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Items: 1 to 50 of 435

1.

Draft Genome Sequences of Penicillium spp. from Deeply Buried Oligotrophic Marine Sediments.

Sobol MS, Hoshino T, Futagami T, Inagaki F, Kiel Reese B.

Microbiol Resour Announc. 2019 Feb 7;8(6). pii: e01613-18. doi: 10.1128/MRA.01613-18. eCollection 2019 Feb.

2.

Significant contribution of subseafloor microparticles to the global manganese budget.

Uramoto GI, Morono Y, Tomioka N, Wakaki S, Nakada R, Wagai R, Uesugi K, Takeuchi A, Hoshino M, Suzuki Y, Shiraishi F, Mitsunobu S, Suga H, Takeichi Y, Takahashi Y, Inagaki F.

Nat Commun. 2019 Feb 6;10(1):400. doi: 10.1038/s41467-019-08347-2.

3.

Generation of mesothelial progenitor-like cells from mouse-induced pluripotent stem cells.

Inagaki NF, Inagaki FF, Kokudo N, Miyajima A.

FEBS Lett. 2019 Jan 4. doi: 10.1002/1873-3468.13325. [Epub ahead of print]

PMID:
30609020
4.

Pitfalls on sample preparation for ex vivo imaging of resected cancer tissue using enzyme-activatable fluorescent probes.

Mochida A, Ogata F, Maruoka Y, Nagaya T, Okada R, Inagaki F, Fujimura D, Choyke PL, Kobayashi H.

Oncotarget. 2018 Nov 13;9(89):36039-36047. doi: 10.18632/oncotarget.26320. eCollection 2018 Nov 13.

5.

Activatable Near-Infrared Fluorescence Imaging Using PEGylated Bacteriochlorin-Based Chlorin and BODIPY-Dyads as Probes for Detecting Cancer.

Ogata F, Nagaya T, Maruoka Y, Akhigbe J, Meares A, Lucero M, Satraitis A, Fujimura D, Okada R, Inagaki F, Choyke PL, Ptaszek M, Kobayashi H.

Bioconjug Chem. 2018 Nov 26. doi: 10.1021/acs.bioconjchem.8b00820. [Epub ahead of print]

PMID:
30475591
6.

Abundance and distribution of Archaea in the subseafloor sedimentary biosphere.

Hoshino T, Inagaki F.

ISME J. 2019 Jan;13(1):227-231. doi: 10.1038/s41396-018-0253-3. Epub 2018 Aug 16.

7.

Metal-ion-induced expression of gene fragments from subseafloor micro-organisms in the Kumano forearc basin, Nankai Trough.

Wakamatsu T, Morono Y, Futagami T, Terada T, Nishikawa S, Morisawa T, Ohshita K, Inagaki F, Ashiuchi M.

J Appl Microbiol. 2018 Nov;125(5):1396-1407. doi: 10.1111/jam.14061. Epub 2018 Sep 9.

PMID:
30080957
8.

Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex.

Ijiri A, Inagaki F, Kubo Y, Adhikari RR, Hattori S, Hoshino T, Imachi H, Kawagucci S, Morono Y, Ohtomo Y, Ono S, Sakai S, Takai K, Toki T, Wang DT, Yoshinaga MY, Arnold GL, Ashi J, Case DH, Feseker T, Hinrichs KU, Ikegawa Y, Ikehara M, Kallmeyer J, Kumagai H, Lever MA, Morita S, Nakamura KI, Nakamura Y, Nishizawa M, Orphan VJ, Røy H, Schmidt F, Tani A, Tanikawa W, Terada T, Tomaru H, Tsuji T, Tsunogai U, Yamaguchi YT, Yoshida N.

Sci Adv. 2018 Jun 13;4(6):eaao4631. doi: 10.1126/sciadv.aao4631. eCollection 2018 Jun.

9.

Assessment of Capacity to Capture DNA Aerosols by Clean Filters for Molecular Biology Experiments.

Morono Y, Hoshino T, Terada T, Suzuki T, Sato T, Yuasa H, Kubota Y, Inagaki F.

Microbes Environ. 2018 Jul 4;33(2):222-226. doi: 10.1264/jsme2.ME18012. Epub 2018 Jun 16.

10.

D:L-Amino Acid Modeling Reveals Fast Microbial Turnover of Days to Months in the Subsurface Hydrothermal Sediment of Guaymas Basin.

Møller MH, Glombitza C, Lever MA, Deng L, Morono Y, Inagaki F, Doll M, Su CC, Lomstein BA.

Front Microbiol. 2018 May 15;9:967. doi: 10.3389/fmicb.2018.00967. eCollection 2018.

