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Items: 1 to 50 of 72

1.

RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications.

Incarnato D, Morandi E, Simon LM, Oliviero S.

Nucleic Acids Res. 2018 Sep 19;46(16):e97. doi: 10.1093/nar/gky486.

PMID:
29893890
2.

Soluble Neuregulin1 Down-Regulates Myelination Genes in Schwann Cells.

El Soury M, Fornasari BE, Morano M, Grazio E, Ronchi G, Incarnato D, Giacobini M, Geuna S, Provero P, Gambarotta G.

Front Mol Neurosci. 2018 May 14;11:157. doi: 10.3389/fnmol.2018.00157. eCollection 2018.

3.

Cytogenetic tests reveal no toxicity in lymphocytes of rabbit (Oryctolagus cuniculus, 2n=44) feed in presence of verbascoside and/or lycopene.

Perucatti A, Genualdo V, Pauciullo A, Iorio C, Incarnato D, Rossetti C, Vizzarri F, Palazzo M, Casamassima D, Iannuzzi L, Iannuzzi A.

Food Chem Toxicol. 2018 Apr;114:311-315. doi: 10.1016/j.fct.2018.02.053. Epub 2018 Feb 26.

PMID:
29496527
4.

Role of CD133 Molecule in Wnt Response and Renal Repair.

Brossa A, Papadimitriou E, Collino F, Incarnato D, Oliviero S, Camussi G, Bussolati B.

Stem Cells Transl Med. 2018 Mar;7(3):283-294. doi: 10.1002/sctm.17-0158. Epub 2018 Feb 12.

5.

SiO2 nanoparticles modulate the electrical activity of neuroendocrine cells without exerting genomic effects.

Distasi C, Ruffinatti FA, Dionisi M, Antoniotti S, Gilardino A, Croci G, Riva B, Bassino E, Alberto G, Castroflorio E, Incarnato D, Morandi E, Martra G, Oliviero S, Munaron L, Lovisolo D.

Sci Rep. 2018 Feb 9;8(1):2760. doi: 10.1038/s41598-018-21157-8.

6.

In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding.

Incarnato D, Morandi E, Anselmi F, Simon LM, Basile G, Oliviero S.

Nucleic Acids Res. 2017 Sep 19;45(16):9716-9725. doi: 10.1093/nar/gkx617.

7.

MicroRNAs-143 and -145 induce epithelial to mesenchymal transition and modulate the expression of junction proteins.

Avalle L, Incarnato D, Savino A, Gai M, Marino F, Pensa S, Barbieri I, Stadler MB, Provero P, Oliviero S, Poli V.

Cell Death Differ. 2017 Oct;24(10):1750-1760. doi: 10.1038/cdd.2017.103. Epub 2017 Jun 23.

8.

Intragenic DNA methylation prevents spurious transcription initiation.

Neri F, Rapelli S, Krepelova A, Incarnato D, Parlato C, Basile G, Maldotti M, Anselmi F, Oliviero S.

Nature. 2017 Mar 2;543(7643):72-77. doi: 10.1038/nature21373. Epub 2017 Feb 22.

9.

High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues.

Incarnato D, Anselmi F, Morandi E, Neri F, Maldotti M, Rapelli S, Parlato C, Basile G, Oliviero S.

Nucleic Acids Res. 2017 Feb 17;45(3):1433-1441. doi: 10.1093/nar/gkw810.

10.

Mutations in NOTCH1 PEST domain orchestrate CCL19-driven homing of chronic lymphocytic leukemia cells by modulating the tumor suppressor gene DUSP22.

Arruga F, Gizdic B, Bologna C, Cignetto S, Buonincontri R, Serra S, Vaisitti T, Gizzi K, Vitale N, Garaffo G, Mereu E, Diop F, Neri F, Incarnato D, Coscia M, Allan J, Piva R, Oliviero S, Furman RR, Rossi D, Gaidano G, Deaglio S.

