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Items: 1 to 50 of 80

1.

Demography and natural selection have shaped genetic variation in the widely distributed conifer Norway Spruce (Picea abies).

Wang X, Bernhardsson C, Ingvarsson PK.

Genome Biol Evol. 2020 Jan 20. pii: evaa005. doi: 10.1093/gbe/evaa005. [Epub ahead of print]

PMID:
31958121
2.

Genome-wide signatures of environmental adaptation in European aspen (Populus tremula) under current and future climate conditions.

Ingvarsson PK, Bernhardsson C.

Evol Appl. 2019 Apr 2;13(1):132-142. doi: 10.1111/eva.12792. eCollection 2020 Jan.

3.

Genome-wide association study of agronomic traits in bread wheat reveals novel putative alleles for future breeding programs.

Rahimi Y, Bihamta MR, Taleei A, Alipour H, Ingvarsson PK.

BMC Plant Biol. 2019 Dec 5;19(1):541. doi: 10.1186/s12870-019-2165-4.

4.

Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula).

Apuli RP, Bernhardsson C, Schiffthaler B, Robinson KM, Jansson S, Street NR, Ingvarsson PK.

G3 (Bethesda). 2020 Jan 7;10(1):299-309. doi: 10.1534/g3.119.400504.

5.

Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations.

Qian C, Yan X, Shi Y, Yin H, Chang Y, Chen J, Ingvarsson PK, Nevo E, Ma XF.

Heredity (Edinb). 2020 Jan;124(1):62-76. doi: 10.1038/s41437-019-0264-5. Epub 2019 Sep 16.

6.

Linking plant genes to insect communities: Identifying the genetic bases of plant traits and community composition.

Barker HL, Riehl JF, Bernhardsson C, Rubert-Nason KF, Holeski LM, Ingvarsson PK, Lindroth RL.

Mol Ecol. 2019 Oct;28(19):4404-4421. doi: 10.1111/mec.15158. Epub 2019 Jul 15.

PMID:
31233634
7.

Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce.

Baison J, Vidalis A, Zhou L, Chen ZQ, Li Z, Sillanpää MJ, Bernhardsson C, Scofield D, Forsberg N, Grahn T, Olsson L, Karlsson B, Wu H, Ingvarsson PK, Lundqvist SO, Niittylä T, García-Gil MR.

Plant J. 2019 Oct;100(1):83-100. doi: 10.1111/tpj.14429. Epub 2019 Jul 28.

8.

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies).

Bernhardsson C, Vidalis A, Wang X, Scofield DG, Schiffthaler B, Baison J, Street NR, García-Gil MR, Ingvarsson PK.

G3 (Bethesda). 2019 May 7;9(5):1623-1632. doi: 10.1534/g3.118.200840.

9.

Evolutionary Origins of Pseudogenes and Their Association with Regulatory Sequences in Plants.

Xie J, Li Y, Liu X, Zhao Y, Li B, Ingvarsson PK, Zhang D.

Plant Cell. 2019 Mar;31(3):563-578. doi: 10.1105/tpc.18.00601. Epub 2019 Feb 13.

10.

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.

Lin YC, Wang J, Delhomme N, Schiffthaler B, Sundström G, Zuccolo A, Nystedt B, Hvidsten TR, de la Torre A, Cossu RM, Hoeppner MP, Lantz H, Scofield DG, Zamani N, Johansson A, Mannapperuma C, Robinson KM, Mähler N, Leitch IJ, Pellicer J, Park EJ, Van Montagu M, Van de Peer Y, Grabherr M, Jansson S, Ingvarsson PK, Street NR.

Proc Natl Acad Sci U S A. 2018 Nov 13;115(46):E10970-E10978. doi: 10.1073/pnas.1801437115. Epub 2018 Oct 29.

11.

Pathway position constrains the evolution of an ecologically important pathway in aspens (Populus tremula L.).

Cole CT, Ingvarsson PK.

Mol Ecol. 2018 Jul 4. doi: 10.1111/mec.14785. [Epub ahead of print]

PMID:
29972878
12.