11.

Activation of disulfide bond cleavage triggered by hydrophobization and lipophilization of functionalized dihydroasparagusic acid.

Inagaki F, Momose M, Maruyama N, Matsuura K, Matsunaga T, Mukai C.

Org Biomol Chem. 2018 Jun 13;16(23):4320-4324. doi: 10.1039/c8ob01055b.

PMID:
29808899
12.

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

Nunoura T, Nishizawa M, Hirai M, Shimamura S, Harnvoravongchai P, Koide O, Morono Y, Fukui T, Inagaki F, Miyazaki J, Takaki Y, Takai K.

Microbes Environ. 2018 Jul 4;33(2):186-194. doi: 10.1264/jsme2.ME17194. Epub 2018 May 25.

13.

Corrigendum to "Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-step Recognition" [J. Mol. Biol. 430 (3) (Feb 2, 2018) 249-257].

Yamaguchi M, Satoo K, Suzuki H, Fujioka Y, Ohsumi Y, Inagaki F, Noda NN.

J Mol Biol. 2018 Apr 27;430(9):1402. doi: 10.1016/j.jmb.2018.03.013. Epub 2018 Apr 7. No abstract available.

PMID:
29631906
14.

Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment.

Case DH, Ijiri A, Morono Y, Tavormina P, Orphan VJ, Inagaki F.

Front Microbiol. 2017 Dec 19;8:2569. doi: 10.3389/fmicb.2017.02569. eCollection 2017.

15.

Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.

Yamaguchi M, Satoo K, Suzuki H, Fujioka Y, Ohsumi Y, Inagaki F, Noda NN.

J Mol Biol. 2018 Feb 2;430(3):249-257. doi: 10.1016/j.jmb.2017.12.002. Epub 2017 Dec 10. Erratum in: J Mol Biol. 2018 Apr 6;:.

PMID:
29237558
16.

Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds.

Trembath-Reichert E, Morono Y, Ijiri A, Hoshino T, Dawson KS, Inagaki F, Orphan VJ.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9206-E9215. doi: 10.1073/pnas.1707525114. Epub 2017 Oct 3.

17.

Ynol Ethers as Ketene Equivalents in Rhodium-Catalyzed Intermolecular [5 + 2] Cycloaddition Reactions.

Wender PA, Ebner C, Fennell BD, Inagaki F, Schröder B.

Org Lett. 2017 Nov 3;19(21):5810-5813. doi: 10.1021/acs.orglett.7b02765.

18.
19.

Archaeal MutS5 tightly binds to Holliday junction similarly to eukaryotic MutSγ.

Ohshita K, Fukui K, Sato M, Morisawa T, Hakumai Y, Morono Y, Inagaki F, Yano T, Ashiuchi M, Wakamatsu T.

FEBS J. 2017 Oct;284(20):3470-3483. doi: 10.1111/febs.14204. Epub 2017 Sep 4.

20.

Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars.

Suzuki S, Ishii S, Hoshino T, Rietze A, Tenney A, Morrill PL, Inagaki F, Kuenen JG, Nealson KH.

ISME J. 2017 Nov;11(11):2584-2598. doi: 10.1038/ismej.2017.111. Epub 2017 Jul 21.

21.

Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes.

Hoshino T, Toki T, Ijiri A, Morono Y, Machiyama H, Ashi J, Okamura K, Inagaki F.

Front Microbiol. 2017 Jun 20;8:1135. doi: 10.3389/fmicb.2017.01135. eCollection 2017.

22.

Functional interfaces between TICAM-2/TRAM and TICAM-1/TRIF in TLR4 signaling.

Funami K, Matsumoto M, Oshiumi H, Inagaki F, Seya T.

Biochem Soc Trans. 2017 Aug 15;45(4):929-935. doi: 10.1042/BST20160259. Epub 2017 Jun 19. Review.

PMID:
28630139
23.

Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment.

Chen X, Andersen TJ, Morono Y, Inagaki F, Jørgensen BB, Lever MA.

Sci Rep. 2017 May 25;7(1):2400. doi: 10.1038/s41598-017-02295-x.

24.

Expression and localization of sterile alpha motif domain containing 5 is associated with cell type and malignancy of biliary tree.

Yagai T, Matsui S, Harada K, Inagaki FF, Saijou E, Miura Y, Nakanuma Y, Miyajima A, Tanaka M.

PLoS One. 2017 Apr 7;12(4):e0175355. doi: 10.1371/journal.pone.0175355. eCollection 2017.

25.

CO2-Selective Absorbents in Air: Reverse Lipid Bilayer Structure Forming Neutral Carbamic Acid in Water without Hydration.

