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Comprehensive phenotyping reveals interactions and functions of Arabidopsis thaliana TCP genes in yield determination.

van Es SW, van der Auweraert EB, Silveira SR, Angenent GC, van Dijk ADJ, Immink RGH.

Plant J. 2019 Jul;99(2):316-328. doi: 10.1111/tpj.14326. Epub 2019 Apr 29.


Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis.

Correa Marrero M, Immink RGH, de Ridder D, van Dijk ADJ.

Bioinformatics. 2019 Jun 1;35(12):2036-2042. doi: 10.1093/bioinformatics/bty924.


Arabidopsis thaliana ambient temperature responsive lncRNAs.

Severing E, Faino L, Jamge S, Busscher M, Kuijer-Zhang Y, Bellinazzo F, Busscher-Lange J, Fernández V, Angenent GC, Immink RGH, Pajoro A.

BMC Plant Biol. 2018 Jul 13;18(1):145. doi: 10.1186/s12870-018-1362-x.


Novel functions of the Arabidopsis transcription factor TCP5 in petal development and ethylene biosynthesis.

van Es SW, Silveira SR, Rocha DI, Bimbo A, Martinelli AP, Dornelas MC, Angenent GC, Immink RGH.

Plant J. 2018 Jun;94(5):867-879. doi: 10.1111/tpj.13904. Epub 2018 Apr 25.


Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs.

Moreno-Pachon NM, Mutimawurugo MC, Heynen E, Sergeeva L, Benders A, Blilou I, Hilhorst HWM, Immink RGH.

Plant Reprod. 2018 Jun;31(2):145-157. doi: 10.1007/s00497-017-0316-z. Epub 2017 Dec 7.


A cautionary note on the use of chromosome conformation capture in plants.

Jamge S, Stam M, Angenent GC, Immink RGH.

Plant Methods. 2017 Nov 16;13:101. doi: 10.1186/s13007-017-0251-x. eCollection 2017.


Tulipa gesneriana and Lilium longiflorum PEBP Genes and Their Putative Roles in Flowering Time Control.

Leeggangers HACF, Rosilio-Brami T, Bigas-Nadal J, Rubin N, van Dijk ADJ, Nunez de Caceres Gonzalez FF, Saadon-Shitrit S, Nijveen H, Hilhorst HWM, Immink RGH, Zaccai M.

Plant Cell Physiol. 2018 Jan 1;59(1):90-106. doi: 10.1093/pcp/pcx164.


A plant-based chemical genomics screen for the identification of flowering inducers.

Fiers M, Hoogenboom J, Brunazzi A, Wennekes T, Angenent GC, Immink RGH.

Plant Methods. 2017 Oct 3;13:78. doi: 10.1186/s13007-017-0230-2. eCollection 2017.


Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants.

Pajoro A, Severing E, Angenent GC, Immink RGH.

Genome Biol. 2017 Jun 1;18(1):102. doi: 10.1186/s13059-017-1235-x.


Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants.

Verhage L, Severing EI, Bucher J, Lammers M, Busscher-Lange J, Bonnema G, Rodenburg N, Proveniers MC, Angenent GC, Immink RG.

PLoS One. 2017 Mar 3;12(3):e0172950. doi: 10.1371/journal.pone.0172950. eCollection 2017.


Molecular Regulation of Temperature-Dependent Floral Induction in Tulipa gesneriana.

Leeggangers HA, Nijveen H, Bigas JN, Hilhorst HW, Immink RG.

Plant Physiol. 2017 Mar;173(3):1904-1919. doi: 10.1104/pp.16.01758. Epub 2017 Jan 19.


Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.

González-Grandío E, Pajoro A, Franco-Zorrilla JM, Tarancón C, Immink RG, Cubas P.

Proc Natl Acad Sci U S A. 2017 Jan 10;114(2):E245-E254. doi: 10.1073/pnas.1613199114. Epub 2016 Dec 27.


