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Items: 1 to 50 of 129

1.

Validation of NGS for mitochondrial DNA casework at the FBI Laboratory.

Brandhagen MD, Just RS, Irwin JA.

Forensic Sci Int Genet. 2020 Jan;44:102151. doi: 10.1016/j.fsigen.2019.102151. Epub 2019 Oct 6.

2.

Bovine colostrum-driven modulation of intestinal epithelial cells for increased commensal colonisation.

Morrin ST, Lane JA, Marotta M, Bode L, Carrington SD, Irwin JA, Hickey RM.

Appl Microbiol Biotechnol. 2019 Mar;103(6):2745-2758. doi: 10.1007/s00253-019-09642-0. Epub 2019 Jan 26.

PMID:
30685814
3.

Interrogation of Milk-Driven Changes to the Proteome of Intestinal Epithelial Cells by Integrated Proteomics and Glycomics.

Morrin ST, Owens RA, Le Berre M, Gerlach JQ, Joshi L, Bode L, Irwin JA, Hickey RM.

J Agric Food Chem. 2019 Feb 20;67(7):1902-1917. doi: 10.1021/acs.jafc.8b06484. Epub 2019 Feb 6.

PMID:
30663306
4.

Hyperglycemia and Adverse Pregnancy Outcome Follow-up Study (HAPO FUS): Maternal Gestational Diabetes Mellitus and Childhood Glucose Metabolism.

Lowe WL Jr, Scholtens DM, Kuang A, Linder B, Lawrence JM, Lebenthal Y, McCance D, Hamilton J, Nodzenski M, Talbot O, Brickman WJ, Clayton P, Ma RC, Tam WH, Dyer AR, Catalano PM, Lowe LP, Metzger BE; HAPO Follow-up Study Cooperative Research Group.

Diabetes Care. 2019 Mar;42(3):372-380. doi: 10.2337/dc18-1646. Epub 2019 Jan 17.

PMID:
30655380
5.

Hyperglycemia and Adverse Pregnancy Outcome Follow-up Study (HAPO FUS): Maternal Glycemia and Childhood Glucose Metabolism.

Scholtens DM, Kuang A, Lowe LP, Hamilton J, Lawrence JM, Lebenthal Y, Brickman WJ, Clayton P, Ma RC, McCance D, Tam WH, Catalano PM, Linder B, Dyer AR, Lowe WL Jr, Metzger BE; HAPO Follow-up Study Cooperative Research Group; HAPO Follow-Up Study Cooperative Research Group.

Diabetes Care. 2019 Mar;42(3):381-392. doi: 10.2337/dc18-2021. Epub 2019 Jan 7.

PMID:
30617141
6.

Fragmented Nuclear DNA is the Predominant Genetic Material in Human Hair Shafts.

Brandhagen MD, Loreille O, Irwin JA.

Genes (Basel). 2018 Dec 18;9(12). pii: E640. doi: 10.3390/genes9120640.

7.

Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus.

Jones DM, Wells R, Pullen N, Trick M, Irwin JA, Morris RJ.

Plant J. 2018 Oct;96(1):103-118. doi: 10.1111/tpj.14020. Epub 2018 Aug 24.

8.

Use of the LUS in sequence allele designations to facilitate probabilistic genotyping of NGS-based STR typing results.

Just RS, Irwin JA.

Forensic Sci Int Genet. 2018 May;34:197-205. doi: 10.1016/j.fsigen.2018.02.016. Epub 2018 Feb 21.

9.

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens.

Loreille O, Ratnayake S, Bazinet AL, Stockwell TB, Sommer DD, Rohland N, Mallick S, Johnson PLF, Skoglund P, Onorato AJ, Bergman NH, Reich D, Irwin JA.

Genes (Basel). 2018 Mar 1;9(3). pii: E135. doi: 10.3390/genes9030135.

10.

Absence of warmth permits epigenetic memory of winter in Arabidopsis.

Hepworth J, Antoniou-Kourounioti RL, Bloomer RH, Selga C, Berggren K, Cox D, Collier Harris BR, Irwin JA, Holm S, Säll T, Howard M, Dean C.

Nat Commun. 2018 Feb 12;9(1):639. doi: 10.1038/s41467-018-03065-7.

11.

Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data.

Eckes AH, Gubała T, Nowakowski P, Szymczyszyn T, Wells R, Irwin JA, Horro C, Hancock JM, King G, Dyer SC, Jurkowski W.

Version 2. F1000Res. 2017 Apr 12 [revised 2017 Jan 1];6:465. doi: 10.12688/f1000research.11301.2. eCollection 2017.

12.

Performance and concordance of the ForenSeq™ system for autosomal and Y chromosome short tandem repeat sequencing of reference-type specimens.

