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Items: 1 to 50 of 51

1.

PerMemDB: A database for eukaryotic peripheral membrane proteins.

Nastou KC, Tsaousis GN, Iconomidou VA.

Biochim Biophys Acta Biomembr. 2019 Oct 17:183076. doi: 10.1016/j.bbamem.2019.183076. [Epub ahead of print]

PMID:
31629694
2.

Targeting of copper-trafficking chaperones causes gene-specific systemic pathology in Drosophila melanogaster: prospective expansion of mutational landscapes that regulate tumor resistance to cisplatin.

Theotoki EI, Velentzas AD, Katarachia SA, Papandreou NC, Kalavros NI, Pasadaki SN, Giannopoulou AF, Giannios P, Iconomidou VA, Konstantakou EG, Anastasiadou E, Papassideri IS, Stravopodis DJ.

Biol Open. 2019 Oct 15;8(10). pii: bio046961. doi: 10.1242/bio.046961.

3.

The amyloid interactome: mapping protein aggregation.

Nastou KC, Tsiolaki PL, Iconomidou VA.

Amyloid. 2019;26(sup1):142-143. doi: 10.1080/13506129.2019.1582499. No abstract available.

PMID:
31343343
4.

Delving into the amyloidogenic core of human leukocyte chemotactic factor 2.

Tsiolaki PL, Nasi GI, Baltoumas FA, Fishman S, Tu HC, Iconomidou VA.

J Struct Biol. 2019 Sep 1;207(3):260-269. doi: 10.1016/j.jsb.2019.06.001. Epub 2019 Jun 3.

PMID:
31170474
5.

AmyCo: the amyloidoses collection.

Nastou KC, Nasi GI, Tsiolaki PL, Litou ZI, Iconomidou VA.

Amyloid. 2019 Sep;26(3):112-117. doi: 10.1080/13506129.2019.1603143. Epub 2019 May 16.

PMID:
31094220
6.

Hidden Aggregation Hot-Spots on Human Apolipoprotein E: A Structural Study.

Tsiolaki PL, Katsafana AD, Baltoumas FA, Louros NN, Iconomidou VA.

Int J Mol Sci. 2019 May 8;20(9). pii: E2274. doi: 10.3390/ijms20092274.

7.

Analysis of Single-Nucleotide Polymorphisms in Human Voltage-Gated Ion Channels.

Nastou KC, Batskinis MA, Litou ZI, Hamodrakas SJ, Iconomidou VA.

J Proteome Res. 2019 May 3;18(5):2310-2320. doi: 10.1021/acs.jproteome.9b00121. Epub 2019 Apr 1.

PMID:
30908064
8.

The gram-negative outer membrane modeler: Automated building of lipopolysaccharide-rich bacterial outer membranes in four force fields.

Baltoumas FA, Hamodrakas SJ, Iconomidou VA.

J Comput Chem. 2019 Jul 5;40(18):1727-1734. doi: 10.1002/jcc.25823. Epub 2019 Mar 19.

PMID:
30889287
9.

Novel interactions of Selenium Binding Protein family with the PICOT containing proteins AtGRXS14 and AtGRXS16 in Arabidopsis thaliana.

Valassakis C, Dervisi I, Agalou A, Papandreou N, Kapetsis G, Podia V, Haralampidis K, Iconomidou VA, Spaink HP, Roussis A.

Plant Sci. 2019 Apr;281:102-112. doi: 10.1016/j.plantsci.2019.01.021. Epub 2019 Jan 24.

PMID:
30824043
10.

Hexapeptide Tandem Repeats Dictate the Formation of Silkmoth Chorion, a Natural Protective Amyloid.

Tsiolaki PL, Louros NN, Iconomidou VA.

J Mol Biol. 2018 Oct 12;430(20):3774-3783. doi: 10.1016/j.jmb.2018.06.042. Epub 2018 Jun 28.

PMID:
29964045
11.

αCGRP, another amyloidogenic member of the CGRP family.

Tsiolaki PL, Nasi GI, Baltoumas FA, Louros NN, Magafa V, Hamodrakas SJ, Iconomidou VA.

J Struct Biol. 2018 Jul;203(1):27-36. doi: 10.1016/j.jsb.2018.02.008. Epub 2018 Mar 1.

PMID:
29501724
12.

Exploring Amyloidogenicity of Clusterin: A Structural and Bioinformatics Analysis.

Tsiolaki PL, Nastou KC, Louros NN, Hamodrakas SJ, Iconomidou VA.