A major locus controls local adaptation and adaptive life history variation in a perennial plant.

Wang J, Ding J, Tan B, Robinson KM, Michelson IH, Johansson A, Nystedt B, Scofield DG, Nilsson O, Jansson S, Street NR, Ingvarsson PK.

Genome Biol. 2018 Jun 4;19(1):72. doi: 10.1186/s13059-018-1444-y.

13.

Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen.

Grimberg Å, Lager I, Street NR, Robinson KM, Marttila S, Mähler N, Ingvarsson PK, Bhalerao RP.

New Phytol. 2018 Jul;219(2):619-630. doi: 10.1111/nph.15197. Epub 2018 May 15.

14.

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus.

Tan B, Grattapaglia D, Wu HX, Ingvarsson PK.

Plant Sci. 2018 Feb;267:84-93. doi: 10.1016/j.plantsci.2017.11.011. Epub 2017 Nov 28.

PMID:
29362102
15.

BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species.

Schiffthaler B, Bernhardsson C, Ingvarsson PK, Street NR.

PLoS One. 2017 Dec 20;12(12):e0189256. doi: 10.1371/journal.pone.0189256. eCollection 2017.

16.

Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids.

Tan B, Grattapaglia D, Martins GS, Ferreira KZ, Sundberg B, Ingvarsson PK.

BMC Plant Biol. 2017 Jun 29;17(1):110. doi: 10.1186/s12870-017-1059-6.

17.
18.

Autumn senescence in aspen is not triggered by day length.

Michelson IH, Ingvarsson PK, Robinson KM, Edlund E, Eriksson ME, Nilsson O, Jansson S.

Physiol Plant. 2018 Jan;162(1):123-134. doi: 10.1111/ppl.12593. Epub 2017 Jul 11.

PMID:
28591431
19.

Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants.

Li Z, De La Torre AR, Sterck L, Cánovas FM, Avila C, Merino I, Cabezas JA, Cervera MT, Ingvarsson PK, Van de Peer Y.

Genome Biol Evol. 2017 May 1;9(5):1130-1147. doi: 10.1093/gbe/evx070.

20.

Gene co-expression network connectivity is an important determinant of selective constraint.

Mähler N, Wang J, Terebieniec BK, Ingvarsson PK, Street NR, Hvidsten TR.

PLoS Genet. 2017 Apr 13;13(4):e1006402. doi: 10.1371/journal.pgen.1006402. eCollection 2017 Apr.

21.

Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants.

De La Torre AR, Li Z, Van de Peer Y, Ingvarsson PK.

Mol Biol Evol. 2017 Jun 1;34(6):1363-1377. doi: 10.1093/molbev/msx069.

22.

Towards integration of population and comparative genomics in forest trees.

Ingvarsson PK, Hvidsten TR, Street NR.

New Phytol. 2016 Oct;212(2):338-44. doi: 10.1111/nph.14153. Epub 2016 Aug 30. Review.

23.

Whole genome duplication in coast redwood (Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers.

Scott AD, Stenz NW, Ingvarsson PK, Baum DA.

New Phytol. 2016 Jul;211(1):186-93. doi: 10.1111/nph.13930. Epub 2016 Mar 21.

24.

Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens.

Wang J, Street NR, Scofield DG, Ingvarsson PK.

Mol Biol Evol. 2016 Jul;33(7):1754-67. doi: 10.1093/molbev/msw051. Epub 2016 Mar 15.

25.

Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species.

Wang J, Street NR, Scofield DG, Ingvarsson PK.

Genetics. 2016 Mar;202(3):1185-200. doi: 10.1534/genetics.115.183152. Epub 2015 Dec 31.

26.

Evolutionary Quantitative Genomics of Populus trichocarpa.

Porth I, Klápště J, McKown AD, La Mantia J, Guy RD, Ingvarsson PK, Hamelin R, Mansfield SD, Ehlting J, Douglas CJ, El-Kassaby YA.

