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Items: 44

1.

Ultrahigh-throughput functional profiling of microbiota communities.

Terekhov SS, Smirnov IV, Malakhova MV, Samoilov AE, Manolov AI, Nazarov AS, Danilov DV, Dubiley SA, Osterman IA, Rubtsova MP, Kostryukova ES, Ziganshin RH, Kornienko MA, Vanyushkina AA, Bukato ON, Ilina EN, Vlasov VV, Severinov KV, Gabibov AG, Altman S.

Proc Natl Acad Sci U S A. 2018 Sep 4. pii: 201811250. doi: 10.1073/pnas.1811250115. [Epub ahead of print]

2.

Recombinant Monoclonal Antibodies for Rabies Post-exposure Prophylaxis.

Ilina EN, Larina MV, Aliev TK, Dolgikh DA, Kirpichnikov MP.

Biochemistry (Mosc). 2018 Jan;83(1):1-12. doi: 10.1134/S0006297918010017. Review.

PMID:
29534663
3.

Draft genomes of Enterococcus faecium strains isolated from human feces before and after eradication therapy against Helicobacter pylori.

Prianichnikov NA, Malakhova MV, Babenko VV, Larin AK, Olekhnovich EI, Starikova EV, Chuvelev DI, Glushchenko OE, Samoilov AE, Manolov AI, Kovarsky BA, Tyakht AV, Pavlenko AV, Ilina EN, Kostryukova ES.

Data Brief. 2017 Nov 27;16:511-514. doi: 10.1016/j.dib.2017.11.069. eCollection 2018 Feb.

4.

Inhibitory effect of streptococci on the growth of M. catarrhalis strains and the diversity of putative bacteriocin-like gene loci in the genomes of S. pneumoniae and its relatives.

Ikryannikova LN, Malakhova MV, Lominadze GG, Karpova IY, Kostryukova ES, Mayansky NA, Kruglov AN, Klimova EA, Lisitsina ES, Ilina EN, Govorun VM.

AMB Express. 2017 Dec 13;7(1):218. doi: 10.1186/s13568-017-0521-z.

5.

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease.

Dubinkina VB, Tyakht AV, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitsky EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM.

Microbiome. 2017 Oct 17;5(1):141. doi: 10.1186/s40168-017-0359-2.

6.

[Influence of cultivation conditions on the proteomic profile of Mycobacterium tuberculosis H37RV].

Bespyatykh JA, Manicheva OA, Smolyakov AV, Dogonadze MZ, Zhuravlev VY, Shitikov EA, Ilina EN.

Biomed Khim. 2017 Jul;63(4):334-340. doi: 10.18097/PBMC20176304334. Russian.

PMID:
28862605
7.

Genome analysis of E. coli isolated from Crohn's disease patients.

Rakitina DV, Manolov AI, Kanygina AV, Garushyants SK, Baikova JP, Alexeev DG, Ladygina VG, Kostryukova ES, Larin AK, Semashko TA, Karpova IY, Babenko VV, Ismagilova RK, Malanin SY, Gelfand MS, Ilina EN, Gorodnichev RB, Lisitsyna ES, Aleshkin GI, Scherbakov PL, Khalif IL, Shapina MV, Maev IV, Andreev DN, Govorun VM.

BMC Genomics. 2017 Jul 19;18(1):544. doi: 10.1186/s12864-017-3917-x.

8.

Proteomics for the Investigation of Mycobacteria.

Bespyatykh JA, Shitikov EA, Ilina EN.

Acta Naturae. 2017 Jan-Mar;9(1):15-25.

9.

Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity.

Terekhov SS, Smirnov IV, Stepanova AV, Bobik TV, Mokrushina YA, Ponomarenko NA, Belogurov AA Jr, Rubtsova MP, Kartseva OV, Gomzikova MO, Moskovtsev AA, Bukatin AS, Dubina MV, Kostryukova ES, Babenko VV, Vakhitova MT, Manolov AI, Malakhova MV, Kornienko MA, Tyakht AV, Vanyushkina AA, Ilina EN, Masson P, Gabibov AG, Altman S.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2550-2555. doi: 10.1073/pnas.1621226114. Epub 2017 Feb 15.

