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Items: 1 to 50 of 60

1.

A novel handling-free method of mounting single protein crystals for synchrotron structure analyses at room temperature.

Suzuki Y, Torii K, Inaka K, Fujiwara T, Tanaka H, Arai Y.

Rev Sci Instrum. 2019 May;90(5):054101. doi: 10.1063/1.5070122.

PMID:
31153273
2.

Characterization of crystal water molecules in a high-affinity inhibitor and hematopoietic prostaglandin D synthase complex by interaction energy studies.

Takaya D, Inaka K, Omura A, Takenuki K, Kawanishi M, Yabuki Y, Nakagawa Y, Tsuganezawa K, Ogawa N, Watanabe C, Honma T, Aritake K, Urade Y, Shirouzu M, Tanaka A.

Bioorg Med Chem. 2018 Sep 1;26(16):4726-4734. doi: 10.1016/j.bmc.2018.08.014. Epub 2018 Aug 11.

PMID:
30121213
3.

Crystallization of Human Erythrocyte Band 3, the anion exchanger, at the International Space Station "KIBO".

Hatae H, Inaka K, Okamura R, Furubayashi N, Kamo M, Kobayashi T, Abe Y, Iwata S, Hamasaki N.

Anal Biochem. 2018 Oct 15;559:91-93. doi: 10.1016/j.ab.2018.08.009. Epub 2018 Aug 15.

PMID:
30118660
4.

Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery.

Itoh T, Hibi T, Suzuki F, Sugimoto I, Fujiwara A, Inaka K, Tanaka H, Ohta K, Fujii Y, Taketo A, Kimoto H.

PLoS One. 2016 Dec 1;11(12):e0167310. doi: 10.1371/journal.pone.0167310. eCollection 2016.

5.

"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.

Nakamura A, Ishida T, Kusaka K, Yamada T, Fushinobu S, Tanaka I, Kaneko S, Ohta K, Tanaka H, Inaka K, Higuchi Y, Niimura N, Samejima M, Igarashi K.

Sci Adv. 2015 Aug 21;1(7):e1500263. doi: 10.1126/sciadv.1500263. eCollection 2015 Aug.

6.

Crystallographic analysis of FAD-dependent glucose dehydrogenase.

Komori H, Inaka K, Furubayashi N, Honda M, Higuchi Y.

Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):1017-9. doi: 10.1107/S2053230X15010742. Epub 2015 Jul 28.

7.

Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.

Sakamoto Y, Suzuki Y, Iizuka I, Tateoka C, Roppongi S, Fujimoto M, Inaka K, Tanaka H, Yamada M, Ohta K, Gouda H, Nonaka T, Ogasawara W, Tanaka N.

Sci Rep. 2015 Jun 9;5:11151. doi: 10.1038/srep11151.

8.

Insights into the Proton Transfer Mechanism of a Bilin Reductase PcyA Following Neutron Crystallography.

Unno M, Ishikawa-Suto K, Kusaka K, Tamada T, Hagiwara Y, Sugishima M, Wada K, Yamada T, Tomoyori K, Hosoya T, Tanaka I, Niimura N, Kuroki R, Inaka K, Ishihara M, Fukuyama K.

J Am Chem Soc. 2015 Apr 29;137(16):5452-60. doi: 10.1021/jacs.5b00645. Epub 2015 Apr 15.

PMID:
25872660
9.

S46 peptidases are the first exopeptidases to be members of clan PA.

Sakamoto Y, Suzuki Y, Iizuka I, Tateoka C, Roppongi S, Fujimoto M, Inaka K, Tanaka H, Masaki M, Ohta K, Okada H, Nonaka T, Morikawa Y, Nakamura KT, Ogasawara W, Tanaka N.

Sci Rep. 2014 May 15;4:4977. doi: 10.1038/srep04977.

10.

Numerical model of protein crystal growth in a diffusive field such as the microgravity environment.

Tanaka H, Sasaki S, Takahashi S, Inaka K, Wada Y, Yamada M, Ohta K, Miyoshi H, Kobayashi T, Kamigaichi S.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):1003-9. doi: 10.1107/S0909049513022784. Epub 2013 Oct 1.

11.

High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method.

Higashiura A, Ohta K, Masaki M, Sato M, Inaka K, Tanaka H, Nakagawa A.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):989-93. doi: 10.1107/S090904951302373X. Epub 2013 Oct 5.