Adv Exp Med Biol. 2017;989:93-107. doi: 10.1007/978-3-319-57348-9_8.

PMID:
28971419
13.

Mining databases for protein aggregation: a review.

Tsiolaki PL, Nastou KC, Hamodrakas SJ, Iconomidou VA.

Amyloid. 2017 Sep;24(3):143-152. doi: 10.1080/13506129.2017.1353966. Epub 2017 Jul 18. Review.

PMID:
28719238
14.

Tracking the amyloidogenic core of IAPP amyloid fibrils: Insights from micro-Raman spectroscopy.

Louros NN, Tsiolaki PL, Baltoumas FA, Chryssikos GD, Gionis V, Hamodrakas SJ, Iconomidou VA.

J Struct Biol. 2017 Aug;199(2):140-152. doi: 10.1016/j.jsb.2017.06.002. Epub 2017 Jun 14.

PMID:
28602716
15.

The amyloid interactome: Exploring protein aggregation.

Biza KV, Nastou KC, Tsiolaki PL, Mastrokalou CV, Hamodrakas SJ, Iconomidou VA.

PLoS One. 2017 Mar 1;12(3):e0173163. doi: 10.1371/journal.pone.0173163. eCollection 2017.

16.

Unraveling the aggregation propensity of human insulin C-peptide.

Tsiolaki PL, Louros NN, Zompra AA, Hamodrakas SJ, Iconomidou VA.

Biopolymers. 2017 Mar;108(2). doi: 10.1002/bip.22882.

PMID:
27257781
17.

Intrinsic aggregation propensity of the CsgB nucleator protein is crucial for curli fiber formation.

Louros NN, Bolas GMP, Tsiolaki PL, Hamodrakas SJ, Iconomidou VA.

J Struct Biol. 2016 Aug;195(2):179-189. doi: 10.1016/j.jsb.2016.05.012. Epub 2016 May 28.

PMID:
27245712
18.

A common 'aggregation-prone' interface possibly participates in the self-assembly of human zona pellucida proteins.

Louros NN, Chrysina ED, Baltatzis GE, Patsouris ES, Hamodrakas SJ, Iconomidou VA.

FEBS Lett. 2016 Mar;590(5):619-30. doi: 10.1002/1873-3468.12099. Epub 2016 Feb 26.

19.

A β-solenoid model of the Pmel17 repeat domain: insights to the formation of functional amyloid fibrils.

Louros NN, Baltoumas FA, Hamodrakas SJ, Iconomidou VA.

J Comput Aided Mol Des. 2016 Feb;30(2):153-64. doi: 10.1007/s10822-015-9892-x. Epub 2016 Jan 11.

PMID:
26754844
20.

Identification of an amyloid fibril forming segment of human Pmel17 repeat domain (RPT domain).

Louros NN, Iconomidou VA.

Biopolymers. 2016 Jan;106(1):133-9. doi: 10.1002/bip.22746.

PMID:
26394553
21.

Exploring the 'aggregation-prone' core of human Cystatin C: A structural study.

Tsiolaki PL, Louros NN, Hamodrakas SJ, Iconomidou VA.

J Struct Biol. 2015 Sep;191(3):272-80. doi: 10.1016/j.jsb.2015.07.013. Epub 2015 Jul 31.

PMID:
26235923
22.

Chameleon 'aggregation-prone' segments of apoA-I: A model of amyloid fibrils formed in apoA-I amyloidosis.

Louros NN, Tsiolaki PL, Griffin MD, Howlett GJ, Hamodrakas SJ, Iconomidou VA.

Int J Biol Macromol. 2015 Aug;79:711-8. doi: 10.1016/j.ijbiomac.2015.05.032. Epub 2015 Jun 3.

PMID:
26049118
23.

Structural studies and cytotoxicity assays of "aggregation-prone" IAPP(8-16) and its non-amyloidogenic variants suggest its important role in fibrillogenesis and cytotoxicity of human amylin.

Louros NN, Tsiolaki PL, Zompra AA, Pappa EV, Magafa V, Pairas G, Cordopatis P, Cheimonidou C, Trougakos IP, Iconomidou VA, Hamodrakas SJ.

Biopolymers. 2015 May;104(3):196-205. doi: 10.1002/bip.22650.

PMID:
25913357
24.

The pentapeptide LQVVR plays a pivotal role in human cystatin C fibrillization.

Tsiolaki PL, Hamodrakas SJ, Iconomidou VA.

FEBS Lett. 2015 Jan 2;589(1):159-64. doi: 10.1016/j.febslet.2014.11.041. Epub 2014 Dec 3.