Inagaki F, Matsumoto C, Iwata T, Mukai C.

J Am Chem Soc. 2017 Apr 5;139(13):4639-4642. doi: 10.1021/jacs.7b01049. Epub 2017 Mar 24.

PMID:
28306250
26.

Correction: Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.

Hoshino T, Inagaki F.

PLoS One. 2017 Mar 3;12(3):e0173546. doi: 10.1371/journal.pone.0173546. eCollection 2017.

27.

Distribution of anaerobic carbon monoxide dehydrogenase genes in deep subseafloor sediments.

Hoshino T, Inagaki F.

Lett Appl Microbiol. 2017 May;64(5):355-363. doi: 10.1111/lam.12727. Epub 2017 Mar 21.

PMID:
28256106
28.

Predominance of Viable Spore-Forming Piezophilic Bacteria in High-Pressure Enrichment Cultures from ~1.5 to 2.4 km-Deep Coal-Bearing Sediments below the Ocean Floor.

Fang J, Kato C, Runko GM, Nogi Y, Hori T, Li J, Morono Y, Inagaki F.

Front Microbiol. 2017 Feb 6;8:137. doi: 10.3389/fmicb.2017.00137. eCollection 2017.

29.

Vancomycin induces reactive oxygen species-dependent apoptosis via mitochondrial cardiolipin peroxidation in renal tubular epithelial cells.

Sakamoto Y, Yano T, Hanada Y, Takeshita A, Inagaki F, Masuda S, Matsunaga N, Koyanagi S, Ohdo S.

Eur J Pharmacol. 2017 Apr 5;800:48-56. doi: 10.1016/j.ejphar.2017.02.025. Epub 2017 Feb 17.

30.
31.

Endemicity of the cosmopolitan mesophilic chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents.

Mino S, Nakagawa S, Makita H, Toki T, Miyazaki J, Sievert SM, Polz MF, Inagaki F, Godfroy A, Kato S, Watanabe H, Nunoura T, Nakamura K, Imachi H, Watsuji TO, Kojima S, Takai K, Sawabe T.

ISME J. 2017 Apr;11(4):909-919. doi: 10.1038/ismej.2016.178. Epub 2017 Jan 3.

32.

Exploration of cultivable fungal communities in deep coal-bearing sediments from ∼1.3 to 2.5 km below the ocean floor.

Liu CH, Huang X, Xie TN, Duan N, Xue YR, Zhao TX, Lever MA, Hinrichs KU, Inagaki F.

Environ Microbiol. 2017 Feb;19(2):803-818. doi: 10.1111/1462-2920.13653. Epub 2017 Jan 25.

PMID:
28028923
33.

Associating Liver Partial Partition and Transileocecal Portal Vein Embolization for Staged Hepatectomy.

Sakamoto Y, Inagaki F, Omichi K, Ohkura N, Hasegawa K, Kokudo N.

Ann Surg. 2016 Dec;264(6):e21-e22. No abstract available.

PMID:
27832035
34.

Microbial Sulfate Reduction Potential in Coal-Bearing Sediments Down to ~2.5 km below the Seafloor off Shimokita Peninsula, Japan.

Glombitza C, Adhikari RR, Riedinger N, Gilhooly WP 3rd, Hinrichs KU, Inagaki F.

Front Microbiol. 2016 Oct 5;7:1576. eCollection 2016.

35.

Distinct Roles for the N- and C-terminal Regions of M-Sec in Plasma Membrane Deformation during Tunneling Nanotube Formation.

Kimura S, Yamashita M, Yamakami-Kimura M, Sato Y, Yamagata A, Kobashigawa Y, Inagaki F, Amada T, Hase K, Iwanaga T, Ohno H, Fukai S.

Sci Rep. 2016 Sep 15;6:33548. doi: 10.1038/srep33548.

36.

Biophysical characterization of drug-resistant mutants of fibroblast growth factor receptor 1.

Yoza K, Himeno R, Amano S, Kobashigawa Y, Amemiya S, Fukuda N, Kumeta H, Morioka H, Inagaki F.

Genes Cells. 2016 Oct;21(10):1049-1058. doi: 10.1111/gtc.12405. Epub 2016 Aug 25.

37.

A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments.

Natarajan VP, Zhang X, Morono Y, Inagaki F, Wang F.

Front Microbiol. 2016 Jun 23;7:986. doi: 10.3389/fmicb.2016.00986. eCollection 2016.

38.

Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates.

Yamasaki A, Watanabe Y, Adachi W, Suzuki K, Matoba K, Kirisako H, Kumeta H, Nakatogawa H, Ohsumi Y, Inagaki F, Noda NN.

