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Items: 1 to 50 of 80

1.

Rapid Ion Mobility Separations of Bile Acid Isomers using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations.

Chouinard CD, Nagy G, Webb IK, Garimella SVB, Baker ES, Ibrahim YM, Smith RD.

Anal Chem. 2018 Aug 13. doi: 10.1021/acs.analchem.8b02990. [Epub ahead of print]

PMID:
30102518
2.

Correction: Beneficial bacteria inhibit cachexia.

Varian BJ, Gourishetti S, Poutahidis T, Lakritz JR, Levkovich T, Kwok C, Teliousis K, Ibrahim YM, Mirabal S, Erdman SE.

Oncotarget. 2018 Jun 29;9(50):29536. doi: 10.18632/oncotarget.25750. eCollection 2018 Jun 29.

3.

An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies.

Bilbao A, Gibbons BC, Slysz GW, Crowell KL, Monroe ME, Ibrahim YM, Smith RD, Payne SH, Baker ES.

Int J Mass Spectrom. 2018 Apr;427:91-99. doi: 10.1016/j.ijms.2017.11.003. Epub 2017 Nov 6.

4.

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.

Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, Blackwell AE, Swinford G, Sausen J, Kurulugama RT, Eno N, Darland E, Stafford G, Fjeldsted J, Metz TO, Teeguarden JG, Smith RD, Baker ES.

Clin Mass Spectrom. 2016 Dec;2:1-10. doi: 10.1016/j.clinms.2016.11.002. Epub 2016 Dec 29.

5.

Comprehensive computational design of ordered peptide macrocycles.

Hosseinzadeh P, Bhardwaj G, Mulligan VK, Shortridge MD, Craven TW, Pardo-Avila F, Rettie SA, Kim DE, Silva DA, Ibrahim YM, Webb IK, Cort JR, Adkins JN, Varani G, Baker D.

Science. 2017 Dec 15;358(6369):1461-1466. doi: 10.1126/science.aap7577.

6.

A Hybrid Constant and Oscillatory Field Ion Mobility Analyzer Using Structures for Lossless Ion Manipulations.

Prabhakaran A, Hamid AM, Garimella SVB, Valenzuela BR, Ewing RG, Ibrahim YM, Smith RD.

J Am Soc Mass Spectrom. 2018 Feb;29(2):342-351. doi: 10.1007/s13361-017-1841-6. Epub 2017 Dec 12.

PMID:
29235041
7.

Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry.

Zheng X, Deng L, Baker ES, Ibrahim YM, Petyuk VA, Smith RD.

Chem Commun (Camb). 2017 Jul 11;53(56):7913-7916. doi: 10.1039/c7cc03321d.

8.

Design of a TW-SLIM Module for Dual Polarity Confinement, Transport, and Reactions.

Garimella SVB, Webb IK, Prabhakaran A, Attah IK, Ibrahim YM, Smith RD.

J Am Soc Mass Spectrom. 2017 Jul;28(7):1442-1449. doi: 10.1007/s13361-017-1680-5. Epub 2017 May 30.

9.

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.

Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO.

Bioinformatics. 2017 Sep 1;33(17):2715-2722. doi: 10.1093/bioinformatics/btx305.

10.

Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM).

Deng L, Garimella SVB, Hamid AM, Webb IK, Attah IK, Norheim RV, Prost SA, Zheng X, Sandoval JA, Baker ES, Ibrahim YM, Smith RD.

Anal Chem. 2017 Jun 20;89(12):6432-6439. doi: 10.1021/acs.analchem.7b00189. Epub 2017 May 25.

11.

Toward artifact-free data in Hadamard transform-based double multiplexing of ion mobility-Orbitrap mass spectrometry.

Tummalacherla M, Garimella SVB, Prost SA, Ibrahim YM.

Analyst. 2017 May 21;142(10):1735-1745. doi: 10.1039/c7an00289k. Epub 2017 Apr 13.

PMID:
28406514
12.

Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations.

Deng L, Webb IK, Garimella SVB, Hamid AM, Zheng X, Norheim RV, Prost SA, Anderson GA, Sandoval JA, Baker ES, Ibrahim YM, Smith RD.

