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Items: 1 to 50 of 230

1.

Global identifiability of latent class models with applications to diagnostic test accuracy studies: a Gröbner basis approach.

Duan R, Cao M, Ning Y, Zhu M, Zhang B, McDermott A, Chu H, Zhou X, Moore JH, Ibrahim JG, Scharfstein DO, Chen Y.

Biometrics. 2019 Aug 24. doi: 10.1111/biom.13133. [Epub ahead of print]

PMID:
31444807
2.

Nonparametric expression analysis using inferential replicate counts.

Zhu A, Srivastava A, Ibrahim JG, Patro R, Love MI.

Nucleic Acids Res. 2019 Oct 10;47(18):e105. doi: 10.1093/nar/gkz622.

3.

Controlling false discovery proportion in identification of drug-related adverse events from multiple system organ classes.

Tan X, Liu GF, Zeng D, Wang W, Diao G, Heyse JF, Ibrahim JG.

Stat Med. 2019 Sep 30;38(22):4378-4389. doi: 10.1002/sim.8304. Epub 2019 Jul 17.

PMID:
31313376
4.

Quantifying time-varying cause-specific hazard and subdistribution hazard ratios with competing risks data.

Diao G, Ibrahim JG.

Clin Trials. 2019 Aug;16(4):363-374. doi: 10.1177/1740774519852708. Epub 2019 Jun 5.

PMID:
31165631
5.

Bayesian adaptive basket trial design using model averaging.

Psioda MA, Xu J, Jiang Q, Ke C, Yang Z, Ibrahim JG.

Biostatistics. 2019 May 20. pii: kxz014. doi: 10.1093/biostatistics/kxz014. [Epub ahead of print]

PMID:
31107534
6.

Semiparametric frailty models for zero-inflated event count data in the presence of informative dropout.

Diao G, Zeng D, Hu K, Ibrahim JG.

Biometrics. 2019 May 20. doi: 10.1111/biom.13085. [Epub ahead of print]

PMID:
31106400
7.

Improved detection of epigenomic marks with mixed-effects hidden Markov models.

Baldoni PL, Rashid NU, Ibrahim JG.

Biometrics. 2019 May 13. doi: 10.1111/biom.13083. [Epub ahead of print]

PMID:
31081192
8.

Efficient methods for signal detection from correlated adverse events in clinical trials.

Diao G, Liu GF, Zeng D, Wang W, Tan X, Heyse JF, Ibrahim JG.

Biometrics. 2019 Sep;75(3):1000-1008. doi: 10.1111/biom.13031. Epub 2019 Mar 29.

PMID:
30690717
9.

Bayesian Modeling and Inference for Nonignorably Missing Longitudinal Binary Response Data with Applications to HIV Prevention Trials.

Wu J, Ibrahim JG, Chen MH, Schifano ED, Fisher JD.

Stat Sin. 2018 Oct;28:1929-1963. doi: 10.5705/ss.202016.0319.

10.

The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments.

O'Brien JJ, Gunawardena HP, Paulo JA, Chen X, Ibrahim JG, Gygi SP, Qaqish BF.

Ann Appl Stat. 2018 Dec;12(4):2075-2095. doi: 10.1214/18-AOAS1144. Epub 2018 Nov 13.

11.

TPRM: TENSOR PARTITION REGRESSION MODELS WITH APPLICATIONS IN IMAGING BIOMARKER DETECTION.

Miranda MF, Zhu H, Ibrahim JG; Alzheimer’s Disease Neuroimaging Initiative.

Ann Appl Stat. 2018 Sep;12(3):1422-1450. doi: 10.1214/17-AOAS1116. Epub 2018 Sep 11.

12.

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences.

Zhu A, Ibrahim JG, Love MI.

Bioinformatics. 2019 Jun 1;35(12):2084-2092. doi: 10.1093/bioinformatics/bty895.

13.

Functional Linear Regression Models for Nonignorable Missing Scalar Responses.

Li T, Xie F, Feng X, Ibrahim JG, Zhu H.

Stat Sin. 2018 Oct;28(4):1867-1886. doi: 10.5705/ss.202016.0350.

14.

Bayesian multivariate skew meta-regression models for individual patient data.

Ibrahim JG, Kim S, Chen MH, Shah AK, Lin J.

Stat Methods Med Res. 2019 Oct-Nov;28(10-11):3415-3436. doi: 10.1177/0962280218801147. Epub 2018 Oct 12.

15.

Estimating Treatment Effects for Recurrent Events in the Presence of Rescue Medications: An Application to the Immune Thrombocytopenia Study.

Gao F, Zeng D, Wei H, Wang X, Ibrahim JG.

Stat Biosci. 2018 Aug;10(2):473-489. doi: 10.1007/s12561-016-9164-x. Epub 2016 Aug 29.

16.

A practical Bayesian adaptive design incorporating data from historical controls.

Psioda MA, Soukup M, Ibrahim JG.

Stat Med. 2018 Nov 30;37(27):4054-4070. doi: 10.1002/sim.7897. Epub 2018 Jul 22.

17.

Heritability of Regional Brain Volumes in Large-Scale Neuroimaging and Genetic Studies.

Zhao B, Ibrahim JG, Li Y, Li T, Wang Y, Shan Y, Zhu Z, Zhou F, Zhang J, Huang C, Liao H, Yang L, Thompson PM, Zhu H.

Cereb Cortex. 2019 Jul 5;29(7):2904-2914. doi: 10.1093/cercor/bhy157.