Leukemia. 2017 Sep;31(9):1882-1893. doi: 10.1038/leu.2016.383. Epub 2016 Dec 26.

PMID:
28017968
11.

The RNA Epistructurome: Uncovering RNA Function by Studying Structure and Post-Transcriptional Modifications.

Incarnato D, Oliviero S.

Trends Biotechnol. 2017 Apr;35(4):318-333. doi: 10.1016/j.tibtech.2016.11.002. Epub 2016 Dec 14. Review.

PMID:
27988057
12.

Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae).

Lighten J, Incarnato D, Ward BJ, van Oosterhout C, Bradbury I, Hanson M, Bentzen P.

R Soc Open Sci. 2016 Oct 26;3(10):160299. eCollection 2016 Oct.

13.

The long intergenic non-coding RNA CCR492 functions as a let-7 competitive endogenous RNA to regulate c-Myc expression.

Maldotti M, Incarnato D, Neri F, Krepelova A, Rapelli S, Anselmi F, Parlato C, Basile G, Dettori D, Calogero R, Oliviero S.

Biochim Biophys Acta. 2016 Oct;1859(10):1322-32. doi: 10.1016/j.bbagrm.2016.06.010. Epub 2016 Jun 23.

14.

Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis.

Neri F, Incarnato D, Krepelova A, Parlato C, Oliviero S.

Nat Protoc. 2016 Jul;11(7):1191-205. doi: 10.1038/nprot.2016.063. Epub 2016 Jun 9.

15.

RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data.

Incarnato D, Neri F, Anselmi F, Oliviero S.

Bioinformatics. 2016 Feb 1;32(3):459-61. doi: 10.1093/bioinformatics/btv571. Epub 2015 Oct 19.

16.

High-throughput whole-genome sequencing of E14 mouse embryonic stem cells.

Incarnato D, Neri F.

Genom Data. 2014 Nov 7;3:6-7. doi: 10.1016/j.gdata.2014.10.023. eCollection 2015 Mar.

17.

DNA methylation and demethylation dynamics.

Neri F, Incarnato D, Oliviero S.

Oncotarget. 2015 Oct 27;6(33):34049-50. doi: 10.18632/oncotarget.6039. No abstract available.

18.

Fatal Outcome in a Newborn Calf Associated with Partial Trisomy 25q and Partial Monosomy 11q, 60,XX,der(11)t(11;25)(q11;q14∼21).

Iannuzzi A, Genualdo V, Perucatti A, Pauciullo A, Varricchio G, Incarnato D, Matassino D, Iannuzzi L.

Cytogenet Genome Res. 2015;146(3):222-9. doi: 10.1159/000438973. Epub 2015 Aug 26.

19.

Analysis of chromosome damage by sister chromatid exchange (SCE) and redox homeostasis characterization on sheep flocks from Sardinian pasturelands.

Genualdo V, Perucatti A, Pauciullo A, Iannuzzi A, Incarnato D, Spagnuolo MS, Solinas N, Bullitta S, Iannuzzi L.

Sci Total Environ. 2015 Sep 15;527-528:393-400. doi: 10.1016/j.scitotenv.2015.05.021. Epub 2015 May 15.

PMID:
25984702
20.

TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues.

Neri F, Incarnato D, Krepelova A, Dettori D, Rapelli S, Maldotti M, Parlato C, Anselmi F, Galvagni F, Oliviero S.

Nucleic Acids Res. 2015 Aug 18;43(14):6814-26. doi: 10.1093/nar/gkv392. Epub 2015 Apr 29.

21.

AKI Recovery Induced by Mesenchymal Stromal Cell-Derived Extracellular Vesicles Carrying MicroRNAs.

Collino F, Bruno S, Incarnato D, Dettori D, Neri F, Provero P, Pomatto M, Oliviero S, Tetta C, Quesenberry PJ, Camussi G.