Cell Rep. 2016 Jun 28;16(1):19-27. doi: 10.1016/j.celrep.2016.05.066. Epub 2016 Jun 16.

39.

Synthesis of some benzimidazole derivatives endowed with 1,2,3-triazole as potential inhibitors of hepatitis C virus.

Youssif BG, Mohamed YA, Salim MT, Inagaki F, Mukai C, Abdu-Allah HH.

Acta Pharm. 2016 Jun 1;66(2):219-31. doi: 10.1515/acph-2016-0014.

PMID:
27279065
40.

Analysis of Low-Biomass Microbial Communities in the Deep Biosphere.

Morono Y, Inagaki F.

Adv Appl Microbiol. 2016;95:149-78. doi: 10.1016/bs.aambs.2016.04.001. Epub 2016 May 11. Review.

PMID:
27261783
41.

Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions.

Yokogawa M, Tsushima T, Noda NN, Kumeta H, Enokizono Y, Yamashita K, Standley DM, Takeuchi O, Akira S, Inagaki F.

Sci Rep. 2016 Mar 1;6:22324. doi: 10.1038/srep22324.

42.

Nuclear magnetic resonance analysis of the conformational state of cancer mutant of fibroblast growth factor receptor 1 tyrosine kinase domain.

Kobashigawa Y, Amano S, Yoza K, Himeno R, Amemiya S, Morioka H, Yokogawa M, Kumeta H, Schlessinger J, Inagaki F.

Genes Cells. 2016 Apr;21(4):350-7. doi: 10.1111/gtc.12345. Epub 2016 Feb 10.

43.

Ecophysiology of Zetaproteobacteria Associated with Shallow Hydrothermal Iron-Oxyhydroxide Deposits in Nagahama Bay of Satsuma Iwo-Jima, Japan.

Hoshino T, Kuratomi T, Morono Y, Hori T, Oiwane H, Kiyokawa S, Inagaki F.

Front Microbiol. 2016 Jan 11;6:1554. doi: 10.3389/fmicb.2015.01554. eCollection 2015.

44.

Investigation of the redox-dependent modulation of structure and dynamics in human cytochrome c.

Imai M, Saio T, Kumeta H, Uchida T, Inagaki F, Ishimori K.

Biochem Biophys Res Commun. 2016 Jan 22;469(4):978-84. doi: 10.1016/j.bbrc.2015.12.079. Epub 2015 Dec 22.

PMID:
26718409
45.

Energyless CO2 Absorption, Generation, and Fixation Using Atmospheric CO2.

Inagaki F, Okada Y, Matsumoto C, Yamada M, Nakazawa K, Mukai C.

Chem Pharm Bull (Tokyo). 2016;64(1):8-13. doi: 10.1248/cpb.c15-00793. Epub 2015 Nov 20.

46.

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

Saio T, Ogura K, Kumeta H, Kobashigawa Y, Shimizu K, Yokochi M, Kodama K, Yamaguchi H, Tsujishita H, Inagaki F.

Sci Rep. 2015 Nov 19;5:16685. doi: 10.1038/srep16685.

47.

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

Nunoura T, Takaki Y, Shimamura S, Kakuta J, Kazama H, Hirai M, Masui N, Tomaru H, Morono Y, Imachi H, Inagaki F, Takai K.

Environ Microbiol. 2016 Jun;18(6):1889-906. doi: 10.1111/1462-2920.13096. Epub 2015 Dec 10.

PMID:
26486095
48.

The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy.

Yamamoto H, Shima T, Yamaguchi M, Mochizuki Y, Hoshida H, Kakuta S, Kondo-Kakuta C, Noda NN, Inagaki F, Itoh T, Akada R, Ohsumi Y.

J Biol Chem. 2015 Dec 4;290(49):29506-18. doi: 10.1074/jbc.M115.684233. Epub 2015 Oct 6.

49.

Identification of a Regulatory Acidic Motif as the Determinant of Membrane Localization of TICAM-2.

Funami K, Matsumoto M, Enokizono Y, Ishii N, Tatematsu M, Oshiumi H, Inagaki F, Seya T.

J Immunol. 2015 Nov 1;195(9):4456-65. doi: 10.4049/jimmunol.1402628. Epub 2015 Sep 25.

50.

Structural analysis of the mechanism of phosphorylation of a critical autoregulatory tyrosine residue in FGFR1 kinase domain.

Kobashigawa Y, Amano S, Yokogawa M, Kumeta H, Morioka H, Inouye M, Schlessinger J, Inagaki F.

Genes Cells. 2015 Oct;20(10):860-70. doi: 10.1111/gtc.12277. Epub 2015 Aug 24.

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