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Items: 30

1.

Metagenomic and chemical characterization of soil cobalamin production.

Lu X, Heal KR, Ingalls AE, Doxey AC, Neufeld JD.

ISME J. 2019 Sep 6. doi: 10.1038/s41396-019-0502-0. [Epub ahead of print]

PMID:
31492962
2.

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean.

Wilson ST, Hawco NJ, Armbrust EV, Barone B, Björkman KM, Boysen AK, Burgos M, Burrell TJ, Casey JR, DeLong EF, Dugenne M, Dutkiewicz S, Dyhrman ST, Ferrón S, Follows MJ, Foreman RK, Funkey CP, Harke MJ, Henke BA, Hill CN, Hynes AM, Ingalls AE, Jahn O, Kelly RL, Knapp AN, Letelier RM, Ribalet F, Shimabukuro EM, Tabata RKS, Turk-Kubo KA, White AE, Zehr JP, John S, Karl DM.

Science. 2019 Sep 6;365(6457):1040-1044. doi: 10.1126/science.aax4767.

PMID:
31488692
3.

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.

Wang B, Qin W, Ren Y, Zhou X, Jung MY, Han P, Eloe-Fadrosh EA, Li M, Zheng Y, Lu L, Yan X, Ji J, Liu Y, Liu L, Heiner C, Hall R, Martens-Habbena W, Herbold CW, Rhee SK, Bartlett DH, Huang L, Ingalls AE, Wagner M, Stahl DA, Jia Z.

ISME J. 2019 Dec;13(12):3067-3079. doi: 10.1038/s41396-019-0493-x. Epub 2019 Aug 28.

4.

Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean.

Durham BP, Boysen AK, Carlson LT, Groussman RD, Heal KR, Cain KR, Morales RL, Coesel SN, Morris RM, Ingalls AE, Armbrust EV.

Nat Microbiol. 2019 Oct;4(10):1706-1715. doi: 10.1038/s41564-019-0507-5. Epub 2019 Jul 22.

PMID:
31332382
5.

Metabolic Consequences of Cobalamin Scarcity in the Diatom Thalassiosira pseudonana as Revealed Through Metabolomics.

Heal KR, Kellogg NA, Carlson LT, Lionheart RM, Ingalls AE.

Protist. 2019 Jul;170(3):328-348. doi: 10.1016/j.protis.2019.05.004. Epub 2019 May 28.

PMID:
31260945
6.

Morphological Plasticity in a Sulfur-Oxidizing Marine Bacterium from the SUP05 Clade Enhances Dark Carbon Fixation.

Shah V, Zhao X, Lundeen RA, Ingalls AE, Nicastro D, Morris RM.

MBio. 2019 May 7;10(3). pii: e00216-19. doi: 10.1128/mBio.00216-19.

7.

Heterotrophic carbon metabolism and energy acquisition in Candidatus Thioglobus singularis strain PS1, a member of the SUP05 clade of marine Gammaproteobacteria.

Spietz RL, Lundeen RA, Zhao X, Nicastro D, Ingalls AE, Morris RM.

Environ Microbiol. 2019 Jul;21(7):2391-2401. doi: 10.1111/1462-2920.14623. Epub 2019 Apr 24.

PMID:
30951247
8.

Use of exogenous glycine betaine and its precursor choline as osmoprotectants in Antarctic sea-ice diatoms1.

Torstensson A, Young JN, Carlson LT, Ingalls AE, Deming JW.

J Phycol. 2019 Jun;55(3):663-675. doi: 10.1111/jpy.12839. Epub 2019 Feb 22.

PMID:
30685888
9.

Accumulation of NO2 -cobalamin in nutrient-stressed ammonia-oxidizing archaea and in the oxygen deficient zone of the eastern tropical North Pacific.

Heal KR, Qin W, Amin SA, Devol AH, Moffett JW, Armbrust EV, Stahl DA, Ingalls AE.

Environ Microbiol Rep. 2018 Aug;10(4):453-457. doi: 10.1111/1758-2229.12664. Epub 2018 Aug 8.

PMID:
30022612
10.

Best-Matched Internal Standard Normalization in Liquid Chromatography-Mass Spectrometry Metabolomics Applied to Environmental Samples.

Boysen AK, Heal KR, Carlson LT, Ingalls AE.

Anal Chem. 2018 Jan 16;90(2):1363-1369. doi: 10.1021/acs.analchem.7b04400. Epub 2018 Jan 3.

PMID:
29239170
11.

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.

Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, Berube PM, Lowe TM, Moffett JW, Devol AH, Baliga NS, Arp DJ, Sayavedra-Soto LA, Hackett M, Armbrust EV, Ingalls AE, Stahl DA.

ISME J. 2018 Feb;12(2):508-519. doi: 10.1038/ismej.2017.186. Epub 2017 Oct 20.

12.

Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota.

Qin W, Heal KR, Ramdasi R, Kobelt JN, Martens-Habbena W, Bertagnolli AD, Amin SA, Walker CB, Urakawa H, Könneke M, Devol AH, Moffett JW, Armbrust EV, Jensen GJ, Ingalls AE, Stahl DA.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5067-5079. doi: 10.1099/ijsem.0.002416. Epub 2017 Oct 16.

PMID:
29034851
13.

Influence of oxygen availability on the activities of ammonia-oxidizing archaea.

Qin W, Meinhardt KA, Moffett JW, Devol AH, Virginia Armbrust E, Ingalls AE, Stahl DA.

Environ Microbiol Rep. 2017 Jun;9(3):250-256. doi: 10.1111/1758-2229.12525. Epub 2017 Mar 13.