25.

Structural studies of "aggregation-prone" peptide-analogues of teleostean egg chorion ZPB proteins.

Louros NN, Petronikolou N, Karamanos T, Cordopatis P, Iconomidou VA, Hamodrakas SJ.

Biopolymers. 2014 Nov;102(6):427-36. doi: 10.1002/bip.22563.

PMID:
25229478
26.

An N-terminal pro-atrial natriuretic peptide (NT-proANP) 'aggregation-prone' segment involved in isolated atrial amyloidosis.

Louros NN, Iconomidou VA, Tsiolaki PL, Chrysina ED, Baltatzis GE, Patsouris ES, Hamodrakas SJ.

FEBS Lett. 2014 Jan 3;588(1):52-7. doi: 10.1016/j.febslet.2013.10.049. Epub 2013 Nov 9.

27.

Structural analysis of peptide-analogues of human Zona Pellucida ZP1 protein with amyloidogenic properties: insights into mammalian Zona Pellucida formation.

Louros NN, Iconomidou VA, Giannelou P, Hamodrakas SJ.

PLoS One. 2013 Sep 12;8(9):e73258. doi: 10.1371/journal.pone.0073258. eCollection 2013.

28.

Identification of a novel 'aggregation-prone'/'amyloidogenic determinant' peptide in the sequence of the highly amyloidogenic human calcitonin.

Iconomidou VA, Leontis A, Hoenger A, Hamodrakas SJ.

FEBS Lett. 2013 Mar 18;587(6):569-74. doi: 10.1016/j.febslet.2013.01.031. Epub 2013 Feb 8.

29.

A consensus method for the prediction of 'aggregation-prone' peptides in globular proteins.

Tsolis AC, Papandreou NC, Iconomidou VA, Hamodrakas SJ.

PLoS One. 2013;8(1):e54175. doi: 10.1371/journal.pone.0054175. Epub 2013 Jan 10.

30.

LepChorionDB, a database of Lepidopteran chorion proteins and a set of tools useful for the identification of chorion proteins in Lepidopteran proteomes.

Giannopoulos NG, Michalopoulos I, Papandreou NC, Malatras A, Iconomidou VA, Hamodrakas SJ.

Insect Biochem Mol Biol. 2013 Feb;43(2):189-96. doi: 10.1016/j.ibmb.2012.12.001. Epub 2012 Dec 20.

PMID:
23262288
31.

The silkmoth eggshell as a natural amyloid shield for the safe development of insect oocyte and embryo: insights from studies of silkmoth chorion protein peptide-analogues of the B family.

Iconomidou VA, Cordopatis P, Hoenger A, Hamodrakas SJ.

Biopolymers. 2011;96(6):723-33. doi: 10.1002/bip.21606. Epub 2011 Feb 18.

PMID:
22252423
32.

An amyloidogenic determinant in N-terminal pro-brain natriuretic peptide (NT-proBNP): Implications for cardiac amyloidoses.

Iconomidou VA, Pheida D, Hamodraka ES, Antony C, Hoenger A, Hamodrakas SJ.

Biopolymers. 2012;98(1):67-75. doi: 10.1002/bip.21698. Epub 2011 Jul 25.

PMID:
21792845
33.

Secondary structure of chorion proteins of the Lepidoptera Pericallia ricini and Ariadne merione by ATR FT-IR and micro-Raman spectroscopy.

Srivastava AK, Iconomidou VA, Chryssikos GD, Gionis V, Kumar K, Hamodrakas SJ.

Int J Biol Macromol. 2011 Oct 1;49(3):317-22. doi: 10.1016/j.ijbiomac.2011.05.006. Epub 2011 May 19.

PMID:
21620884
34.

A possible structural model of members of the CPF family of cuticular proteins implicating binding to components other than chitin.

Papandreou NC, Iconomidou VA, Willis JH, Hamodrakas SJ.

J Insect Physiol. 2010 Oct;56(10):1420-6. doi: 10.1016/j.jinsphys.2010.04.002. Epub 2010 Apr 28.

35.

Amyloidogenic determinants are usually not buried.

Frousios KK, Iconomidou VA, Karletidi CM, Hamodrakas SJ.

BMC Struct Biol. 2009 Jul 9;9:44. doi: 10.1186/1472-6807-9-44.

36.

Prothymosin alpha immunoactive carboxyl-terminal peptide TKKQKTDEDD stimulates lymphocyte reactions, induces dendritic cell maturation and adopts a beta-sheet conformation in a sequence-specific manner.