12.

JAXA protein crystallization in space: ongoing improvements for growing high-quality crystals.

Takahashi S, Ohta K, Furubayashi N, Yan B, Koga M, Wada Y, Yamada M, Inaka K, Tanaka H, Miyoshi H, Kobayashi T, Kamigaichi S.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):968-73. doi: 10.1107/S0909049513021596. Epub 2013 Sep 26.

13.

Phase-diagram-guided method for growth of a large crystal of glycoside hydrolase family 45 inverting cellulase suitable for neutron structural analysis.

Nakamura A, Ishida T, Fushinobu S, Kusaka K, Tanaka I, Inaka K, Higuchi Y, Masaki M, Ohta K, Kaneko S, Niimura N, Igarashi K, Samajima M.

J Synchrotron Radiat. 2013 Nov;20(Pt 6):859-63. doi: 10.1107/S0909049513020943. Epub 2013 Sep 25.

14.

Crystallization and preliminary X-ray crystallographic analysis of Pz peptidase B from Geobacillus collagenovorans MO-1.

Nakano H, Hosokawa A, Tagawa R, Inaka K, Ohta K, Nakatsu T, Kato H, Watanabe K.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jul 1;68(Pt 7):757-9. doi: 10.1107/S1744309112018969. Epub 2012 Jun 27.

15.

Structural insight into the stereoselective production of PGF2α by Old Yellow Enzyme from Trypanosoma cruzi.

Okamoto N, Yamaguchi K, Mizohata E, Tokuoka K, Uchiyama N, Sugiyama S, Matsumura H, Inaka K, Urade Y, Inoue T.

J Biochem. 2011 Nov;150(5):563-8. doi: 10.1093/jb/mvr096. Epub 2011 Aug 12.

PMID:
21840922
16.

High-Quality Protein Crystal Growth of Mouse Lipocalin-Type Prostaglandin D Synthase in Microgravity.

Inaka K, Takahashi S, Aritake K, Tsurumura T, Furubayashi N, Yan B, Hirota E, Sano S, Sato M, Kobayashi T, Yoshimura Y, Tanaka H, Urade Y.

Cryst Growth Des. 2011 Jun 1;11(6):2107-2111. Epub 2011 Apr 5.

17.

Improvement in the quality of hematopoietic prostaglandin D synthase crystals in a microgravity environment.

Tanaka H, Tsurumura T, Aritake K, Furubayashi N, Takahashi S, Yamanaka M, Hirota E, Sano S, Sato M, Kobayashi T, Tanaka T, Inaka K, Urade Y.

J Synchrotron Radiat. 2011 Jan;18(1):88-91. doi: 10.1107/S0909049510037076. Epub 2010 Nov 5.

18.

Optimization of salt concentration in PEG-based crystallization solutions.

Yamanaka M, Inaka K, Furubayashi N, Matsushima M, Takahashi S, Tanaka H, Sano S, Sato M, Kobayashi T, Tanaka T.

J Synchrotron Radiat. 2011 Jan;18(1):84-7. doi: 10.1107/S0909049510035995. Epub 2010 Nov 5.

19.

Structure of the inhibitor complex of old yellow enzyme from Trypanosoma cruzi.

Yamaguchi K, Okamoto N, Tokuoka K, Sugiyama S, Uchiyama N, Matsumura H, Inaka K, Urade Y, Inoue T.

J Synchrotron Radiat. 2011 Jan;18(1):66-9. doi: 10.1107/S0909049510033595. Epub 2010 Nov 12.

20.

High-quality crystals of human haematopoietic prostaglandin D synthase with novel inhibitors.

Takahashi S, Tsurumura T, Aritake K, Furubayashi N, Sato M, Yamanaka M, Hirota E, Sano S, Kobayashi T, Tanaka T, Inaka K, Tanaka H, Urade Y.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt 7):846-50. doi: 10.1107/S1744309110020828. Epub 2010 Jun 24.

21.

High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution.

Higashiura A, Kurakane T, Matsuda M, Suzuki M, Inaka K, Sato M, Kobayashi T, Tanaka T, Tanaka H, Fujiwara K, Nakagawa A.

Acta Crystallogr D Biol Crystallogr. 2010 Jun;66(Pt 6):698-708. doi: 10.1107/S0907444910010668. Epub 2010 May 15.

