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Deletion of Bmal1 Prevents Diet-Induced Ectopic Fat Accumulation by Controlling Oxidative Capacity in the Skeletal Muscle.

Wada T, Ichihashi Y, Suzuki E, Kosuge Y, Ishige K, Uchiyama T, Makishima M, Nakao R, Oishi K, Shimba S.

Int J Mol Sci. 2018 Sep 18;19(9). pii: E2813. doi: 10.3390/ijms19092813.


Publisher Correction: Core microbiomes for sustainable agroecosystems.

Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET.

Nat Plants. 2018 Sep;4(9):733. doi: 10.1038/s41477-018-0245-3.


Digitally designed holographic optical element for light field displays.

Jackin BJ, Jorissen L, Oi R, Wu JY, Wakunami K, Okui M, Ichihashi Y, Bekaert P, Huang YP, Yamamoto K.

Opt Lett. 2018 Aug 1;43(15):3738-3741. doi: 10.1364/OL.43.003738.


High Impact Gene Discovery: Simple Strand-Specific mRNA Library Construction and Differential Regulatory Analysis Based on Gene Co-Expression Network.

Ichihashi Y, Fukushima A, Shibata A, Shirasu K.

Methods Mol Biol. 2018;1830:163-189. doi: 10.1007/978-1-4939-8657-6_11.


Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions.

Ostria-Gallardo E, Ranjan A, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2018 Oct;220(1):278-287. doi: 10.1111/nph.15278. Epub 2018 Jun 29.


High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O.

Sato K, Kadota Y, Gan P, Bino T, Uehara T, Yamaguchi K, Ichihashi Y, Maki N, Iwahori H, Suzuki T, Shigenobu S, Shirasu K.

Genome Announc. 2018 Jun 28;6(26). pii: e00519-18. doi: 10.1128/genomeA.00519-18.


Two novel mutations of COMP in Japanese boys with pseudoachondroplasia.

Ichihashi Y, Takagi M, Ishii T, Watanabe K, Nishimura G, Hasegawa T.

Hum Genome Var. 2018 Jun 8;5:12. doi: 10.1038/s41439-018-0012-z. eCollection 2018.


Copying of holograms by spot scanning approach.

Okui M, Wakunami K, Oi R, Ichihashi Y, Jackin BJ, Yamamoto K.

Appl Opt. 2018 May 20;57(15):4117-4122. doi: 10.1364/AO.57.004117.


Core microbiomes for sustainable agroecosystems.

Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET.

Nat Plants. 2018 May;4(5):247-257. doi: 10.1038/s41477-018-0139-4. Review. Erratum in: Nat Plants. 2018 Sep;4(9):733.


Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress.

Nakayama H, Sakamoto T, Okegawa Y, Kaminoyama K, Fujie M, Ichihashi Y, Kurata T, Motohashi K, Al-Shehbaz I, Sinha N, Kimura S.

Sci Rep. 2018 Feb 19;8(1):3302. doi: 10.1038/s41598-018-21646-w.


Real-time colour hologram generation based on ray-sampling plane with multi-GPU acceleration.

Sato H, Kakue T, Ichihashi Y, Endo Y, Wakunami K, Oi R, Yamamoto K, Nakayama H, Shimobaba T, Ito T.

Sci Rep. 2018 Jan 24;8(1):1500. doi: 10.1038/s41598-018-19361-7.


Transcriptomic and Metabolomic Reprogramming from Roots to Haustoria in the Parasitic Plant, Thesium chinense.

Ichihashi Y, Kusano M, Kobayashi M, Suetsugu K, Yoshida S, Wakatake T, Kumaishi K, Shibata A, Saito K, Shirasu K.

Plant Cell Physiol. 2018 Apr 1;59(4):724-733. doi: 10.1093/pcp/pcx200.


Cover Image, Volume 176A, Number 1, January 2018.

Ikenoue S, Miyakoshi K, Ishii T, Sato Y, Otani T, Akiba Y, Kasuga Y, Ochiai D, Matsumoto T, Ichihashi Y, Matsuzaki Y, Tachikawa K, Michigami T, Nishimura G, Ikeda K, Hasegawa T, Tanaka M.