J Am Soc Nephrol. 2015 Oct;26(10):2349-60. doi: 10.1681/ASN.2014070710. Epub 2015 Apr 21.

22.

Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics.

Neri F, Incarnato D, Krepelova A, Rapelli S, Anselmi F, Parlato C, Medana C, Dal Bello F, Oliviero S.

Cell Rep. 2015 Feb 4. pii: S2211-1247(15)00009-1. doi: 10.1016/j.celrep.2015.01.008. [Epub ahead of print]

23.

TET1 is a tumour suppressor that inhibits colon cancer growth by derepressing inhibitors of the WNT pathway.

Neri F, Dettori D, Incarnato D, Krepelova A, Rapelli S, Maldotti M, Parlato C, Paliogiannis P, Oliviero S.

Oncogene. 2015 Aug 6;34(32):4168-76. doi: 10.1038/onc.2014.356. Epub 2014 Nov 3.

24.

Sequential cross-species chromosome painting among river buffalo, cattle, sheep and goat: a useful tool for chromosome abnormalities diagnosis within the family Bovidae.

Pauciullo A, Perucatti A, Cosenza G, Iannuzzi A, Incarnato D, Genualdo V, Di Berardino D, Iannuzzi L.

PLoS One. 2014 Oct 17;9(10):e110297. doi: 10.1371/journal.pone.0110297. eCollection 2014.

25.
26.

Susceptibility allele-specific loss of miR-1324-mediated silencing of the INO80B chromatin-assembly complex gene in pre-eclampsia.

Oudejans CB, Michel OJ, Janssen R, Habets R, Poutsma A, Sistermans EA, Weiss MM, Incarnato D, Oliviero S, Kleiverda G, Van Dijk M, Arngrímsson R.

Hum Mol Genet. 2015 Jan 1;24(1):118-27. doi: 10.1093/hmg/ddu423. Epub 2014 Aug 20.

27.

High-throughput single nucleotide variant discovery in E14 mouse embryonic stem cells provides a new reference genome assembly.

Incarnato D, Krepelova A, Neri F.

Genomics. 2014 Aug;104(2):121-7. doi: 10.1016/j.ygeno.2014.06.007. Epub 2014 Jul 5.

28.

The utility of chromosome microdissection in clinical cytogenetics: a new reciprocal translocation in sheep.

Iannuzzi A, Perucatti A, Genualdo V, Pauciullo A, Incarnato D, Musilova P, Rubes J, Iannuzzi C.

Cytogenet Genome Res. 2014;142(3):174-8. doi: 10.1159/000361000. Epub 2014 Apr 9.

29.

Development of a sequential multicolor-FISH approach with 13 chromosome-specific painting probes for the rapid identification of river buffalo (Bubalus bubalis, 2n = 50) chromosomes.

Pauciullo A, Perucatti A, Iannuzzi A, Incarnato D, Genualdo V, Di Berardino D, Iannuzzi L.

J Appl Genet. 2014 Aug;55(3):397-401. doi: 10.1007/s13353-014-0207-z. Epub 2014 Mar 25.

30.

Whole gene expression profile in blood reveals multiple pathways deregulation in R6/2 mouse model.

Diamanti D, Mori E, Incarnato D, Malusa F, Fondelli C, Magnoni L, Pollio G.

Biomark Res. 2013 Oct 23;1(1):28. doi: 10.1186/2050-7771-1-28.

31.

Dnmt3L antagonizes DNA methylation at bivalent promoters and favors DNA methylation at gene bodies in ESCs.

Neri F, Krepelova A, Incarnato D, Maldotti M, Parlato C, Galvagni F, Matarese F, Stunnenberg HG, Oliviero S.

Cell. 2013 Sep 26;155(1):121-34. doi: 10.1016/j.cell.2013.08.056.

32.

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells.

Neri F, Incarnato D, Krepelova A, Rapelli S, Pagnani A, Zecchina R, Parlato C, Oliviero S.