PMID:
20516622
22.

Preparation, crystallization and preliminary crystallographic analysis of old yellow enzyme from Trypanosoma cruzi.

Sugiyama S, Tokuoka K, Uchiyama N, Okamoto N, Okano Y, Matsumura H, Inaka K, Urade Y, Inoue T.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Oct 1;63(Pt 10):896-8. Epub 2007 Sep 29.

23.

Crystal structures of human dipeptidyl peptidase IV in its apo and diprotin B-complexed forms.

Hiramatsu H, Kyono K, Yamamoto A, Saeki K, Shima H, Sugiyama S, Inaka K, Shimizu R.

Acta Biochim Biophys Sin (Shanghai). 2007 May;39(5):335-43.

24.

Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions.

Tanaka H, Umehara T, Inaka K, Takahashi S, Shibata R, Bessho Y, Sato M, Sugiyama S, Fusatomi E, Terada T, Shirouzu M, Sano S, Motohara M, Kobayashi T, Tanaka T, Tanaka A, Yokoyama S.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Feb 1;63(Pt 2):69-73. Epub 2007 Jan 17.

25.

Structural and mutational analysis of Trypanosoma brucei prostaglandin H2 reductase provides insight into the catalytic mechanism of aldo-ketoreductases.

Kilunga KB, Inoue T, Okano Y, Kabututu Z, Martin SK, Lazarus M, Duszenko M, Sumii Y, Kusakari Y, Matsumura H, Kai Y, Sugiyama S, Inaka K, Inui T, Urade Y.

J Biol Chem. 2005 Jul 15;280(28):26371-82. Epub 2005 Apr 21.

26.

Effects of different anti-tau antibodies on tau fibrillogenesis: RTA-1 and RTA-2 counteract tau aggregation.

Taniguchi T, Sumida M, Hiraoka S, Tomoo K, Kakehi T, Minoura K, Sugiyama S, Inaka K, Ishida T, Saito N, Tanaka C.

FEBS Lett. 2005 Feb 28;579(6):1399-404.

27.

Numerical analysis of the depletion zone formation around a growing protein crystal.

Tanaka H, Inaka K, Sugiyama S, Takahashi S, Sano S, Sato M, Yoshitomi S.

Ann N Y Acad Sci. 2004 Nov;1027:10-9.

PMID:
15644341
28.

The crystal structure of human dipeptidyl peptidase IV (DPPIV) complex with diprotin A.

Hiramatsu H, Yamamoto A, Kyono K, Higashiyama Y, Fukushima C, Shima H, Sugiyama S, Inaka K, Shimizu R.

Biol Chem. 2004 Jun;385(6):561-4.

PMID:
15255191
29.

A simplified counter diffusion method combined with a 1D simulation program for optimizing crystallization conditions.

Tanaka H, Inaka K, Sugiyama S, Takahashi S, Sano S, Sato M, Yoshitomi S.

J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):45-8. Epub 2003 Nov 28.

PMID:
14646131
30.

The structure and function of human dipeptidyl peptidase IV, possessing a unique eight-bladed beta-propeller fold.

Hiramatsu H, Kyono K, Higashiyama Y, Fukushima C, Shima H, Sugiyama S, Inaka K, Yamamoto A, Shimizu R.

Biochem Biophys Res Commun. 2003 Mar 21;302(4):849-54.

PMID:
12646248
31.

Crystallization and preliminary X-ray study of human dipeptidyl peptidase IV (DPPIV).

Hiramatsu H, Kyono K, Shima H, Fukushima C, Sugiyama S, Inaka K, Yamamoto A, Shimizu R.

Acta Crystallogr D Biol Crystallogr. 2003 Mar;59(Pt 3):595-6. Epub 2003 Feb 21.

PMID:
12595736
32.

Characterization of the dihydroorotate dehydrogenase as a soluble fumarate reductase in Trypanosoma cruzi.

Takashima E, Inaoka DK, Osanai A, Nara T, Odaka M, Aoki T, Inaka K, Harada S, Kita K.

Mol Biochem Parasitol. 2002 Jul;122(2):189-200.

PMID:
12106873
33.

Crystal structure of a mutant human lysozyme with a substituted disulfide bond.

Inaka K, Kanaya E, Kikuchi M, Miki K.