Am J Med Genet A. 2018 Jan;176(1):i. doi: 10.1002/ajmg.a.38585.


Child Abuse Prevention Team Activities in a General Hospital in Tochigi, Japan.

Kobayashi Y, Tsukui M, Ichihashi Y.

Glob Pediatr Health. 2017 Nov 30;4:2333794X17743914. doi: 10.1177/2333794X17743914. eCollection 2017. No abstract available.


Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.

Uemura A, Yamaguchi N, Xu Y, Wee W, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Ito T.

Plant Reprod. 2018 Mar;31(1):89-105. doi: 10.1007/s00497-017-0315-0. Epub 2017 Dec 7.


Discordant fetal phenotype of hypophosphatasia in two siblings.

Ikenoue S, Miyakoshi K, Ishii T, Sato Y, Otani T, Akiba Y, Kasuga Y, Ochiai D, Matsumoto T, Ichihashi Y, Matsuzaki Y, Tachikawa K, Michigami T, Nishimura G, Ikeda K, Hasegawa T, Tanaka M.

Am J Med Genet A. 2018 Jan;176(1):171-174. doi: 10.1002/ajmg.a.38531. Epub 2017 Nov 21.


[Localized Nodular Pulmonary Amyloidosis after Resection of Lung Cancer;Report of a Case].

Ochi K, Fumimoto S, Kataoka T, Ichihashi Y, Satoh K, Okada Y, Hanaoka N, Katsumata T.

Kyobu Geka. 2017 Nov;70(12):1044-1047. Japanese.


Transient Fanconi syndrome in two preterm infants with hydronephrosis and urinary tract infection.

Tominaga T, Sato T, Ichihashi Y, Amano N, Kobayashi Y, Awazu M.

CEN Case Rep. 2017 May;6(1):88-90. doi: 10.1007/s13730-017-0250-9. Epub 2017 Feb 16.


Extramedullary Plasmacytoma Arising From the Anterior Mediastinum.

Sato K, Fumimoto S, Fukada T, Ichihashi Y, Ochi K, Satomi H, Morita T, Hanaoka N, Okada Y, Katsumata T.

Ann Thorac Surg. 2017 May;103(5):e393-e395. doi: 10.1016/j.athoracsur.2016.10.064.


Discovery of Cell-Type-Specific and Disease-Related Enzymatic Activity Changes via Global Evaluation of Peptide Metabolism.

Onagi J, Komatsu T, Ichihashi Y, Kuriki Y, Kamiya M, Terai T, Ueno T, Hanaoka K, Matsuzaki H, Hata K, Watanabe T, Nagano T, Urano Y.

J Am Chem Soc. 2017 Mar 8;139(9):3465-3472. doi: 10.1021/jacs.6b11376. Epub 2017 Feb 23.


Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.

An CI, Ichihashi Y, Peng J, Sinha NR, Hagiwara N.

PLoS One. 2016 Nov 10;11(11):e0166574. doi: 10.1371/journal.pone.0166574. eCollection 2016.


Bronchial artery aneurysm suggested to be caused by metalic tracheal stent migration.

Sato K, Fumimoto S, Fukada T, Ochi K, Kataoka T, Ichihashi Y, Satomi H, Morita T, Hanaoka N, Okada Y, Katsumata T.

Surg Case Rep. 2016 Dec;2(1):125. Epub 2016 Nov 5.


Projection-type see-through holographic three-dimensional display.

Wakunami K, Hsieh PY, Oi R, Senoh T, Sasaki H, Ichihashi Y, Okui M, Huang YP, Yamamoto K.

Nat Commun. 2016 Oct 3;7:12954. doi: 10.1038/ncomms12954.


Discovery of novel 2',4'-dimethyl-[4,5'-bithiazol]-2-yl amino derivatives as orally bioavailable TRPV4 antagonists for the treatment of pain: Part 1.

