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Items: 28

1.

Membrane reshaping by micrometric curvature sensitive septin filaments.

Beber A, Taveneau C, Nania M, Tsai FC, Di Cicco A, Bassereau P, Lévy D, Cabral JT, Isambert H, Mangenot S, Bertin A.

Nat Commun. 2019 Jan 24;10(1):420. doi: 10.1038/s41467-019-08344-5.

2.

MIIC online: a web server to reconstruct causal or non-causal networks from non-perturbative data.

Sella N, Verny L, Uguzzoni G, Affeldt S, Isambert H.

Bioinformatics. 2018 Jul 1;34(13):2311-2313. doi: 10.1093/bioinformatics/btx844.

PMID:
29300827
3.

Learning causal networks with latent variables from multivariate information in genomic data.

Verny L, Sella N, Affeldt S, Singh PP, Isambert H.

PLoS Comput Biol. 2017 Oct 2;13(10):e1005662. doi: 10.1371/journal.pcbi.1005662. eCollection 2017 Oct.

4.

3off2: A network reconstruction algorithm based on 2-point and 3-point information statistics.

Affeldt S, Verny L, Isambert H.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:12. doi: 10.1186/s12859-015-0856-x.

5.

Identification of Ohnolog Genes Originating from Whole Genome Duplication in Early Vertebrates, Based on Synteny Comparison across Multiple Genomes.

Singh PP, Arora J, Isambert H.

PLoS Comput Biol. 2015 Jul 16;11(7):e1004394. doi: 10.1371/journal.pcbi.1004394. eCollection 2015 Jul.

6.

Human dominant disease genes are enriched in paralogs originating from whole genome duplication.

Singh PP, Affeldt S, Malaguti G, Isambert H.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003754. doi: 10.1371/journal.pcbi.1003754. eCollection 2014 Jul. No abstract available.

7.

On the retention of gene duplicates prone to dominant deleterious mutations.

Malaguti G, Singh PP, Isambert H.

Theor Popul Biol. 2014 May;93:38-51. doi: 10.1016/j.tpb.2014.01.004. Epub 2014 Feb 12.

PMID:
24530892
8.

[Evolution and cancer: expansion of dangerous gene repertoire by whole genome duplications].

Affeldt S, Singh PP, Cascone I, Selimoglu R, Camonis J, Isambert H.

Med Sci (Paris). 2013 Apr;29(4):358-61. doi: 10.1051/medsci/2013294008. Epub 2013 Apr 26. French. No abstract available.

9.

On the expansion of "dangerous" gene repertoires by whole-genome duplications in early vertebrates.

Singh PP, Affeldt S, Cascone I, Selimoglu R, Camonis J, Isambert H.

Cell Rep. 2012 Nov 29;2(5):1387-98. doi: 10.1016/j.celrep.2012.09.034. Epub 2012 Nov 15.

10.

Logistic map analysis of biomolecular network evolution.

Stein RR, Isambert H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Nov;84(5 Pt 1):051904. Epub 2011 Nov 10.

PMID:
22181441
11.

A boost for the emerging field of RNA nanotechnology.

Shukla GC, Haque F, Tor Y, Wilhelmsson LM, Toulmé JJ, Isambert H, Guo P, Rossi JJ, Tenenbaum SA, Shapiro BA.

ACS Nano. 2011 May 24;5(5):3405-18. doi: 10.1021/nn200989r.

12.

A nanostructure made of a bacterial noncoding RNA.

Cayrol B, Nogues C, Dawid A, Sagi I, Silberzan P, Isambert H.

J Am Chem Soc. 2009 Dec 2;131(47):17270-6. doi: 10.1021/ja906076e.

PMID:
19821568
13.

On the need for widespread horizontal gene transfers under genome size constraint.

Isambert H, Stein RR.

Biol Direct. 2009 Aug 25;4:28. doi: 10.1186/1745-6150-4-28.

14.

RNA synthetic biology inspired from bacteria: construction of transcription attenuators under antisense regulation.

Dawid A, Cayrol B, Isambert H.

Phys Biol. 2009 Jul 1;6(2):025007. doi: 10.1088/1478-3975/6/2/025007.

PMID:
19571368
15.

The jerky and knotty dynamics of RNA.

Isambert H.

Methods. 2009 Oct;49(2):189-96. doi: 10.1016/j.ymeth.2009.06.005. Epub 2009 Jun 27. Review.

PMID:
19563894
16.

A comparative evolutionary study of transcription networks. The global role of feedback and hierachical structures.

Sellerio AL, Bassetti B, Isambert H, Cosentino Lagomarsino M.

Mol Biosyst. 2009 Feb;5(2):170-9. doi: 10.1039/b815339f. Epub 2008 Nov 25.

PMID:
19156263
17.

Conservation and topology of protein interaction networks under duplication-divergence evolution.

Evlampiev K, Isambert H.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. doi: 10.1073/pnas.0804119105. Epub 2008 Jul 16.

18.
19.

Hierarchy and feedback in the evolution of the Escherichia coli transcription network.

Cosentino Lagomarsino M, Jona P, Bassetti B, Isambert H.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5516-20. Epub 2007 Mar 19.

20.

Encoding folding paths of RNA switches.

Xayaphoummine A, Viasnoff V, Harlepp S, Isambert H.

Nucleic Acids Res. 2007;35(2):614-22. Epub 2006 Dec 18.

21.

DNA nanomechanical switches under folding kinetics control.

Viasnoff V, Meller A, Isambert H.

Nano Lett. 2006 Jan;6(1):101-4.

PMID:
16402795
22.

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.

Xayaphoummine A, Bucher T, Isambert H.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W605-10.

23.

Probing complex RNA structures by mechanical force.

Harlepp S, Marchal T, Robert J, Léger JF, Xayaphoummine A, Isambert H, Chatenay D.

Eur Phys J E Soft Matter. 2003 Dec;12(4):605-15.

PMID:
15007758
24.

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.

Xayaphoummine A, Bucher T, Thalmann F, Isambert H.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15310-5. Epub 2003 Dec 15.

25.

Undulation instability of lipid membranes under an electric field.

Sens P, Isambert H.

Phys Rev Lett. 2002 Mar 25;88(12):128102. Epub 2002 Mar 7.

PMID:
11909504
26.

Electrohydrodynamically induced aggregation during constant and pulsed field capillary electrophoresis of DNA.

Magnúsdóttir S, Isambert H, Heller C, Viovy JL.

Biopolymers. 1999 Apr 15;49(5):385-401.

PMID:
11180047
27.

Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme.

Isambert H, Siggia ED.

Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6515-20.

28.

Flexibility of actin filaments derived from thermal fluctuations. Effect of bound nucleotide, phalloidin, and muscle regulatory proteins.

Isambert H, Venier P, Maggs AC, Fattoum A, Kassab R, Pantaloni D, Carlier MF.

J Biol Chem. 1995 May 12;270(19):11437-44.

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