Just RS, Moreno LI, Smerick JB, Irwin JA.

Forensic Sci Int Genet. 2017 May;28:1-9. doi: 10.1016/j.fsigen.2017.01.001. Epub 2017 Jan 9.

13.

Ultraluminous X-ray bursts in two ultracompact companions to nearby elliptical galaxies.

Irwin JA, Maksym WP, Sivakoff GR, Romanowsky AJ, Lin D, Speegle T, Prado I, Mildebrath D, Strader J, Liu J, Miller JM.

Nature. 2016 Oct 20;538(7625):356-358. doi: 10.1038/nature19822.

PMID:
27762351
14.

COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures.

Hawkes EJ, Hennelly SP, Novikova IV, Irwin JA, Dean C, Sanbonmatsu KY.

Cell Rep. 2016 Sep 20;16(12):3087-3096. doi: 10.1016/j.celrep.2016.08.045.

15.

Concordance and reproducibility of a next generation mtGenome sequencing method for high-quality samples using the Illumina MiSeq.

Peck MA, Brandhagen MD, Marshall C, Diegoli TM, Irwin JA, Sturk-Andreaggi K.

Forensic Sci Int Genet. 2016 Sep;24:103-111. doi: 10.1016/j.fsigen.2016.06.003. Epub 2016 Jun 6.

PMID:
27368088
16.

Nucleotide polymorphism affecting FLC expression underpins heading date variation in horticultural brassicas.

Irwin JA, Soumpourou E, Lister C, Ligthart JD, Kennedy S, Dean C.

Plant J. 2016 Sep;87(6):597-605. doi: 10.1111/tpj.13221. Epub 2016 Jul 19.

17.
18.

Massively parallel sequencing of forensic STRs: Considerations of the DNA commission of the International Society for Forensic Genetics (ISFG) on minimal nomenclature requirements.

Parson W, Ballard D, Budowle B, Butler JM, Gettings KB, Gill P, Gusmão L, Hares DR, Irwin JA, King JL, Knijff P, Morling N, Prinz M, Schneider PM, Neste CV, Willuweit S, Phillips C.

Forensic Sci Int Genet. 2016 May;22:54-63. doi: 10.1016/j.fsigen.2016.01.009. Epub 2016 Jan 21.

PMID:
26844919
19.

Tobacco Use and Its Relationship to Social Determinants of Health in LGBT Populations of a Midwestern State.

Pelster AD, Fisher CM, Irwin JA, Coleman JD, McCarthy MA.

LGBT Health. 2015 Mar;2(1):71-6. doi: 10.1089/lgbt.2014.0012. Epub 2014 Aug 22.

PMID:
26790020
20.

Mental Health Disparities Within the LGBT Population: A Comparison Between Transgender and Nontransgender Individuals.

Su D, Irwin JA, Fisher C, Ramos A, Kelley M, Mendoza DAR, Coleman JD.

Transgend Health. 2016 Jan 1;1(1):12-20. doi: 10.1089/trgh.2015.0001. eCollection 2016.

21.

Mitochondrial DNA heteroplasmy in the emerging field of massively parallel sequencing.

Just RS, Irwin JA, Parson W.

Forensic Sci Int Genet. 2015 Sep;18:131-9. doi: 10.1016/j.fsigen.2015.05.003. Epub 2015 May 6. Review.

22.

Full mtGenome reference data: development and characterization of 588 forensic-quality haplotypes representing three U.S. populations.

Just RS, Scheible MK, Fast SA, Sturk-Andreaggi K, Röck AW, Bush JM, Higginbotham JL, Peck MA, Ring JD, Huber GE, Xavier C, Strobl C, Lyons EA, Diegoli TM, Bodner M, Fendt L, Kralj P, Nagl S, Niederwieser D, Zimmermann B, Parson W, Irwin JA.

Forensic Sci Int Genet. 2015 Jan;14:141-55. doi: 10.1016/j.fsigen.2014.09.021. Epub 2014 Oct 5.

23.

Determining binding sites of polycyclic aromatic small molecule-based amyloid-beta peptide aggregation modulators using sequence-specific antibodies.

Irwin JA, Edward Wong H, Kwon I.

Anal Biochem. 2015 Feb 1;470:61-70. doi: 10.1016/j.ab.2014.10.016. Epub 2014 Nov 1.

PMID:
25449301
24.

Massively parallel sequencing of complete mitochondrial genomes from hair shaft samples.

Parson W, Huber G, Moreno L, Madel MB, Brandhagen MD, Nagl S, Xavier C, Eduardoff M, Callaghan TC, Irwin JA.

Forensic Sci Int Genet. 2015 Mar;15:8-15. doi: 10.1016/j.fsigen.2014.11.009. Epub 2014 Nov 18.

PMID:
25438934
25.

