di Carli MF, Swirski FK, Kjaer A, Mulder WJ, Nahrendorf M.

Circ Res. 2015 Oct 23;117(10):835-45. doi: 10.1161/CIRCRESAHA.115.307024. Epub 2015 Sep 22.

46.

QUANTUM INFORMATION. Coherent coupling between a ferromagnetic magnon and a superconducting qubit.

Tabuchi Y, Ishino S, Noguchi A, Ishikawa T, Yamazaki R, Usami K, Nakamura Y.

Science. 2015 Jul 24;349(6246):405-8. doi: 10.1126/science.aaa3693. Epub 2015 Jul 9.

47.

Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I.

Miyazono K, Ishino S, Tsutsumi K, Ito T, Ishino Y, Tanokura M.

Nucleic Acids Res. 2015 Aug 18;43(14):7122-36. doi: 10.1093/nar/gkv654. Epub 2015 Jul 2.

48.

Guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.

Wen L, Fukuda M, Sunada M, Ishino S, Ishino Y, Okita TW, Ogawa M, Ueda T, Kumamaru T.

J Exp Bot. 2015 Oct;66(20):6137-47. doi: 10.1093/jxb/erv325. Epub 2015 Jul 1.

49.

EndoQ and EndoV work individually for damaged DNA base repair in Pyrococcus furiosus.

Ishino S, Makita N, Shiraishi M, Yamagami T, Ishino Y.

Biochimie. 2015 Nov;118:264-9. doi: 10.1016/j.biochi.2015.06.015. Epub 2015 Jun 24.

PMID:
26116888
50.

Evaluation of the therapeutic efficacy of a MEK inhibitor (TAK-733) using ¹⁸F-fluorodeoxyglucose-positron emission tomography in the human lung xenograft model A549.

Ishino S, Miyake H, Vincent P, Mori I.

Ann Nucl Med. 2015 Aug;29(7):613-20. doi: 10.1007/s12149-015-0984-4. Epub 2015 May 27.

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