Tsuno N, Yukimasa A, Yoshida O, Ichihashi Y, Inoue T, Ueno T, Yamaguchi H, Matsuda H, Funaki S, Yamanada N, Tanimura M, Nagamatsu D, Nishimura Y, Ito T, Soga M, Horita N, Yamamoto M, Hinata M, Imai M, Morioka Y, Kanemasa T, Sakaguchi G, Iso Y.

Bioorg Med Chem Lett. 2016 Oct 15;26(20):4930-4935. doi: 10.1016/j.bmcl.2016.09.013. Epub 2016 Sep 7.


A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR.

G3 (Bethesda). 2016 Oct 13;6(10):3169-3184. doi: 10.1534/g3.116.030536.


Using gene networks in EvoDevo analyses.

Sinha NR, Rowland SD, Ichihashi Y.

Curr Opin Plant Biol. 2016 Oct;33:133-139. doi: 10.1016/j.pbi.2016.06.016. Epub 2016 Jul 22. Review.


eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR.

Plant Physiol. 2016 Sep;172(1):328-40. doi: 10.1104/pp.16.00289. Epub 2016 Jul 14.


Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.

Kondo Y, Nurani AM, Saito C, Ichihashi Y, Saito M, Yamazaki K, Mitsuda N, Ohme-Takagi M, Fukuda H.

Plant Cell. 2016 Jun;28(6):1250-62. doi: 10.1105/tpc.16.00027. Epub 2016 May 18.


The Haustorium, a Specialized Invasive Organ in Parasitic Plants.

Yoshida S, Cui S, Ichihashi Y, Shirasu K.

Annu Rev Plant Biol. 2016 Apr 29;67:643-67. doi: 10.1146/annurev-arplant-043015-111702. Review.


A case of schwannoma of the mesoesophagus displaced from the left to the right of the posterior mediastinum.

Sato K, Ichihashi Y, Fumimoto S, Ochi K, Kanki S, Morita T, Hanaoka N, Katsumata T.

Gen Thorac Cardiovasc Surg. 2017 Jan;65(1):59-62. doi: 10.1007/s11748-016-0641-4. Epub 2016 Mar 19.


[A Clinical Case Report Including In Vivo Laser Confocal Microscopic Findings of Keratitis Complicated with Takayasu's Arteritis].

Matsumoto Y, Yasuoka H, Ichihashi Y, Kawakita T, Shimmura S, Tsubota K.

Nippon Ganka Gakkai Zasshi. 2016 Feb;120(2):114-9. Japanese.


Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae).

Ostria-Gallardo E, Ranjan A, Chitwood DH, Kumar R, Townsley BT, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2016 Apr;210(2):694-708. doi: 10.1111/nph.13776. Epub 2015 Dec 18.


Behavior of Leaf Meristems and Their Modification.

Ichihashi Y, Tsukaya H.

Front Plant Sci. 2015 Dec 1;6:1060. doi: 10.3389/fpls.2015.01060. eCollection 2015. Review.


Corrigendum: Stereocontrolled Synthesis of Trichodermatide A.

Shigehisa H, Suwa Y, Furiya N, Nakaya Y, Fukushima M, Ichihashi Y, Hiroya K.

Angew Chem Int Ed Engl. 2015 Oct 19;54(43):12537. doi: 10.1002/anie.201508208. No abstract available.


Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR.

Plant Physiol. 2015 Nov;169(3):2030-47. doi: 10.1104/pp.15.01229. Epub 2015 Sep 17.


Rare Pulmonary Metastasis From Thyroid Mucosa-Associated Lymphoid Tissue Lymphoma.

Satoh K, Morita T, Fumimoto S, Tsuji H, Ichihashi Y, Ochi K, Hanaoka N, Okada Y, Katsumata T.

Ann Thorac Surg. 2015 Aug;100(2):700-2. doi: 10.1016/j.athoracsur.2014.09.070.


Right intra lobar pulmonary sequestration with feeding artery arising from abdominal aorta: a case report.

Fumimoto S, Ochi K, Ichihashi Y, Sato K, Morita T, Hanaoka N, Katsumata T.