Genome Biol. 2013 Aug 29;14(8):R91. doi: 10.1186/gb-2013-14-8-r91.

33.

MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets.

Incarnato D, Neri F, Diamanti D, Oliviero S.

Nucleic Acids Res. 2013 Oct;41(18):8421-33. doi: 10.1093/nar/gkt629. Epub 2013 Jul 17.

34.

FOSL1 controls the assembly of endothelial cells into capillary tubes by direct repression of αv and β3 integrin transcription.

Evellin S, Galvagni F, Zippo A, Neri F, Orlandini M, Incarnato D, Dettori D, Neubauer S, Kessler H, Wagner EF, Oliviero S.

Mol Cell Biol. 2013 Mar;33(6):1198-209. doi: 10.1128/MCB.01054-12. Epub 2013 Jan 14.

35.

Extended cytogenetic maps of sheep chromosome 1 and their cattle and river buffalo homoeologues: comparison with the OAR1 RH map and human chromosomes 2, 3, 21 and 1q.

Di Meo GP, Goldammer T, Perucatti A, Genualdo V, Iannuzzi A, Incarnato D, Rebl A, Di Berardino D, Iannuzzi L.

Cytogenet Genome Res. 2011;133(1):16-24. doi: 10.1159/000323796. Epub 2011 Jan 29.

PMID:
21282943
36.

A rare case of centric fission and fusion in a river buffalo (Bubalus bubalis, 2n = 50) cow with reduced fertility.

Di Meo GP, Perucatti A, Genualdo V, Iannuzzi A, Sarubbi F, Caputi-Jambrenghi A, Incarnato D, Peretti V, Vonghia G, Iannuzzi L.

Cytogenet Genome Res. 2011;132(1-2):26-30. doi: 10.1159/000318011. Epub 2010 Aug 7.

PMID:
20693780
37.

Numerical sex chromosome aberrations and abnormal sex development in horse and sheep.

Di Meo GP, Neglia G, Perucatti A, Genualdo V, Iannuzzi A, Crocco D, Incarnato D, Romano G, Parma P, Iannuzzi L.

Sex Dev. 2009;3(6):329-32. doi: 10.1159/000279289. Epub 2010 Jan 27.

PMID:
20110649
38.

The 450-band resolution G- and R-banded standard karyotype of the donkey (Equus asinus, 2n = 62).

Di Meo GP, Perucatti A, Peretti V, Incarnato D, Ciotola F, Liotta L, Raudsepp T, Di Berardino D, Chowdhary B, Iannuzzi L.

Cytogenet Genome Res. 2009;125(4):266-71. doi: 10.1159/000235932. Epub 2009 Oct 27.

PMID:
19864889
39.

FISH-mapping comparison between river buffalo chromosome 7 and sheep chromosome 6: assignment of new loci and comparison with HSA4.

Perucatti A, Di Meo GP, Goldammer T, Incarnato D, Nicolae I, Brunner R, Iannuzzi L.

Cytogenet Genome Res. 2009;124(1):106-11. doi: 10.1159/000200095. Epub 2009 Apr 15.

PMID:
19372676
40.

An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes.

Di Meo GP, Perucatti A, Floriot S, Hayes H, Schibler L, Incarnato D, Di Berardino D, Williams J, Cribiu E, Eggen A, Iannuzzi L.

Chromosome Res. 2008;16(6):827-37. doi: 10.1007/s10577-008-1229-3. Epub 2008 Jul 26.

PMID:
18685962
41.

Comparative FISH-mapping of twelve loci in river buffalo and sheep chromosomes: comparison with HSA8p and HSA4q.

Perucatti A, Di Meo GP, Goldammer T, Incarnato D, Brunner R, Iannuzzi L.

Cytogenet Genome Res. 2007;119(3-4):242-4. doi: 10.1159/000112068. Epub 2008 Feb 1.

PMID:
18253036
42.