Anal Chem. 2017 Apr 18;89(8):4628-4634. doi: 10.1021/acs.analchem.7b00185. Epub 2017 Apr 5.

13.

Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.

Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES.

Annu Rev Anal Chem (Palo Alto Calif). 2017 Jun 12;10(1):71-92. doi: 10.1146/annurev-anchem-061516-045212. Epub 2017 Feb 23. Review.

14.

Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry.

Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES.

J Phys Chem Lett. 2017 Apr 6;8(7):1381-1388. doi: 10.1021/acs.jpclett.6b03015. Epub 2017 Mar 15.

15.

New frontiers for mass spectrometry based upon structures for lossless ion manipulations.

Ibrahim YM, Hamid AM, Deng L, Garimella SV, Webb IK, Baker ES, Smith RD.

Analyst. 2017 Mar 27;142(7):1010-1021. doi: 10.1039/c7an00031f.

16.

Ion Elevators and Escalators in Multilevel Structures for Lossless Ion Manipulations.

Ibrahim YM, Hamid AM, Cox JT, Garimella SV, Smith RD.

Anal Chem. 2017 Feb 7;89(3):1972-1977. doi: 10.1021/acs.analchem.6b04500. Epub 2017 Jan 19.

17.

Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform.

Ibrahim YM, Garimella SV, Prost SA, Wojcik R, Norheim RV, Baker ES, Rusyn I, Smith RD.

Anal Chem. 2016 Dec 20;88(24):12152-12160. doi: 10.1021/acs.analchem.6b03027. Epub 2016 Dec 1.

PMID:
28193022
18.

Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations.

Wojcik R, Webb IK, Deng L, Garimella SV, Prost SA, Ibrahim YM, Baker ES, Smith RD.

Int J Mol Sci. 2017 Jan 18;18(1). pii: E183. doi: 10.3390/ijms18010183.

19.

Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.

Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, Smith RD, Burnum-Johnson KE, Baker ES.

Rapid Commun Mass Spectrom. 2017 Mar 15;31(5):447-456. doi: 10.1002/rcm.7808.

20.

Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming.

Garimella SV, Hamid AM, Deng L, Ibrahim YM, Webb IK, Baker ES, Prost SA, Norheim RV, Anderson GA, Smith RD.

Anal Chem. 2016 Dec 6;88(23):11877-11885. Epub 2016 Nov 17.

21.

Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations.

Deng L, Ibrahim YM, Garimella SV, Webb IK, Hamid AM, Norheim RV, Prost SA, Sandoval JA, Baker ES, Smith RD.

Anal Chem. 2016 Oct 7. [Epub ahead of print]

22.

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.

Burnum-Johnson KE, Nie S, Casey CP, Monroe ME, Orton DJ, Ibrahim YM, Gritsenko MA, Clauss TR, Shukla AK, Moore RJ, Purvine SO, Shi T, Qian W, Liu T, Baker ES, Smith RD.

Mol Cell Proteomics. 2016 Dec;15(12):3694-3705. Epub 2016 Sep 25.

23.

Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module.

Deng L, Ibrahim YM, Hamid AM, Garimella SV, Webb IK, Zheng X, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2016 Sep 20;88(18):8957-64. doi: 10.1021/acs.analchem.6b01915. Epub 2016 Aug 26.

24.

Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations.

Hamid AM, Garimella SVB, Ibrahim YM, Deng L, Zheng X, Webb IK, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2016 Sep 20;88(18):8949-8956. doi: 10.1021/acs.analchem.6b01914. Epub 2016 Aug 12.

25.

Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry.

Deng L, Ibrahim YM, Baker ES, Aly NA, Hamid AM, Zhang X, Zheng X, Garimella SVB, Webb IK, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Smith RD.

ChemistrySelect. 2016 Jul 1;1(10):2396-2399. doi: 10.1002/slct.201600460.

26.

A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation.

Webb IK, Garimella SV, Norheim RV, Baker ES, Ibrahim YM, Smith RD.

J Am Soc Mass Spectrom. 2016 Jul;27(7):1285-8. doi: 10.1007/s13361-016-1397-x. Epub 2016 Apr 20.