PLoS One. 2015 Nov 23;10(11):e0142864. doi: 10.1371/journal.pone.0142864. eCollection 2015.

27.

Multilocus analysis of nucleotide variation and speciation in three closely related Populus (Salicaceae) species.

Du S, Wang Z, Ingvarsson PK, Wang D, Wang J, Wu Z, Tembrock LR, Zhang J.

Mol Ecol. 2015 Oct;24(19):4994-5005. doi: 10.1111/mec.13368.

PMID:
26334549
28.

Genetic architecture and genomic patterns of gene flow between hybridizing species of Picea.

De La Torre A, Ingvarsson PK, Aitken SN.

Heredity (Edinb). 2015 Aug;115(2):153-64. doi: 10.1038/hdy.2015.19. Epub 2015 Mar 25.

29.

Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in picea gene families.

De La Torre AR, Lin YC, Van de Peer Y, Ingvarsson PK.

Genome Biol Evol. 2015 Mar 5;7(4):1002-15. doi: 10.1093/gbe/evv044.

30.

Identification of additive, dominant, and epistatic variation conferred by key genes in cellulose biosynthesis pathway in Populus tomentosa†.

Du Q, Tian J, Yang X, Pan W, Xu B, Li B, Ingvarsson PK, Zhang D.

DNA Res. 2015 Feb;22(1):53-67. doi: 10.1093/dnares/dsu040. Epub 2014 Nov 26.

31.

Insights into conifer giga-genomes.

De La Torre AR, Birol I, Bousquet J, Ingvarsson PK, Jansson S, Jones SJ, Keeling CI, MacKay J, Nilsson O, Ritland K, Street N, Yanchuk A, Zerbe P, Bohlmann J.

Plant Physiol. 2014 Dec;166(4):1724-32. doi: 10.1104/pp.114.248708. Epub 2014 Oct 27. Review.

32.

Populus tremula (European aspen) shows no evidence of sexual dimorphism.

Robinson KM, Delhomme N, Mähler N, Schiffthaler B, Onskog J, Albrectsen BR, Ingvarsson PK, Hvidsten TR, Jansson S, Street NR.

BMC Plant Biol. 2014 Oct 16;14:276. doi: 10.1186/s12870-014-0276-5.

33.

Increased genetic divergence between two closely related fir species in areas of range overlap.

Wang J, Abbott RJ, Ingvarsson PK, Liu J.

Ecol Evol. 2014 Apr;4(7):1019-29. doi: 10.1002/ece3.1007. Epub 2014 Mar 3.

34.

The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.

PMID:
23698360
35.

Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes.

Bernhardsson C, Robinson KM, Abreu IN, Jansson S, Albrectsen BR, Ingvarsson PK.

Ecol Lett. 2013 Jun;16(6):791-8. doi: 10.1111/ele.12114. Epub 2013 Apr 19.

PMID:
23601188
36.

Analysis of conifer FLOWERING LOCUS T/TERMINAL FLOWER1-like genes provides evidence for dramatic biochemical evolution in the angiosperm FT lineage.

Klintenäs M, Pin PA, Benlloch R, Ingvarsson PK, Nilsson O.

New Phytol. 2012 Dec;196(4):1260-73. doi: 10.1111/j.1469-8137.2012.04332.x. Epub 2012 Sep 28.

37.

Towards decoding the conifer giga-genome.

Mackay J, Dean JF, Plomion C, Peterson DG, Cánovas FM, Pavy N, Ingvarsson PK, Savolainen O, Guevara MÁ, Fluch S, Vinceti B, Abarca D, Díaz-Sala C, Cervera MT.

Plant Mol Biol. 2012 Dec;80(6):555-69. doi: 10.1007/s11103-012-9961-7. Epub 2012 Sep 9. Review.

PMID:
22960864
38.

Genetic variation in functional traits influences arthropod community composition in aspen (Populus tremula L.).

Robinson KM, Ingvarsson PK, Jansson S, Albrectsen BR.

PLoS One. 2012;7(5):e37679. doi: 10.1371/journal.pone.0037679. Epub 2012 May 25.