10.

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis.

Tyakht AV, Dubinkina VB, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitski EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM.

Data Brief. 2017 Jan 17;11:98-102. doi: 10.1016/j.dib.2017.01.008. eCollection 2017 Apr.

11.

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy.

Glushchenko OE, Samoilov AE, Olekhnovich EI, Kovarsky BA, Tyakht AV, Pavlenko AV, Babenko VV, Larin AK, Kostryukova ES, Malakhova MV, Ilina EN, Abdulkhakov RA, Safina DI, Grigoryeva TV, Abdulkhakov SR, Govorun VM.

Data Brief. 2017 Jan 17;11:68-71. doi: 10.1016/j.dib.2017.01.007. eCollection 2017 Apr.

12.

State of the Art of Chromosome 18-Centric HPP in 2016: Transcriptome and Proteome Profiling of Liver Tissue and HepG2 Cells.

Poverennaya EV, Kopylov AT, Ponomarenko EA, Ilgisonis EV, Zgoda VG, Tikhonova OV, Novikova SE, Farafonova TE, Kiseleva YY, Radko SP, Vakhrushev IV, Yarygin KN, Moshkovskii SA, Kiseleva OI, Lisitsa AV, Sokolov AS, Mazur AM, Prokhortchouk EB, Skryabin KG, Kostrjukova ES, Tyakht AV, Gorbachev AY, Ilina EN, Govorun VM, Archakov AI.

J Proteome Res. 2016 Nov 4;15(11):4030-4038. Epub 2016 Aug 29.

PMID:
27527821
13.

Correction for Sotnikova et al., Complete Genome Sequence of Mycobacterium bovis Strain BCG-1 (Russia).

Sotnikova EA, Shitikov EA, Malakhova MV, Babenko VV, Kostryukova ES, Ilina EN, Atrasheuskaya AV, Ignatyev GM, Vinokurova NV, Gorbachyov VY.

Genome Announc. 2016 Jun 2;4(3). pii: e00535-16. doi: 10.1128/genomeA.00535-16. No abstract available.

14.

[ABILITY OF STAPHYLOCOCCUS OF VARIOUS STRAINS TO CREATE BIOFILMS AND THEIR EFFECT ON HUMAN BODY CELLS].

Kornienko MA, Kopyltsov VN, Shevlyagina NV, Didenko LV, Lyubasovskaya LA, Priputnevich TV, Ilina EN.

Mol Gen Mikrobiol Virusol. 2016;34(1):18-25. Russian.

PMID:
27183717
15.

Complete Genome Sequence of Mycobacterium bovis Strain BCG-1 (Russia).

Sotnikova EA, Shitikov EA, Malakhova MV, Kostryukova ES, Ilina EN, Atrasheuskaya AV, Ignatyev GM, Vinokurova NV, Gorbachyov VY.

Genome Announc. 2016 Mar 31;4(2). pii: e00182-16. doi: 10.1128/genomeA.00182-16. Erratum in: Genome Announc. 2016;4(3). pii: e00535-16. doi: 10.1128/genomeA.00535-16.

16.

[MASS-SPECTROMETRY IN MICROBIOLOGICAL PRACTICE OF SCIENTIFIC CENTRE OF OBSTETRICS, GYNECOLOGY AND PERINATOLOGY].

Priputnevich TV, Melkumyan AR, Lyubasovskaya LA, Muravieva VV, Ilina EN, Sukhikh GT.

Zh Mikrobiol Epidemiol Immunobiol. 2016 Jan-Feb;(1):52-8. Russian.

PMID:
27029117
17.

[Metagenomic analysis of taxonomic and functional changes in gut microbiota of patients with alcoholic dependence syndrome].

Dubinkina VB, Tyakht AV, Ilina EN, Ischenko DS, Kovarsky BA, Yarygin KS, Pavlenko AV, Popenko AS, Alexeev DG, Taraskina AE, Nasyrova RF, Krupitski EM, Skorodumova LO, Larin AK, Kostryukova ES, Govorun VM.

Biomed Khim. 2015 Nov-Dec;61(6):742-9. doi: 10.18097/PBMC20156106742. Russian.

