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Items: 22

1.

Evaluating corrections for Eddy-currents and other EPI distortions in diffusion MRI: methodology and a dataset for benchmarking.

Irfanoglu MO, Sarlls J, Nayak A, Pierpaoli C.

Magn Reson Med. 2019 Apr;81(4):2774-2787. doi: 10.1002/mrm.27577. Epub 2018 Nov 5.

2.

Limits to anatomical accuracy of diffusion tractography using modern approaches.

Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Rafael-Patino J, Romascano D, Rensonnet G, Pizzolato M, Bates A, Fischi E, Thiran JP, Canales-Rodríguez EJ, Huang C, Zhu H, Zhong L, Cabeen R, Toga AW, Rheault F, Theaud G, Houde JC, Sidhu J, Chamberland M, Westin CF, Dyrby TB, Verma R, Rathi Y, Irfanoglu MO, Thomas C, Pierpaoli C, Descoteaux M, Anderson AW, Landman BA.

Neuroimage. 2019 Jan 15;185:1-11. doi: 10.1016/j.neuroimage.2018.10.029. Epub 2018 Oct 11.

3.

Tensor-based morphometry using scalar and directional information of diffusion tensor MRI data (DTBM): Application to hereditary spastic paraplegia.

Sadeghi N, Arrigoni F, D'Angelo MG, Thomas C, Irfanoglu MO, Hutchinson EB, Nayak A, Modi P, Bassi MT, Pierpaoli C.

Hum Brain Mapp. 2018 Dec;39(12):4643-4651. doi: 10.1002/hbm.24278. Epub 2018 Sep 25.

PMID:
30253021
4.

Detection and Distinction of Mild Brain Injury Effects in a Ferret Model Using Diffusion Tensor MRI (DTI) and DTI-Driven Tensor-Based Morphometry (D-TBM).

Hutchinson EB, Schwerin SC, Radomski KL, Sadeghi N, Komlosh ME, Irfanoglu MO, Juliano SL, Pierpaoli C.

Front Neurosci. 2018 Aug 17;12:573. doi: 10.3389/fnins.2018.00573. eCollection 2018.

5.

Defining an Analytic Framework to Evaluate Quantitative MRI Markers of Traumatic Axonal Injury: Preliminary Results in a Mouse Closed Head Injury Model.

Haber M, Hutchinson EB, Sadeghi N, Cheng WH, Namjoshi D, Cripton P, Irfanoglu MO, Wellington C, Diaz-Arrastia R, Pierpaoli C.

eNeuro. 2017 Sep 13;4(5). pii: ENEURO.0164-17.2017. doi: 10.1523/ENEURO.0164-17.2017. eCollection 2017 Sep-Oct.

6.

Population based MRI and DTI templates of the adult ferret brain and tools for voxelwise analysis.

Hutchinson EB, Schwerin SC, Radomski KL, Sadeghi N, Jenkins J, Komlosh ME, Irfanoglu MO, Juliano SL, Pierpaoli C.

Neuroimage. 2017 May 15;152:575-589. doi: 10.1016/j.neuroimage.2017.03.009. Epub 2017 Mar 16.

7.

Analysis of the effects of noise, DWI sampling, and value of assumed parameters in diffusion MRI models.

Hutchinson EB, Avram AV, Irfanoglu MO, Koay CG, Barnett AS, Komlosh ME, Özarslan E, Schwerin SC, Juliano SL, Pierpaoli C.

Magn Reson Med. 2017 Nov;78(5):1767-1780. doi: 10.1002/mrm.26575. Epub 2017 Jan 16.

8.

Quantitative MRI and DTI Abnormalities During the Acute Period Following CCI in the Ferret.

Hutchinson EB, Schwerin SC, Radomski KL, Irfanoglu MO, Juliano SL, Pierpaoli CM.

Shock. 2016 Sep;46(3 Suppl 1):167-76. doi: 10.1097/SHK.0000000000000659.

9.

DR-TAMAS: Diffeomorphic Registration for Tensor Accurate Alignment of Anatomical Structures.

Irfanoglu MO, Nayak A, Jenkins J, Hutchinson EB, Sadeghi N, Thomas CP, Pierpaoli C.

Neuroimage. 2016 May 15;132:439-454. doi: 10.1016/j.neuroimage.2016.02.066. Epub 2016 Feb 28.

10.

Tract Orientation and Angular Dispersion Deviation Indicator (TOADDI): A framework for single-subject analysis in diffusion tensor imaging.

Koay CG, Yeh PH, Ollinger JM, İrfanoğlu MO, Pierpaoli C, Basser PJ, Oakes TR, Riedy G.