An advanced sheep (Ovis aries, 2n = 54) cytogenetic map and assignment of 88 new autosomal loci by fluorescence in situ hybridization and R-banding.

Di Meo GP, Perucatti A, Floriot S, Hayes H, Schibler L, Rullo R, Incarnato D, Ferretti L, Cockett N, Cribiu E, Williams JL, Eggen A, Iannuzzi L.

Anim Genet. 2007 Jun;38(3):233-40. Epub 2007 Apr 13.

43.

A new case of reciprocal translocation in a young bull: rcp(11;21)(q28;q12).

Molteni L, Perucatti A, Iannuzzi A, Di Meo GP, De Lorenzi L, De Giovanni A, Incarnato D, Succi G, Cribiu E, Eggen A, Iannuzzi L.

Cytogenet Genome Res. 2007;116(1-2):80-4.

PMID:
17268182
44.

FISH-mapping of LEP and SLC26A2 genes in sheep, goat and cattle R-banded chromosomes: comparison between bovine, ovine and caprine chromosome 4 (BTA4/OAR4/CHI4) and human chromosome 7 (HSA7).

Perucatti A, Di Meo GP, Vallinoto M, Kierstein G, Schneider MP, Incarnato D, Caputi Jambrenghi A, Mohammadi G, Vonghia G, Silva A, Brenig B, Iannuzzi L.

Cytogenet Genome Res. 2006;115(1):7-9.

PMID:
16974077
45.

Cattle rob(1;29) originating from complex chromosome rearrangements as revealed by both banding and FISH-mapping techniques.

Di Meo GP, Perucatti A, Chaves R, Adega F, De Lorenzi L, Molteni L, De Giovanni A, Incarnato D, Guedes-Pinto H, Eggen A, Iannuzzi L.

Chromosome Res. 2006;14(6):649-55. Epub 2006 Sep 14.

PMID:
16964571
46.

Mapping of 11 genes by FISH to BTA2, BBU2q, OAR2q and CHI2, and comparison with HSA2q.

Di Meo GP, Gallagher D, Perucatti A, Wu X, Incarnato D, Mohammadi G, Taylor JF, Iannuzzi L.

Anim Genet. 2006 Jun;37(3):299-300. No abstract available.

PMID:
16734702
47.

Construction of a medium-density horse gene map.

Perrocheau M, Boutreux V, Chadi S, Mata X, Decaunes P, Raudsepp T, Durkin K, Incarnato D, Iannuzzi L, Lear TL, Hirota K, Hasegawa T, Zhu B, de Jong P, Cribiu EP, Chowdhary BP, Guérin G.

Anim Genet. 2006 Apr;37(2):145-55.

PMID:
16573529
48.

Increased frequencies of both chromosome abnormalities and SCEs in two sheep flocks exposed to high dioxin levels during pasturage.

Perucatti A, Di Meo GP, Albarella S, Ciotola F, Incarnato D, Jambrenghi AC, Peretti V, Vonghia G, Iannuzzi L.

Mutagenesis. 2006 Jan;21(1):67-75. Epub 2006 Jan 24.

PMID:
16434450
49.

Comparative FISH mapping of mucin 1, transmembrane (MUC1) among cattle, river buffalo, sheep and goat chromosomes: comparison between bovine chromosome 3 and human chromosome 1.

Perucatti A, Floriot S, Di Meo GP, Soglia D, Rullo R, Maione S, Incarnato D, Eggen A, Sacchi P, Rasero R, Iannuzzi L.

Cytogenet Genome Res. 2006;112(1-2):103-5.

PMID:
16276097
50.

Equine FISH mapping of 36 genes known to locate on human chromosome ends.

Perrocheau M, Boutreux V, Chadi-Taourit S, Di Meo GP, Perucatti A, Incarnato D, Cribiu EP, Guérin G, Iannuzzi L.

Cytogenet Genome Res. 2005;111(1):46-50.

PMID:
16093720

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