Skopeliti M, Iconomidou VA, Derhovanessian E, Pawelec G, Voelter W, Kalbacher H, Hamodrakas SJ, Tsitsilonis OE.

Mol Immunol. 2009 Feb;46(5):784-92. doi: 10.1016/j.molimm.2008.09.014. Epub 2008 Oct 30.

PMID:
18976813
37.

Natural protective amyloids.

Iconomidou VA, Hamodrakas SJ.

Curr Protein Pept Sci. 2008 Jun;9(3):291-309. Review.

PMID:
18537684
38.

Drosophila cuticular proteins with the R&R Consensus: annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences.

Karouzou MV, Spyropoulos Y, Iconomidou VA, Cornman RS, Hamodrakas SJ, Willis JH.

Insect Biochem Mol Biol. 2007 Aug;37(8):754-60. Epub 2007 Mar 19. Erratum in: Insect Biochem Mol Biol.2008 Jun;38(6):683.

PMID:
17628275
39.

Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins.

Hamodrakas SJ, Liappa C, Iconomidou VA.

Int J Biol Macromol. 2007 Aug 1;41(3):295-300. Epub 2007 Mar 25.

PMID:
17477968
40.

Dogfish egg case structural studies by ATR FT-IR and FT-Raman spectroscopy.

Iconomidou VA, Georgaka ME, Chryssikos GD, Gionis V, Megalofonou P, Hamodrakas SJ.

Int J Biol Macromol. 2007 Jun 1;41(1):102-8. Epub 2007 Jan 19.

PMID:
17292464
41.

Amyloid fibril formation propensity is inherent into the hexapeptide tandemly repeating sequence of the central domain of silkmoth chorion proteins of the A-family.

Iconomidou VA, Chryssikos GD, Gionis V, Galanis AS, Cordopatis P, Hoenger A, Hamodrakas SJ.

J Struct Biol. 2006 Dec;156(3):480-8. Epub 2006 Sep 5.

PMID:
17056273
42.

Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle.

Iconomidou VA, Willis JH, Hamodrakas SJ.

Insect Biochem Mol Biol. 2005 Jun;35(6):553-60. Epub 2005 Mar 8.

PMID:
15857761
43.

cuticleDB: a relational database of Arthropod cuticular proteins.

Magkrioti CK, Spyropoulos IC, Iconomidou VA, Willis JH, Hamodrakas SJ.

BMC Bioinformatics. 2004 Sep 28;5:138.

44.

Amyloid fibrillogenesis of silkmoth chorion protein peptide-analogues via a liquid-crystalline intermediate phase.

Hamodrakas SJ, Hoenger A, Iconomidou VA.

J Struct Biol. 2004 Mar;145(3):226-35.

PMID:
14960373
45.

FT-Raman spectroscopy as diagnostic tool of Congo red binding to amyloids.

Iconomidou VA, Chryssikos GD, Gionis V, Hoenger A, Hamodrakas SJ.

Biopolymers. 2003;72(3):185-92.

PMID:
12722114
46.

A structural model of the chitin-binding domain of cuticle proteins.

Hamodrakas SJ, Willis JH, Iconomidou VA.

Insect Biochem Mol Biol. 2002 Nov;32(11):1577-83.

PMID:
12530225
47.

"Soft"-cuticle protein secondary structure as revealed by FT-Raman, ATR FT-IR and CD spectroscopy.

Iconomidou VA, Chryssikos GD, Gionis V, Willis JH, Hamodrakas SJ.

Insect Biochem Mol Biol. 2001 Jul 26;31(9):877-85.

PMID:
11439247
48.

Amyloid-like fibrils from an 18-residue peptide analogue of a part of the central domain of the B-family of silkmoth chorion proteins.

Iconomidou VA, Chryssikos GD, Gionis V, Vriend G, Hoenger A, Hamodrakas SJ.

FEBS Lett. 2001 Jun 22;499(3):268-73.

49.

Secondary structure of chorion proteins of the teleostean fish Dentex dentex by ATR FT-IR and FT-Raman spectroscopy.

Iconomidou VA, Chryssikos DG, Gionis V, Pavlidis MA, Paipetis A, Hamodrakas SJ.

J Struct Biol. 2000 Nov;132(2):112-22.

PMID:
11162733
50.

Amyloids protect the silkmoth oocyte and embryo.

Iconomidou VA, Vriend G, Hamodrakas SJ.

FEBS Lett. 2000 Aug 18;479(3):141-5.

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