Neuroimage. 2016 Feb 1;126:151-63. doi: 10.1016/j.neuroimage.2015.11.046. Epub 2015 Nov 27.

11.

Clinical feasibility of using mean apparent propagator (MAP) MRI to characterize brain tissue microstructure.

Avram AV, Sarlls JE, Barnett AS, Özarslan E, Thomas C, Irfanoglu MO, Hutchinson E, Pierpaoli C, Basser PJ.

Neuroimage. 2016 Feb 15;127:422-434. doi: 10.1016/j.neuroimage.2015.11.027. Epub 2015 Nov 14.

12.

Investigation of vibration-induced artifact in clinical diffusion-weighted imaging of pediatric subjects.

Berl MM, Walker L, Modi P, Irfanoglu MO, Sarlls JE, Nayak A, Pierpaoli C.

Hum Brain Mapp. 2015 Dec;36(12):4745-57. doi: 10.1002/hbm.22846. Epub 2015 Sep 9.

13.

The diffusion tensor imaging (DTI) component of the NIH MRI study of normal brain development (PedsDTI).

Walker L, Chang LC, Nayak A, Irfanoglu MO, Botteron KN, McCracken J, McKinstry RC, Rivkin MJ, Wang DJ, Rumsey J, Pierpaoli C; Brain Development Cooperative Group.

Neuroimage. 2016 Jan 1;124(Pt B):1125-1130. doi: 10.1016/j.neuroimage.2015.05.083. Epub 2015 Jun 3.

PMID:
26048622
14.

DR-BUDDI (Diffeomorphic Registration for Blip-Up blip-Down Diffusion Imaging) method for correcting echo planar imaging distortions.

Irfanoglu MO, Modi P, Nayak A, Hutchinson EB, Sarlls J, Pierpaoli C.

Neuroimage. 2015 Feb 1;106:284-99. doi: 10.1016/j.neuroimage.2014.11.042. Epub 2014 Nov 26.

15.

Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited.

Thomas C, Ye FQ, Irfanoglu MO, Modi P, Saleem KS, Leopold DA, Pierpaoli C.

Proc Natl Acad Sci U S A. 2014 Nov 18;111(46):16574-9. doi: 10.1073/pnas.1405672111. Epub 2014 Nov 3.

16.

DR-BUDDI: diffeomorphic registration for blip up-down diffusion imaging.

Irfanoglu MO, Modi P, Nayak A, Knutsen A, Sarlls J, Pierpaoli C.

Med Image Comput Comput Assist Interv. 2014;17(Pt 1):218-26.

PMID:
25333121
17.

Mean apparent propagator (MAP) MRI: a novel diffusion imaging method for mapping tissue microstructure.

Özarslan E, Koay CG, Shepherd TM, Komlosh ME, İrfanoğlu MO, Pierpaoli C, Basser PJ.

Neuroimage. 2013 Sep;78:16-32. doi: 10.1016/j.neuroimage.2013.04.016. Epub 2013 Apr 13.

18.

Effects of image distortions originating from susceptibility variations and concomitant fields on diffusion MRI tractography results.

Irfanoglu MO, Walker L, Sarlls J, Marenco S, Pierpaoli C.

Neuroimage. 2012 May 15;61(1):275-88. doi: 10.1016/j.neuroimage.2012.02.054. Epub 2012 Mar 3.

19.

The feasibility of hybrid automatic segmentation of axillary lymph nodes from a 3-D sonogram.

Sammet S, Evans KD, Irfanoglu MO, Strapp A, Machiraju R.

Ultrasound Med Biol. 2011 Dec;37(12):2075-85. doi: 10.1016/j.ultrasmedbio.2011.09.002. Epub 2011 Oct 26.

PMID:
22033128
20.

Susceptibility distortion correction for echo planar images with non-uniform B-spline grid sampling: a diffusion tensor image study.

Irfanoglu MO, Walker L, Sammet S, Pierpaoli C, Machiraju R.

Med Image Comput Comput Assist Interv. 2011;14(Pt 2):174-81.

PMID:
21995027
21.

Diffusion tensor field registration in the presence of uncertainty.

Irfanoglu MO, Koay CG, Pajevic S, Machiraju R, Basser PJ.

Med Image Comput Comput Assist Interv. 2009;12(Pt 1):181-9.

PMID:
20425986
22.

Automatic deformable diffusion tensor registration for fiber population analysis.

Irfanoglu MO, Machiraju R, Sammet S, Pierpaoli C, Knopp MV.

Med Image Comput Comput Assist Interv. 2008;11(Pt 2):1014-22.

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