Proteins. 2001 Jun 1;43(4):413-9.

PMID:
11340658
34.

Effect of an alternative disulfide bond on the structure, stability, and folding of human lysozyme.

Arai M, Hamel P, Kanaya E, Inaka K, Miki K, Kikuchi M, Kuwajima K.

Biochemistry. 2000 Mar 28;39(12):3472-9.

PMID:
10727242
35.

An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2.

Kita A, Kita S, Fujisawa I, Inaka K, Ishida T, Horiike K, Nozaki M, Miki K.

Structure. 1999 Jan 15;7(1):25-34.

36.

Crystal structure of DNA photolyase from Anacystis nidulans.

Tamada T, Kitadokoro K, Higuchi Y, Inaka K, Yasui A, de Ruiter PE, Eker AP, Miki K.

Nat Struct Biol. 1997 Nov;4(11):887-91.

PMID:
9360600
37.

Crystallization and preliminary X-ray diffraction studies of expressed Pseudomonas putida catechol 2,3-dioxygenase.

Kita A, Kita S, Inaka K, Ishida T, Horiike K, Nozaki M, Miki K.

J Biochem. 1997 Jul;122(1):201-4.

38.

Preliminary X-ray diffraction study of a new crystal form of C-1027-AG, the apoprotein of the macromolecular antitumor antibiotic C-1027 from Streptomyces globisporus.

Motojima F, Inaka K, Minami Y, Otani T, Miki K.

Acta Crystallogr D Biol Crystallogr. 1995 Nov 1;51(Pt 6):1084-5.

PMID:
15299781
39.

Structure of a glutathionylated human lysozyme: a folding intermediate mimic in the formation of a disulfide bond.

Inaka K, Miki K, Kikuchi M, Taniyama Y, Matsushima M.

Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):619-25.

PMID:
15299791
40.

Structure of a conformationally constrained Arg-Gly-Asp sequence inserted into human lysozyme.

Yamada T, Song H, Inaka K, Shimada Y, Kikuchi M, Matsushima M.

J Biol Chem. 1995 Mar 17;270(11):5687-90.

42.

Crystal structure of NADH-cytochrome b5 reductase from pig liver at 2.4 A resolution.

Nishida H, Inaka K, Yamanaka M, Kaida S, Kobayashi K, Miki K.

Biochemistry. 1995 Mar 7;34(9):2763-7.

PMID:
7893687
43.
44.

Crystallization of mutant beta subunit of F1-ATPase from thermophilic Bacillus PS3.

Saika K, Inaka K, Matsui T, Yoshida M, Miki K.

J Mol Biol. 1994 Oct 7;242(5):709-11.

PMID:
7932728
45.

Preliminary X-ray crystallographic studies of photosynthetic reaction center from a thermophilic sulfur bacterium, Chromatium tepidum.

Katayama N, Kobayashi M, Motojima F, Inaka K, Nozawa T, Miki K.

FEBS Lett. 1994 Jul 11;348(2):158-60.

46.

Stabilization and enhanced enzymatic activities of a mutant human lysozyme C77/95A with a cavity space by amino acid substitution.

Yamada H, Kanaya E, Inaka K, Ueno Y, Ikehara M, Kikuchi M.

Biol Pharm Bull. 1994 Feb;17(2):192-6.

PMID:
8205114
47.
48.

Crystallization and preliminary X-ray diffraction studies of photolyase (photoreactivating enzyme) from the cyanobacterium Anacystis nidulans.

Miki K, Tamada T, Nishida H, Inaka K, Yasui A, de Ruiter PE, Eker AP.

J Mol Biol. 1993 Sep 5;233(1):167-9.

PMID:
8377184
49.

PDI and glutathione-mediated reduction of the glutathionylated variant of human lysozyme.

Hayano T, Inaka K, Otsu M, Taniyama Y, Miki K, Matsushima M, Kikuchi M.

FEBS Lett. 1993 Aug 9;328(1-2):203-8.

50.

Crystallization and preliminary X-ray diffraction studies of C-1027-AG, the apoprotein of the macromolecular antitumor antibiotic C-1027 from Streptomyces globisporus.

Briozzo P, Inaka K, Minami Y, Otani T, Miki K.

Acta Crystallogr D Biol Crystallogr. 1993 Jul 1;49(Pt 4):372-4.

PMID:
15299511

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