Questioning the prevalence and reliability of human mitochondrial DNA heteroplasmy from massively parallel sequencing data.

Just RS, Irwin JA, Parson W.

Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):E4546-7. doi: 10.1073/pnas.1413478111. Epub 2014 Oct 15. No abstract available.

26.

Brassica oleracea and B. napus.

Sparrow PA, Irwin JA.

Methods Mol Biol. 2015;1223:287-97. doi: 10.1007/978-1-4939-1695-5_23.

PMID:
25300849
27.

DNA Commission of the International Society for Forensic Genetics: revised and extended guidelines for mitochondrial DNA typing.

Parson W, Gusmão L, Hares DR, Irwin JA, Mayr WR, Morling N, Pokorak E, Prinz M, Salas A, Schneider PM, Parsons TJ; DNA Commission of the International Society for Forensic Genetics.

Forensic Sci Int Genet. 2014 Nov;13:134-42. doi: 10.1016/j.fsigen.2014.07.010. Epub 2014 Jul 29.

PMID:
25117402
28.

Development of forensic-quality full mtGenome haplotypes: success rates with low template specimens.

Just RS, Scheible MK, Fast SA, Sturk-Andreaggi K, Higginbotham JL, Lyons EA, Bush JM, Peck MA, Ring JD, Diegoli TM, Röck AW, Huber GE, Nagl S, Strobl C, Zimmermann B, Parson W, Irwin JA.

Forensic Sci Int Genet. 2014 May;10:73-9. doi: 10.1016/j.fsigen.2014.01.010. Epub 2014 Feb 6.

29.

Mitochondrial control region variation in a Korean population sample.

Scheible M, Kim SH, Sturk-Andreaggi K, Coble MD, Irwin JA.

Int J Legal Med. 2014 Sep;128(5):745-6. doi: 10.1007/s00414-014-0963-7. Epub 2014 Feb 27.

PMID:
24573746
30.

Modulation of expression in BEAS-2B airway epithelial cells of α-L-fucosidase A1 and A2 by Th1 and Th2 cytokines, and overexpression of α-L-fucosidase 2.

Sobkowicz AD, Gallagher ME, Reid CJ, Crean D, Carrington SD, Irwin JA.

Mol Cell Biochem. 2014 May;390(1-2):101-13. doi: 10.1007/s11010-014-1961-2. Epub 2014 Jan 28.

PMID:
24469468
31.

The South Carolina LGBT needs assessment: a descriptive overview.

Coleman JD, Irwin JA, Wilson RC, Miller HC.

J Homosex. 2014;61(8):1152-71. doi: 10.1080/00918369.2014.872515.

PMID:
24345299
32.

Correlates of suicide ideation among LGBT Nebraskans.

Irwin JA, Coleman JD, Fisher CM, Marasco VM.

J Homosex. 2014;61(8):1172-91. doi: 10.1080/00918369.2014.872521.

PMID:
24344775
33.

Rural LGBT health: Introduction to a dedicated issue of the Journal of Homosexuality.

Fisher CM, Irwin JA, Coleman JD.

J Homosex. 2014;61(8):1057-61. doi: 10.1080/00918369.2014.872486. No abstract available.

PMID:
24344751
34.

LGBT health in the midlands: a rural/urban comparison of basic health indicators.

Fisher CM, Irwin JA, Coleman JD.

J Homosex. 2014;61(8):1062-90. doi: 10.1080/00918369.2014.872487.

PMID:
24344731
35.

A high-throughput Sanger strategy for human mitochondrial genome sequencing.

Lyons EA, Scheible MK, Sturk-Andreaggi K, Irwin JA, Just RS.

BMC Genomics. 2013 Dec 16;14:881. doi: 10.1186/1471-2164-14-881.

36.

A HPLC-based glycoanalytical protocol allows the use of natural O-glycans derived from glycoproteins as substrates for glycosidase discovery from microbial culture.

Liu L, Tharmalingam T, Maischberger E, Albrecht S, Gallagher ME, Miranda-Casoluengo R, Meijer WG, Rudd PM, Irwin JA.

Glycoconj J. 2013 Nov;30(8):791-800. doi: 10.1007/s10719-013-9483-9. Epub 2013 Jun 25.

PMID:
23793847
37.

The expression of mucin genes and the presence of mucin gene products in the equine endometrium.

Maischberger E, Cummins CA, Fitzpatrick E, Gallagher ME, Worrall S, Rousseau K, Thornton DJ, Meijer WG, Miranda-Casoluengo R, Duggan VE, Carrington SD, Irwin JA, Reid CJ.

Res Vet Sci. 2013 Aug;95(1):169-75. doi: 10.1016/j.rvsc.2013.03.012. Epub 2013 Apr 11.