PMID:
26716747
18.

[Species Diversity of Bifidobacteria in the Intestinal Microbiota Studied Using MALDI-TOF Mass-Spectrometry].

Chaplin AV, Brzhozovskii AG, Parfenova TV, Kafarskaia LI, Volodin NN, Shkoporov AN, Ilina EN, Efimov BA.

Vestn Ross Akad Med Nauk. 2015;(4):435-40. Russian.

PMID:
26710526
19.

The mystery of the fourth clone: comparative genomic analysis of four non-typeable Streptococcus pneumoniae strains with different susceptibilities to optochin.

Ikryannikova LN, Ischenko DS, Lominadze GG, Kanygina AV, Karpova IY, Kostryukova ES, Mayansky NA, Skvortsov VS, Ilina EN, Govorun VM.

Eur J Clin Microbiol Infect Dis. 2016 Jan;35(1):119-30. doi: 10.1007/s10096-015-2516-5. Epub 2015 Nov 12.

PMID:
26563895
20.

RNA-Seq gene expression profiling of HepG2 cells: the influence of experimental factors and comparison with liver tissue.

Tyakht AV, Ilina EN, Alexeev DG, Ischenko DS, Gorbachev AY, Semashko TA, Larin AK, Selezneva OV, Kostryukova ES, Karalkin PA, Vakhrushev IV, Kurbatov LK, Archakov AI, Govorun VM.

BMC Genomics. 2014 Dec 15;15:1108. doi: 10.1186/1471-2164-15-1108.

21.

Emergence of carbapenemase-producing Gram-negative bacteria in Saint Petersburg, Russia.

Ageevets VA, Partina IV, Lisitsyna ES, Ilina EN, Lobzin YV, Shlyapnikov SA, Sidorenko SV.

Int J Antimicrob Agents. 2014 Aug;44(2):152-5. doi: 10.1016/j.ijantimicag.2014.05.004. Epub 2014 Jun 12.

PMID:
25059447
22.

Long-term dissemination of CTX-M-5-producing hypermutable Salmonella enterica serovar typhimurium sequence type 328 strains in Russia, Belarus, and Kazakhstan.

Kozyreva VK, Ilina EN, Malakhova MV, Carattoli A, Azizov IS, Tapalski DV, Kozlov RS, Edelstein MV.

Antimicrob Agents Chemother. 2014 Sep;58(9):5202-10. doi: 10.1128/AAC.02506-14. Epub 2014 Jun 23.

23.

Spoligotyping of Mycobacterium tuberculosis complex isolates using hydrogel oligonucleotide microarrays.

Bespyatykh JA, Zimenkov DV, Shitikov EA, Kulagina EV, Lapa SA, Gryadunov DA, Ilina EN, Govorun VM.

Infect Genet Evol. 2014 Aug;26:41-6. doi: 10.1016/j.meegid.2014.04.024. Epub 2014 May 9.

PMID:
24815729
24.

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology.

Chernyaeva EN, Shulgina MV, Rotkevich MS, Dobrynin PV, Simonov SA, Shitikov EA, Ischenko DS, Karpova IY, Kostryukova ES, Ilina EN, Govorun VM, Zhuravlev VY, Manicheva OA, Yablonsky PK, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, Lapidus AL, O'Brien SJ.

BMC Genomics. 2014 Apr 25;15:308. doi: 10.1186/1471-2164-15-308.

25.

Unusual large-scale chromosomal rearrangements in Mycobacterium tuberculosis Beijing B0/W148 cluster isolates.

Shitikov EA, Bespyatykh JA, Ischenko DS, Alexeev DG, Karpova IY, Kostryukova ES, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, Vishnevsky BI, Otten TF, Zhuravlev VIu, Yablonsky PK, Ilina EN, Govorun VM.

PLoS One. 2014 Jan 8;9(1):e84971. doi: 10.1371/journal.pone.0084971. eCollection 2014. Erratum in: PLoS One. 2014;9(2):e91479. Zhuravlev, Valery Y [corrected to Zhuravlev, Viacheslav Iu].

26.