Cross-Family Transcription Factor Interactions: An Additional Layer of Gene Regulation.

Bemer M, van Dijk ADJ, Immink RGH, Angenent GC.

Trends Plant Sci. 2017 Jan;22(1):66-80. doi: 10.1016/j.tplants.2016.10.007. Epub 2016 Nov 1. Review.


Elucidating and mining the Tulipa and Lilium transcriptomes.

Moreno-Pachon NM, Leeggangers HA, Nijveen H, Severing E, Hilhorst H, Immink RG.

Plant Mol Biol. 2016 Oct;92(3):249-61. doi: 10.1007/s11103-016-0508-1. Epub 2016 Jul 7.


Low Temperature Affects Stem Cell Maintenance in Brassica oleracea Seedlings.

de Jonge J, Kodde J, Severing EI, Bonnema G, Angenent GC, Immink RG, Groot SP.

Front Plant Sci. 2016 Jun 8;7:800. doi: 10.3389/fpls.2016.00800. eCollection 2016.


Secrets of the world's most popular bedding plant unlocked.

van der Krol AR, Immink RG.

Nat Plants. 2016 May 27;2(6):16082. doi: 10.1038/nplants.2016.82. No abstract available.


Plasticity versus Adaptation of Ambient-Temperature Flowering Response.

Pajoro A, Verhage L, Immink RGH.

Trends Plant Sci. 2016 Jan;21(1):6-8. doi: 10.1016/j.tplants.2015.11.015. Epub 2015 Dec 14.


Role of alternative pre-mRNA splicing in temperature signaling.

Capovilla G, Pajoro A, Immink RG, Schmid M.

Curr Opin Plant Biol. 2015 Oct;27:97-103. doi: 10.1016/j.pbi.2015.06.016. Epub 2015 Jul 17. Review.


A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network.

Leal Valentim F, Mourik Sv, Posé D, Kim MC, Schmid M, van Ham RC, Busscher M, Sanchez-Perez GF, Molenaar J, Angenent GC, Immink RG, van Dijk AD.

PLoS One. 2015 Feb 26;10(2):e0116973. doi: 10.1371/journal.pone.0116973. eCollection 2015.


A cautionary note on the use of split-YFP/BiFC in plant protein-protein interaction studies.

Horstman A, Tonaco IA, Boutilier K, Immink RG.

Int J Mol Sci. 2014 May 30;15(6):9628-43. doi: 10.3390/ijms15069628.


Research on floral timing by ambient temperature comes into blossom.

Verhage L, Angenent GC, Immink RG.

Trends Plant Sci. 2014 Sep;19(9):583-91. doi: 10.1016/j.tplants.2014.03.009. Epub 2014 Apr 27. Review.


Phytoplasma effector SAP54 hijacks plant reproduction by degrading MADS-box proteins and promotes insect colonization in a RAD23-dependent manner.

MacLean AM, Orlovskis Z, Kowitwanich K, Zdziarska AM, Angenent GC, Immink RG, Hogenhout SA.

PLoS Biol. 2014 Apr 8;12(4):e1001835. doi: 10.1371/journal.pbio.1001835. eCollection 2014 Apr.


Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors.

Andriankaja ME, Danisman S, Mignolet-Spruyt LF, Claeys H, Kochanke I, Vermeersch M, De Milde L, De Bodt S, Storme V, Skirycz A, Maurer F, Bauer P, Mühlenbock P, Van Breusegem F, Angenent GC, Immink RG, Inzé D.

Plant Mol Biol. 2014 Jun;85(3):233-45. doi: 10.1007/s11103-014-0180-2. Epub 2014 Feb 19.


Tetramer formation in Arabidopsis MADS domain proteins: analysis of a protein-protein interaction network.

Espinosa-Soto C, Immink RG, Angenent GC, Alvarez-Buylla ER, de Folter S.

BMC Syst Biol. 2014 Jan 27;8:9. doi: 10.1186/1752-0509-8-9.