PMID:
23583093
38.

Isolation, characterization, and nuclease activity of biologically relevant chromium(V) complexes with monosaccharides and model diols. Likely intermediates in chromium-induced cancers.

Bartholomäus R, Irwin JA, Shi L, Smith SM, Levina A, Lay PA.

Inorg Chem. 2013 Apr 15;52(8):4282-92. doi: 10.1021/ic3022408. Epub 2013 Mar 26.

PMID:
23531300
39.

Targeting of heparanase-modified syndecan-1 by prosecretory mitogen lacritin requires conserved core GAGAL plus heparan and chondroitin sulfate as a novel hybrid binding site that enhances selectivity.

Zhang Y, Wang N, Raab RW, McKown RL, Irwin JA, Kwon I, van Kuppevelt TH, Laurie GW.

J Biol Chem. 2013 Apr 26;288(17):12090-101. doi: 10.1074/jbc.M112.422717. Epub 2013 Mar 15.

40.

Halogenation generates effective modulators of amyloid-Beta aggregation and neurotoxicity.

Wong HE, Irwin JA, Kwon I.

PLoS One. 2013;8(2):e57288. doi: 10.1371/journal.pone.0057288. Epub 2013 Feb 28.

41.

Mitochondrial DNA control region variation from samples of the Moroccan population.

Aboukhalid R, Sturk-Andreaggi K, Bouabdellah M, Squalli D, Irwin JA, Amzazi S.

Int J Legal Med. 2013 Jul;127(4):757-9. doi: 10.1007/s00414-012-0813-4. Epub 2013 Jan 3.

PMID:
23283404
42.

Different fates of Alzheimer's disease amyloid-β fibrils remodeled by biocompatible small molecules.

Irwin JA, Wong HE, Kwon I.

Biomacromolecules. 2013 Jan 14;14(1):264-74. doi: 10.1021/bm3016994. Epub 2012 Dec 3.

PMID:
23157384
43.

Molecular aspects of mucin biosynthesis and mucus formation in the bovine cervix during the periestrous period.

Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A, Baird A, Loftus BJ, Evans AC, Carrington SD.

Physiol Genomics. 2012 Dec 18;44(24):1165-78. doi: 10.1152/physiolgenomics.00088.2012. Epub 2012 Oct 23.

PMID:
23092952
44.

Characterization of mitochondrial DNA control region lineages in Iraq.

Al-Zahery N, Saunier J, Ellingson K, Parson W, Parsons TJ, Irwin JA.

Int J Legal Med. 2013 Mar;127(2):373-5. doi: 10.1007/s00414-012-0757-8. Epub 2012 Aug 29.

PMID:
22926116
45.

A cautionary note on switching mitochondrial DNA reference sequences in forensic genetics.

Salas A, Coble M, Desmyter S, Grzybowski T, Gusmão L, Hohoff C, Holland MM, Irwin JA, Kupiec T, Lee HY, Ludes B, Lutz-Bonengel S, Melton T, Parsons TJ, Pfeiffer H, Prieto L, Tagliabracci A, Parson W.

Forensic Sci Int Genet. 2012 Dec;6(6):e182-4. doi: 10.1016/j.fsigen.2012.06.015. Epub 2012 Jul 25. No abstract available.

PMID:
22840856
46.

Horse liver alcohol dehydrogenase: new perspectives for an old enzyme.

Quaglia D, Irwin JA, Paradisi F.

Mol Biotechnol. 2012 Nov;52(3):244-50. doi: 10.1007/s12033-012-9542-7.

PMID:
22544564
47.

Characterization of a modified amplification approach for improved STR recovery from severely degraded skeletal elements.

Irwin JA, Just RS, Loreille OM, Parsons TJ.

Forensic Sci Int Genet. 2012 Sep;6(5):578-87. doi: 10.1016/j.fsigen.2012.01.010. Epub 2012 Mar 7.

PMID:
22402195
48.

Functional alleles of the flowering time regulator FRIGIDA in the Brassica oleracea genome.

Irwin JA, Lister C, Soumpourou E, Zhang Y, Howell EC, Teakle G, Dean C.

BMC Plant Biol. 2012 Feb 14;12:21. doi: 10.1186/1471-2229-12-21.

49.

Analysing mucin degradation.

Carrington SD, Irwin JA, Liu L, Rudd PM, Matthews E, Corfield AP.

Methods Mol Biol. 2012;842:191-215. doi: 10.1007/978-1-61779-513-8_11.

PMID:
22259137
50.

Capillary electrophoresis of human mtDNA control region sequences from highly degraded samples using short mtDNA amplicons.

Loreille OM, Irwin JA.

Methods Mol Biol. 2012;830:283-99. doi: 10.1007/978-1-61779-461-2_20.

PMID:
22139668

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