27.

Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry.

Garimella SV, Ibrahim YM, Tang K, Webb IK, Baker ES, Tolmachev AV, Chen TC, Anderson GA, Smith RD.

J Am Soc Mass Spectrom. 2016 Jun;27(6):1128-35. doi: 10.1007/s13361-016-1371-7. Epub 2016 Apr 6.

28.

Beneficial bacteria inhibit cachexia.

Varian BJ, Goureshetti S, Poutahidis T, Lakritz JR, Levkovich T, Kwok C, Teliousis K, Ibrahim YM, Mirabal S, Erdman SE.

Oncotarget. 2016 Mar 15;7(11):11803-16. doi: 10.18632/oncotarget.7730. Erratum in: Oncotarget. 2018 Jun 29;9(50):29536.

29.

Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations.

Chen TC, Ibrahim YM, Webb IK, Garimella SV, Zhang X, Hamid AM, Deng L, Karnesky WE, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2016 Feb 2;88(3):1728-33. doi: 10.1021/acs.analchem.5b03910. Epub 2016 Jan 21.

30.

Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry.

Kyle JE, Zhang X, Weitz KK, Monroe ME, Ibrahim YM, Moore RJ, Cha J, Sun X, Lovelace ES, Wagoner J, Polyak SJ, Metz TO, Dey SK, Smith RD, Burnum-Johnson KE, Baker ES.

Analyst. 2016 Mar 7;141(5):1649-59. doi: 10.1039/c5an02062j.

31.

Characterization of Traveling Wave Ion Mobility Separations in Structures for Lossless Ion Manipulations.

Hamid AM, Ibrahim YM, Garimella SV, Webb IK, Deng L, Chen TC, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Smith RD.

Anal Chem. 2015 Nov 17;87(22):11301-8. doi: 10.1021/acs.analchem.5b02481. Epub 2015 Oct 28.

32.

Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch.

Garimella SV, Ibrahim YM, Webb IK, Ipsen AB, Chen TC, Tolmachev AV, Baker ES, Anderson GA, Smith RD.

Analyst. 2015 Oct 21;140(20):6845-52. doi: 10.1039/c5an00844a.

33.

Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer.

Ibrahim YM, Baker ES, Danielson WF 3rd, Norheim RV, Prior DC, Anderson GA, Belov ME, Smith RD.

Int J Mass Spectrom. 2015 Feb 1;377:655-662.

34.

Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations.

Zhang X, Ibrahim YM, Chen TC, Kyle JE, Norheim RV, Monroe ME, Smith RD, Baker ES.

Analyst. 2015 Oct 21;140(20):6955-63. doi: 10.1039/c5an00897b.

35.

Orthogonal Injection Ion Funnel Interface Providing Enhanced Performance for Selected Reaction Monitoring-Triple Quadrupole Mass Spectrometry.

Chen TC, Fillmore TL, Prost SA, Moore RJ, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jul 21;87(14):7326-31. doi: 10.1021/acs.analchem.5b01482. Epub 2015 Jul 8.

36.

Enhancing bottom-up and top-down proteomic measurements with ion mobility separations.

Baker ES, Burnum-Johnson KE, Ibrahim YM, Orton DJ, Monroe ME, Kelly RT, Moore RJ, Zhang X, Théberge R, Costello CE, Smith RD.

Proteomics. 2015 Aug;15(16):2766-76. doi: 10.1002/pmic.201500048. Epub 2015 Jul 3.

37.

Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations.

Zhang X, Garimella SV, Prost SA, Webb IK, Chen TC, Tang K, Tolmachev AV, Norheim RV, Baker ES, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jun 16;87(12):6010-6. doi: 10.1021/acs.analchem.5b00214. Epub 2015 May 26.

38.

Gut bacteria require neutrophils to promote mammary tumorigenesis.

Lakritz JR, Poutahidis T, Mirabal S, Varian BJ, Levkovich T, Ibrahim YM, Ward JM, Teng EC, Fisher B, Parry N, Lesage S, Alberg N, Gourishetti S, Fox JG, Ge Z, Erdman SE.