J Cardiothorac Surg. 2015 Jun 25;10:86. doi: 10.1186/s13019-015-0290-1.


BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction.

Townsley BT, Covington MF, Ichihashi Y, Zumstein K, Sinha NR.

Front Plant Sci. 2015 May 22;6:366. doi: 10.3389/fpls.2015.00366. eCollection 2015.


The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism.

Mutuku JM, Yoshida S, Shimizu T, Ichihashi Y, Wakatake T, Takahashi A, Seo M, Shirasu K.

Plant Physiol. 2015 Jul;168(3):1152-63. doi: 10.1104/pp.114.256404. Epub 2015 May 29.


Advanced dry eye screening for visual display terminal workers using functional visual acuity measurement: the Moriguchi study.

Kaido M, Kawashima M, Yokoi N, Fukui M, Ichihashi Y, Kato H, Yamatsuji M, Nishida M, Fukagawa K, Kinoshita S, Tsubota K.

Br J Ophthalmol. 2015 Nov;99(11):1488-92. doi: 10.1136/bjophthalmol-2015-306640. Epub 2015 Apr 16.


Shade avoidance components and pathways in adult plants revealed by phenotypic profiling.

Nozue K, Tat AV, Kumar Devisetty U, Robinson M, Mumbach MR, Ichihashi Y, Lekkala S, Maloof JN.

PLoS Genet. 2015 Apr 15;11(4):e1004953. doi: 10.1371/journal.pgen.1004953. eCollection 2015 Apr.


Short break-up time type dry eye has potential ocular surface abnormalities.

Ichihashi Y, Ide T, Kaido M, Ishida R, Hatou S, Tsubota K.

Taiwan J Ophthalmol. 2015 Apr-Jun;5(2):68-71. doi: 10.1016/j.tjo.2015.02.004. Epub 2015 May 4.


Possible involvement of epithelial-mesenchymal transition in fibrosis associated with IgG4-related Mikulicz's disease.

Fukui M, Ogawa Y, Shimmura S, Hatou S, Ichihashi Y, Yaguchi S, Hirayama M, Kawakita T, Tsubota K.

Mod Rheumatol. 2015 Sep;25(5):737-43. doi: 10.3109/14397595.2014.1002968. Epub 2015 Jun 12.


Screening of dry eye disease in visual display terminal workers during occupational health examinations: The Moriguchi study.

Kawashima M, Yamatsuji M, Yokoi N, Fukui M, Ichihashi Y, Kato H, Nishida M, Uchino M, Kinoshita S, Tsubota K.

J Occup Health. 2015;57(3):253-8. doi: 10.1539/joh.14-0243-OA. Epub 2015 Mar 6.


Transcriptomics exposes the uniqueness of parasitic plants.

Ichihashi Y, Mutuku JM, Yoshida S, Shirasu K.

Brief Funct Genomics. 2015 Jul;14(4):275-82. doi: 10.1093/bfgp/elv001. Epub 2015 Feb 19. Review.


An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia.

Ranjan A, Townsley BT, Ichihashi Y, Sinha NR, Chitwood DH.

PLoS Genet. 2015 Jan 8;11(1):e1004900. doi: 10.1371/journal.pgen.1004900. eCollection 2015 Jan.


Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2014 Sep;26(9):3616-29. doi: 10.1105/tpc.114.130112. Epub 2014 Sep 30.


Large size three-dimensional video by electronic holography using multiple spatial light modulators.

Sasaki H, Yamamoto K, Wakunami K, Ichihashi Y, Oi R, Senoh T.

Sci Rep. 2014 Aug 22;4:6177. doi: 10.1038/srep06177.


Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2616-21. doi: 10.1073/pnas.1402835111. Epub 2014 Jun 9.


Combination therapy with diquafosol tetrasodium and sodium hyaluronate in patients with dry eye after laser in situ keratomileusis.

Toda I, Ide T, Fukumoto T, Ichihashi Y, Tsubota K.

Am J Ophthalmol. 2014 Mar;157(3):616-22.e1. doi: 10.1016/j.ajo.2013.11.017. Epub 2013 Nov 27.


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