39.

Comparative nucleotide diversity across North American and European populus species.

Ismail M, Soolanayakanahally RY, Ingvarsson PK, Guy RD, Jansson S, Silim SN, El-Kassaby YA.

J Mol Evol. 2012 Jun;74(5-6):257-72. doi: 10.1007/s00239-012-9504-5. Epub 2012 May 6.

PMID:
22562720
40.

Geographical structure and adaptive population differentiation in herbivore defence genes in European aspen (Populus tremula L., Salicaceae).

Bernhardsson C, Ingvarsson PK.

Mol Ecol. 2012 May;21(9):2197-207. doi: 10.1111/j.1365-294X.2012.05524.x. Epub 2012 Mar 15.

PMID:
22417129
41.

Molecular population genetics of elicitor-induced resistance genes in European aspen (Populus tremula L., Salicaceae).

Bernhardsson C, Ingvarsson PK.

PLoS One. 2011;6(9):e24867. doi: 10.1371/journal.pone.0024867. Epub 2011 Sep 19.

42.

Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar, Populus balsamifera L.

Keller SR, Levsen N, Ingvarsson PK, Olson MS, Tiffin P.

Genetics. 2011 Aug;188(4):941-52. doi: 10.1534/genetics.111.128041. Epub 2011 May 30.

43.

Adaptive evolution of the Populus tremula photoperiod pathway.

Hall D, Ma XF, Ingvarsson PK.

Mol Ecol. 2011 Apr;20(7):1463-74. doi: 10.1111/j.1365-294X.2011.05014.x. Epub 2011 Feb 11.

PMID:
21309875
44.

Association genetics of complex traits in plants.

Ingvarsson PK, Street NR.

New Phytol. 2011 Mar;189(4):909-22. doi: 10.1111/j.1469-8137.2010.03593.x. Epub 2010 Dec 23. Review.

45.

Gene flow and selection on phenotypic plasticity in an island system of Rana temporaria.

Lind MI, Ingvarsson PK, Johansson H, Hall D, Johansson F.

Evolution. 2011 Mar;65(3):684-97. doi: 10.1111/j.1558-5646.2010.01122.x. Epub 2010 Oct 12.

PMID:
20825480
46.

Genetic differentiation, clinal variation and phenotypic associations with growth cessation across the Populus tremula photoperiodic pathway.

Ma XF, Hall D, Onge KR, Jansson S, Ingvarsson PK.

Genetics. 2010 Nov;186(3):1033-44. doi: 10.1534/genetics.110.120873. Epub 2010 Aug 30.

47.

Cohort-structured tree populations.

Jansson S, Ingvarsson PK.

Heredity (Edinb). 2010 Oct;105(4):331-2. doi: 10.1038/hdy.2010.101. Epub 2010 Aug 18. No abstract available.

48.

Admixture facilitates adaptation from standing variation in the European aspen (Populus tremula L.), a widespread forest tree.

DE Carvalho D, Ingvarsson PK, Joseph J, Suter L, Sedivy C, Macaya-Sanz D, Cottrell J, Heinze B, Schanzer I, Lexer C.

Mol Ecol. 2010 Apr;19(8):1638-50. doi: 10.1111/j.1365-294X.2010.04595.x. Epub 2010 Mar 22.

PMID:
20345678
49.

Lead exposure and biological effects in pied flycatchers (Ficedula hypoleuca) before and after the closure of a lead mine in northern Sweden.

Berglund AM, Ingvarsson PK, Danielsson H, Nyholm NE.

Environ Pollut. 2010 May;158(5):1368-75. doi: 10.1016/j.envpol.2010.01.005. Epub 2010 Feb 8.

PMID:
20116150
50.

Using association mapping to dissect the genetic basis of complex traits in plants.

Hall D, Tegström C, Ingvarsson PK.

Brief Funct Genomics. 2010 Mar;9(2):157-65. doi: 10.1093/bfgp/elp048. Epub 2010 Jan 6. Review.

PMID:
20053815

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