Oncotarget. 2015 Apr 20;6(11):9387-96.

39.

Design and performance of a high-flux electrospray ionization source for ion soft landing.

Gunaratne KD, Prabhakaran V, Ibrahim YM, Norheim RV, Johnson GE, Laskin J.

Analyst. 2015 May 7;140(9):2957-63. doi: 10.1039/c5an00220f. Epub 2015 Mar 24.

PMID:
25800562
40.

Dietary microbes modulate transgenerational cancer risk.

Poutahidis T, Varian BJ, Levkovich T, Lakritz JR, Mirabal S, Kwok C, Ibrahim YM, Kearney SM, Chatzigiagkos A, Alm EJ, Erdman SE.

Cancer Res. 2015 Apr 1;75(7):1197-204. doi: 10.1158/0008-5472.CAN-14-2732. Epub 2015 Feb 25.

41.

Improved ion optics for introduction of ions into a 9.4-T Fourier transform ion cyclotron resonance mass spectrometer.

Chen Y, Leach FE 3rd, Kaiser NK, Dang X, Ibrahim YM, Norheim RV, Anderson GA, Smith RD, Marshall AG.

J Mass Spectrom. 2015 Jan;50(1):280-4. doi: 10.1002/jms.3523.

42.

Rectangular ion funnel: a new ion funnel interface for structures for lossless ion manipulations.

Chen TC, Webb IK, Prost SA, Harrer MB, Norheim RV, Tang K, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jan 6;87(1):716-22. doi: 10.1021/ac503564c. Epub 2014 Dec 8.

43.

Simulation of electric potentials and ion motion in planar electrode structures for lossless ion manipulations (SLIM).

Garimella SV, Ibrahim YM, Webb IK, Tolmachev AV, Zhang X, Prost SA, Anderson GA, Smith RD.

J Am Soc Mass Spectrom. 2014 Nov;25(11):1890-6. doi: 10.1007/s13361-014-0976-y. Epub 2014 Sep 26.

44.

Mobility-resolved ion selection in uniform drift field ion mobility spectrometry/mass spectrometry: dynamic switching in structures for lossless ion manipulations.

Webb IK, Garimella SV, Tolmachev AV, Chen TC, Zhang X, Cox JT, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2014 Oct 7;86(19):9632-7. doi: 10.1021/ac502139e. Epub 2014 Sep 26.

45.

Characterization of ion dynamics in structures for lossless ion manipulations.

Tolmachev AV, Webb IK, Ibrahim YM, Garimella SV, Zhang X, Anderson GA, Smith RD.

Anal Chem. 2014 Sep 16;86(18):9162-8. doi: 10.1021/ac502054p. Epub 2014 Sep 4.

46.

Experimental evaluation and optimization of structures for lossless ion manipulations for ion mobility spectrometry with time-of-flight mass spectrometry.

Webb IK, Garimella SV, Tolmachev AV, Chen TC, Zhang X, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2014 Sep 16;86(18):9169-76. doi: 10.1021/ac502055e. Epub 2014 Sep 5.

47.

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry.

Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson WF 3rd, Anderson GA, Smith RD.

Int J Mass Spectrom. 2013 Nov 15;354-355:312-317.

48.

Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements.

Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH.

J Am Soc Mass Spectrom. 2014 Dec;25(12):2020-2027. doi: 10.1007/s13361-014-0895-y. Epub 2014 May 6.

49.

Improving ion mobility measurement sensitivity by utilizing helium in an ion funnel trap.

Ibrahim YM, Garimella SV, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2014 Jun 3;86(11):5295-9. doi: 10.1021/ac404250z. Epub 2014 May 13.

50.

Implementation of dipolar resonant excitation for collision induced dissociation with ion mobility/time-of-flight MS.

Webb IK, Chen TC, Danielson WF 3rd, Ibrahim YM, Tang K, Anderson GA, Smith RD.

J Am Soc Mass Spectrom. 2014 Apr;25(4):563-71. doi: 10.1007/s13361-013-0815-6. Epub 2014 Jan 28. Erratum in: J Am Soc Mass Spectrom. 2014 Nov;25(11):1996.

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