Chromosome 18 transcriptoproteome of liver tissue and HepG2 cells and targeted proteome mapping in depleted plasma: update 2013.

Ponomarenko EA, Kopylov AT, Lisitsa AV, Radko SP, Kiseleva YY, Kurbatov LK, Ptitsyn KG, Tikhonova OV, Moisa AA, Novikova SE, Poverennaya EV, Ilgisonis EV, Filimonov AD, Bogolubova NA, Averchuk VV, Karalkin PA, Vakhrushev IV, Yarygin KN, Moshkovskii SA, Zgoda VG, Sokolov AS, Mazur AM, Prokhortchouck EB, Skryabin KG, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Gorbachev AY, Govorun VM, Archakov AI.

J Proteome Res. 2014 Jan 3;13(1):183-90. doi: 10.1021/pr400883x. Epub 2013 Dec 13.

PMID:
24328317
27.

Mutation in ribosomal protein S5 leads to spectinomycin resistance in Neisseria gonorrhoeae.

Ilina EN, Malakhova MV, Bodoev IN, Oparina NY, Filimonova AV, Govorun VM.

Front Microbiol. 2013 Jul 10;4:186. doi: 10.3389/fmicb.2013.00186. eCollection 2013.

28.

Comparative genomic analysis of Mycobacterium tuberculosis drug resistant strains from Russia.

Ilina EN, Shitikov EA, Ikryannikova LN, Alekseev DG, Kamashev DE, Malakhova MV, Parfenova TV, Afanas'ev MV, Ischenko DS, Bazaleev NA, Smirnova TG, Larionova EE, Chernousova LN, Beletsky AV, Mardanov AV, Ravin NV, Skryabin KG, Govorun VM.

PLoS One. 2013;8(2):e56577. doi: 10.1371/journal.pone.0056577. Epub 2013 Feb 20.

29.

Discrimination between Streptococcus pneumoniae and Streptococcus mitis based on sorting of their MALDI mass spectra.

Ikryannikova LN, Filimonova AV, Malakhova MV, Savinova T, Filimonova O, Ilina EN, Dubovickaya VA, Sidorenko SV, Govorun VM.

Clin Microbiol Infect. 2013 Nov;19(11):1066-71. doi: 10.1111/1469-0691.12113. Epub 2013 Jan 17.

30.

Multiple-locus variable number tandem repeat analysis of Neisseria gonorrhoeae isolates in Russia.

Kushnir AV, Ilina EN, Malakhova MV, Priputnevich TV, Filipenko ML.

Infect Genet Evol. 2013 Mar;14:8-14. doi: 10.1016/j.meegid.2012.11.020. Epub 2012 Dec 19.

PMID:
23257414
31.

Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells.

Zgoda VG, Kopylov AT, Tikhonova OV, Moisa AA, Pyndyk NV, Farafonova TE, Novikova SE, Lisitsa AV, Ponomarenko EA, Poverennaya EV, Radko SP, Khmeleva SA, Kurbatov LK, Filimonov AD, Bogolyubova NA, Ilgisonis EV, Chernobrovkin AL, Ivanov AS, Medvedev AE, Mezentsev YV, Moshkovskii SA, Naryzhny SN, Ilina EN, Kostrjukova ES, Alexeev DG, Tyakht AV, Govorun VM, Archakov AI.

J Proteome Res. 2013 Jan 4;12(1):123-34. doi: 10.1021/pr300821n. Epub 2012 Dec 20.

PMID:
23256950
32.

First detection of VIM-4 metallo-β-lactamase-producing Escherichia coli in Russia.

Shevchenko OV, Mudrak DY, Skleenova EY, Kozyreva VK, Ilina EN, Ikryannikova LN, Alexandrova IA, Sidorenko SV, Edelstein MV.

Clin Microbiol Infect. 2012 Jul;18(7):E214-7. doi: 10.1111/j.1469-0691.2012.03827.x. Epub 2012 Apr 4.

33.

Misidentification of alpha-hemolytic streptococci by routine tests in clinical practice.

Ikryannikova LN, Lapin KN, Malakhova MV, Filimonova AV, Ilina EN, Dubovickaya VA, Sidorenko SV, Govorun VM.