Transfer of knowledge about flowering and vegetative propagation from model species to bulbous plants.

Leeggangers HA, Moreno-Pachon N, Gude H, Immink RG.

Int J Dev Biol. 2013;57(6-8):611-20. doi: 10.1387/ijdb.130238ri. Review.


Analysis of functional redundancies within the Arabidopsis TCP transcription factor family.

Danisman S, van Dijk AD, Bimbo A, van der Wal F, Hennig L, de Folter S, Angenent GC, Immink RG.

J Exp Bot. 2013 Dec;64(18):5673-85. doi: 10.1093/jxb/ert337. Epub 2013 Oct 15.


Temperature-dependent regulation of flowering by antagonistic FLM variants.

Posé D, Verhage L, Ott F, Yant L, Mathieu J, Angenent GC, Immink RG, Schmid M.

Nature. 2013 Nov 21;503(7476):414-7. doi: 10.1038/nature12633. Epub 2013 Sep 25.


Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies.

Smaczniak C, Immink RG, Angenent GC, Kaufmann K.

Development. 2012 Sep;139(17):3081-98. doi: 10.1242/dev.074674. Review.


Characterization of SOC1's central role in flowering by the identification of its upstream and downstream regulators.

Immink RG, Posé D, Ferrario S, Ott F, Kaufmann K, Valentim FL, de Folter S, van der Wal F, van Dijk AD, Schmid M, Angenent GC.

Plant Physiol. 2012 Sep;160(1):433-49. doi: 10.1104/pp.112.202614. Epub 2012 Jul 12. Erratum in: Plant Physiol. 2013 Aug;162(4):2151.


Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically.

Danisman S, van der Wal F, Dhondt S, Waites R, de Folter S, Bimbo A, van Dijk AD, Muino JM, Cutri L, Dornelas MC, Angenent GC, Immink RG.

Plant Physiol. 2012 Aug;159(4):1511-23. doi: 10.1104/pp.112.200303. Epub 2012 Jun 20.


Predicting the impact of alternative splicing on plant MADS domain protein function.

Severing EI, van Dijk AD, Morabito G, Busscher-Lange J, Immink RG, van Ham RC.

PLoS One. 2012;7(1):e30524. doi: 10.1371/journal.pone.0030524. Epub 2012 Jan 25.


Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development.

Smaczniak C, Immink RG, Muiño JM, Blanvillain R, Busscher M, Busscher-Lange J, Dinh QD, Liu S, Westphal AH, Boeren S, Parcy F, Xu L, Carles CC, Angenent GC, Kaufmann K.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1560-5. doi: 10.1073/pnas.1112871109. Epub 2012 Jan 11.


Yeast protein-protein interaction assays and screens.

de Folter S, Immink RG.

Methods Mol Biol. 2011;754:145-65. doi: 10.1007/978-1-61779-154-3_8.


MADS: the missing link between identity and growth?

Dornelas MC, Patreze CM, Angenent GC, Immink RG.

Trends Plant Sci. 2011 Feb;16(2):89-97. doi: 10.1016/j.tplants.2010.11.003. Epub 2010 Dec 7. Review.


Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction.

van Dijk AD, Morabito G, Fiers M, van Ham RC, Angenent GC, Immink RG.

PLoS Comput Biol. 2010 Nov 24;6(11):e1001017. doi: 10.1371/journal.pcbi.1001017.


Investigation of MADS domain transcription factor dynamics in the floral meristem.

Urbanus SL, Dinh QD, Angenent GC, Immink RG.

Plant Signal Behav. 2010 Oct;5(10):1260-2. doi: 10.4161/psb.5.10.12949. Epub 2010 Oct 1.


Continuous-time modeling of cell fate determination in Arabidopsis flowers.

van Mourik S, van Dijk AD, de Gee M, Immink RG, Kaufmann K, Angenent GC, van Ham RC, Molenaar J.