PMID:
28211189
14.

Two distinct pools of B12 analogs reveal community interdependencies in the ocean.

Heal KR, Qin W, Ribalet F, Bertagnolli AD, Coyote-Maestas W, Hmelo LR, Moffett JW, Devol AH, Armbrust EV, Stahl DA, Ingalls AE.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):364-369. doi: 10.1073/pnas.1608462114. Epub 2016 Dec 27.

15.

Confounding effects of oxygen and temperature on the TEX86 signature of marine Thaumarchaeota.

Qin W, Carlson LT, Armbrust EV, Devol AH, Moffett JW, Stahl DA, Ingalls AE.

Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):10979-84. doi: 10.1073/pnas.1501568112. Epub 2015 Aug 17.

16.

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria.

Amin SA, Hmelo LR, van Tol HM, Durham BP, Carlson LT, Heal KR, Morales RL, Berthiaume CT, Parker MS, Djunaedi B, Ingalls AE, Parsek MR, Moran MA, Armbrust EV.

Nature. 2015 Jun 4;522(7554):98-101. doi: 10.1038/nature14488. Epub 2015 May 27.

PMID:
26017307
17.

The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger.

Martens-Habbena W, Qin W, Horak RE, Urakawa H, Schauer AJ, Moffett JW, Armbrust EV, Ingalls AE, Devol AH, Stahl DA.

Environ Microbiol. 2015 Jul;17(7):2261-74. doi: 10.1111/1462-2920.12677. Epub 2015 Jan 27.

PMID:
25420929
18.

Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry.

Heal KR, Carlson LT, Devol AH, Armbrust EV, Moffett JW, Stahl DA, Ingalls AE.

Rapid Commun Mass Spectrom. 2014 Nov 30;28(22):2398-404. doi: 10.1002/rcm.7040.

PMID:
25303468
19.

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation.

Qin W, Amin SA, Martens-Habbena W, Walker CB, Urakawa H, Devol AH, Ingalls AE, Moffett JW, Armbrust EV, Stahl DA.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12504-9. doi: 10.1073/pnas.1324115111. Epub 2014 Aug 11.

20.

Export of submicron particulate organic matter to mesopelagic depth in an oligotrophic gyre.

Close HG, Shah SR, Ingalls AE, Diefendorf AF, Brodie EL, Hansman RL, Freeman KH, Aluwihare LI, Pearson A.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12565-70. doi: 10.1073/pnas.1217514110. Epub 2013 Jul 15.

21.

Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea.

Horak RE, Qin W, Schauer AJ, Armbrust EV, Ingalls AE, Moffett JW, Stahl DA, Devol AH.

ISME J. 2013 Oct;7(10):2023-33. doi: 10.1038/ismej.2013.75. Epub 2013 May 9.

22.

Diatom microfossils from cretaceous and eocene sediments contain native silica precipitating long-chain polyamines.

Bridoux MC, Ingalls AE.

Geobiology. 2013 May;11(3):215-23. doi: 10.1111/gbi.12028. Epub 2013 Feb 19.

PMID:
23418943
23.

Distribution of intact and core membrane lipids of archaeal glycerol dialkyl glycerol tetraethers among size-fractionated particulate organic matter in hood canal, puget sound.

Ingalls AE, Huguet C, Truxal LT.

Appl Environ Microbiol. 2012 Mar;78(5):1480-90. doi: 10.1128/AEM.07016-11. Epub 2012 Jan 6.

24.

A new liquid chromatography/electrospray ionization mass spectrometry method for the analysis of underivatized aliphatic long-chain polyamines: application to diatom-rich sediments.

Bridoux MC, Annenkov VV, Menzel H, Keil RG, Ingalls AE.

Rapid Commun Mass Spectrom. 2011 Apr 15;25(7):877-88. doi: 10.1002/rcm.4931. Epub 2011 Mar 14.

PMID:
21416524
25.

Holocene Southern Ocean surface temperature variability west of the Antarctic Peninsula.

Shevenell AE, Ingalls AE, Domack EW, Kelly C.

Nature. 2011 Feb 10;470(7333):250-4. doi: 10.1038/nature09751. Erratum in: Nature. 2011 Apr 14;472(7342):247.

PMID:
21307939
26.

HPLC purification of higher plant-dervied lignin phenols for compound specific radiocarbon analysis.

Ingalls AE, Ellis EE, Santos GM, McDuffee KE, Truxal L, Keil RG, Druffel ER.

Anal Chem. 2010 Nov 1;82(21):8931-8. doi: 10.1021/ac1016584. Epub 2010 Oct 1.

27.

The radiocarbon signature of microorganisms in the mesopelagic ocean.

Hansman RL, Griffin S, Watson JT, Druffel ER, Ingalls AE, Pearson A, Aluwihare LI.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6513-8. doi: 10.1073/pnas.0810871106. Epub 2009 Apr 6.

28.

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol.

de la Torre JR, Walker CB, Ingalls AE, Könneke M, Stahl DA.

Environ Microbiol. 2008 Mar;10(3):810-8. doi: 10.1111/j.1462-2920.2007.01506.x. Epub 2008 Jan 19.

PMID:
18205821
29.

Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.

Ingalls AE, Shah SR, Hansman RL, Aluwihare LI, Santos GM, Druffel ER, Pearson A.

Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6442-7. Epub 2006 Apr 13.

30.

Nonmarine crenarchaeol in Nevada hot springs.

Pearson A, Huang Z, Ingalls AE, Romanek CS, Wiegel J, Freeman KH, Smittenberg RH, Zhang CL.

Appl Environ Microbiol. 2004 Sep;70(9):5229-37.

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