Infect Genet Evol. 2011 Oct;11(7):1709-15. doi: 10.1016/j.meegid.2011.07.010. Epub 2011 Jul 21.

PMID:
21798371
34.

Molecular surveillance of clinical Neisseria gonorrhoeae isolates in Russia.

Ilina EN, Oparina NY, Shitikov EA, Borovskaya AD, Govorun VM.

J Clin Microbiol. 2010 Oct;48(10):3681-9. doi: 10.1128/JCM.00565-10. Epub 2010 Jul 21.

35.

Application of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the study of Helicobacter pylori.

Ilina EN, Borovskaya AD, Serebryakova MV, Chelysheva VV, Momynaliev KT, Maier T, Kostrzewa M, Govorun VM.

Rapid Commun Mass Spectrom. 2010 Feb;24(3):328-34. doi: 10.1002/rcm.4394.

PMID:
20049887
36.

High interlaboratory reproducibility of matrix-assisted laser desorption ionization-time of flight mass spectrometry-based species identification of nonfermenting bacteria.

Mellmann A, Bimet F, Bizet C, Borovskaya AD, Drake RR, Eigner U, Fahr AM, He Y, Ilina EN, Kostrzewa M, Maier T, Mancinelli L, Moussaoui W, Prévost G, Putignani L, Seachord CL, Tang YW, Harmsen D.

J Clin Microbiol. 2009 Nov;47(11):3732-4. doi: 10.1128/JCM.00921-09. Epub 2009 Sep 23.

37.

Hepatitis B virus genetic typing using mass-spectrometry.

Malakhova MV, Ilina EN, Govorun VM, Shutko SA, Dudina KR, Znoyko OO, Klimova EA, Iushchuk ND.

Bull Exp Biol Med. 2009 Feb;147(2):220-5.

PMID:
19513426
39.

Direct bacterial profiling by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry for identification of pathogenic Neisseria.

Ilina EN, Borovskaya AD, Malakhova MM, Vereshchagin VA, Kubanova AA, Kruglov AN, Svistunova TS, Gazarian AO, Maier T, Kostrzewa M, Govorun VM.

J Mol Diagn. 2009 Jan;11(1):75-86. doi: 10.2353/jmoldx.2009.080079. Epub 2008 Dec 18.

40.

Mechanisms of macrolide resistance among Streptococcus pneumoniae isolates from Russia.

Reinert RR, Filimonova OY, Al-Lahham A, Grudinina SA, Ilina EN, Weigel LM, Sidorenko SV.

Antimicrob Agents Chemother. 2008 Jun;52(6):2260-2. doi: 10.1128/AAC.01270-07. Epub 2008 Mar 31.

41.

Relation between genetic markers of drug resistance and susceptibility profile of clinical Neisseria gonorrhoeae strains.

Ilina EN, Vereshchagin VA, Borovskaya AD, Malakhova MV, Sidorenko SV, Al-Khafaji NC, Kubanova AA, Govorun VM.

Antimicrob Agents Chemother. 2008 Jun;52(6):2175-82. doi: 10.1128/AAC.01420-07. Epub 2008 Mar 31.

42.

Matrix-assisted laser desorption ionization-time of flight (mass spectrometry) for hepatitis C virus genotyping.

Ilina EN, Malakhova MV, Generozov EV, Nikolaev EN, Govorun VM.

J Clin Microbiol. 2005 Jun;43(6):2810-5.

43.

Fluoroquinolone-resistant Neisseria gonorrhoeae isolates from Russia: molecular mechanisms implicated.

Vereshchagin VA, Ilina EN, Malakhova MV, Zubkov MM, Sidorenko SV, Kubanova AA, Govorun VM.

J Antimicrob Chemother. 2004 Apr;53(4):653-6. Epub 2004 Mar 3.

PMID:
14998987
44.

[Study on structural gene expression in human insulinoma].

Chekhranova MK, Shuvalova ER, Ilína EN, Pankov DIu, Diabirova SB, Pankov IuA.

Vestn Ross Akad Med Nauk. 1994;(12):17-9. Russian.

PMID:
7742651

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