BMC Syst Biol. 2010 Jul 22;4:101. doi: 10.1186/1752-0509-4-101.


Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency.

Assunção AG, Herrero E, Lin YF, Huettel B, Talukdar S, Smaczniak C, Immink RG, van Eldik M, Fiers M, Schat H, Aarts MG.

Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10296-301. doi: 10.1073/pnas.1004788107. Epub 2010 May 17.


Intercellular transport of epidermis-expressed MADS domain transcription factors and their effect on plant morphology and floral transition.

Urbanus SL, Martinelli AP, Dinh QD, Aizza LC, Dornelas MC, Angenent GC, Immink RG.

Plant J. 2010 Jul 1;63(1):60-72. doi: 10.1111/j.1365-313X.2010.04221.x. Epub 2010 Apr 2.


The 'ABC' of MADS domain protein behaviour and interactions.

Immink RG, Kaufmann K, Angenent GC.

Semin Cell Dev Biol. 2010 Feb;21(1):87-93. doi: 10.1016/j.semcdb.2009.10.004. Epub 2009 Oct 31. Review.


SEPALLATA3: the 'glue' for MADS box transcription factor complex formation.

Immink RG, Tonaco IA, de Folter S, Shchennikova A, van Dijk AD, Busscher-Lange J, Borst JW, Angenent GC.

Genome Biol. 2009 Feb 25;10(2):R24. doi: 10.1186/gb-2009-10-2-r24.


In planta localisation patterns of MADS domain proteins during floral development in Arabidopsis thaliana.

Urbanus SL, de Folter S, Shchennikova AV, Kaufmann K, Immink RG, Angenent GC.

BMC Plant Biol. 2009 Jan 12;9:5. doi: 10.1186/1471-2229-9-5.


Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control.

van Dijk AD, ter Braak CJ, Immink RG, Angenent GC, van Ham RC.

Bioinformatics. 2008 Jan 1;24(1):26-33. Epub 2007 Nov 17.


Protein interactions of MADS box transcription factors involved in flowering in Lolium perenne.

Ciannamea S, Kaufmann K, Frau M, Tonaco IA, Petersen K, Nielsen KK, Angenent GC, Immink RG.

J Exp Bot. 2006;57(13):3419-31. Epub 2006 Sep 27.


A Bsister MADS-box gene involved in ovule and seed development in petunia and Arabidopsis.

de Folter S, Shchennikova AV, Franken J, Busscher M, Baskar R, Grossniklaus U, Angenent GC, Immink RG.

Plant J. 2006 Sep;47(6):934-46. Epub 2006 Aug 22.


Characterization of the vernalization response in Lolium perenne by a cDNA microarray approach.

Ciannamea S, Busscher-Lange J, de Folter S, Angenent GC, Immink RG.

Plant Cell Physiol. 2006 Apr;47(4):481-92. Epub 2006 Jan 31.


Control of floral meristem determinacy in petunia by MADS-box transcription factors.

Ferrario S, Shchennikova AV, Franken J, Immink RG, Angenent GC.

Plant Physiol. 2006 Mar;140(3):890-8. Epub 2006 Jan 20.


In vivo imaging of MADS-box transcription factor interactions.

Tonaco IA, Borst JW, de Vries SC, Angenent GC, Immink RG.

J Exp Bot. 2006;57(1):33-42. Epub 2005 Nov 16.


High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates.

Feilner T, Hultschig C, Lee J, Meyer S, Immink RG, Koenig A, Possling A, Seitz H, Beveridge A, Scheel D, Cahill DJ, Lehrach H, Kreutzberger J, Kersten B.

Mol Cell Proteomics. 2005 Oct;4(10):1558-68. Epub 2005 Jul 11.


Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.

de Folter S, Immink RG, Kieffer M, Parenicová L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC.

Plant Cell. 2005 May;17(5):1424-33. Epub 2005 Apr 1.

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