PMID:
30010813
18.

Bayesian design of a survival trial with a cured fraction using historical data.

Psioda MA, Ibrahim JG.

Stat Med. 2018 Nov 20;37(26):3814-3831. doi: 10.1002/sim.7846. Epub 2018 Jun 25.

19.

Bayesian inference for network meta-regression using multivariate random effects with applications to cholesterol lowering drugs.

Li H, Chen MH, Ibrahim JG, Kim S, Shah AK, Lin J, Tershakovec AM.

Biostatistics. 2019 Jul 1;20(3):499-516. doi: 10.1093/biostatistics/kxy014.

PMID:
29912318
20.

MILFM: Multiple index latent factor model based on high-dimensional features.

Yang H, Zhu H, Ibrahim JG.

Biometrics. 2018 Sep;74(3):834-844. doi: 10.1111/biom.12866. Epub 2018 Apr 17.

21.

Bayesian clinical trial design using historical data that inform the treatment effect.

Psioda MA, Ibrahim JG.

Biostatistics. 2019 Jul 1;20(3):400-415. doi: 10.1093/biostatistics/kxy009.

PMID:
29547966
22.

Biomarker threshold adaptive designs for survival endpoints.

Diao G, Dong J, Zeng D, Ke C, Rong A, Ibrahim JG.

J Biopharm Stat. 2018;28(6):1038-1054. doi: 10.1080/10543406.2018.1434191. Epub 2018 Feb 13.

23.

Bayesian Sensitivity Analysis of a Nonlinear Dynamic Factor Analysis Model with Nonparametric Prior and Possible Nonignorable Missingness.

Tang N, Chow SM, Ibrahim JG, Zhu H.

Psychometrika. 2017 Dec;82(4):875-903. doi: 10.1007/s11336-017-9587-4. Epub 2017 Oct 13.

24.

HFPRM: Hierarchical Functional Principal Regression Model for Diffusion Tensor Image Bundle Statistics.

Zhang J, Huang C, Ibrahim JG, Jha S, Knickmeyer RC, Gilmore JH, Styner M, Zhu H.

Inf Process Med Imaging. 2017 Jun;10265:478-489. doi: 10.1007/978-3-319-59050-9_38. Epub 2017 May 23.

25.

Comprehensive assessment of cytochromes P450 and transporter genetics with endoxifen concentration during tamoxifen treatment.

Marcath LA, Deal AM, Van Wieren E, Danko W, Walko CM, Ibrahim JG, Weck KE, Jones DR, Desta Z, McLeod HL, Carey LA, Irvin WJ Jr, Hertz DL.

Pharmacogenet Genomics. 2017 Nov;27(11):402-409. doi: 10.1097/FPC.0000000000000311.

26.

FLCRM: Functional linear cox regression model.

Kong D, Ibrahim JG, Lee E, Zhu H.

Biometrics. 2018 Mar;74(1):109-117. doi: 10.1111/biom.12748. Epub 2017 Sep 1.

27.

Control-based imputation for sensitivity analyses in informative censoring for recurrent event data.

Gao F, Liu GF, Zeng D, Xu L, Lin B, Diao G, Golm G, Heyse JF, Ibrahim JG.

Pharm Stat. 2017 Nov;16(6):424-432. doi: 10.1002/pst.1821. Epub 2017 Aug 22.

PMID:
28834175
28.

Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells.

Bower JJ, Vance LD, Psioda M, Smith-Roe SL, Simpson DA, Ibrahim JG, Hoadley KA, Perou CM, Kaufmann WK.

NPJ Breast Cancer. 2017 Mar 31;3:9. doi: 10.1038/s41523-017-0009-7. eCollection 2017.

29.

A Bayesian hierarchical model for network meta-analysis of multiple diagnostic tests.

Ma X, Lian Q, Chu H, Ibrahim JG, Chen Y.

Biostatistics. 2018 Jan 1;19(1):87-102. doi: 10.1093/biostatistics/kxx025.

30.

Modeling event count data in the presence of informative dropout with application to bleeding and transfusion events in myelodysplastic syndrome.

Diao G, Zeng D, Hu K, Ibrahim JG.

Stat Med. 2017 Sep 30;36(22):3475-3494. doi: 10.1002/sim.7351. Epub 2017 May 30.

PMID:
28560768
31.

Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.

Lee E, Giovanello KS, Saykin AJ, Xie F, Kong D, Wang Y, Yang L, Ibrahim JG, Doraiswamy PM, Zhu H.

Alzheimers Dement (Amst). 2017 Apr 23;8:86-95. doi: 10.1016/j.dadm.2017.04.004. eCollection 2017.

32.

Regression Models on Riemannian Symmetric Spaces.

Cornea E, Zhu H, Kim P, Ibrahim JG.

J R Stat Soc Series B Stat Methodol. 2017 Mar;79(2):463-482. doi: 10.1111/rssb.12169. Epub 2016 Mar 20.

33.

Pattern mixture models for clinical validation of biomarkers in the presence of missing data.

Gao F, Dong J, Zeng D, Rong A, Ibrahim JG.

Stat Med. 2017 Aug 30;36(19):2994-3004. doi: 10.1002/sim.7328. Epub 2017 May 2.

34.

Statistical design of noninferiority multiple region clinical trials to assess global and consistent treatment effects.

Diao G, Zeng D, Ibrahim JG, Rong A, Lee O, Zhang K, Chen Q.

J Biopharm Stat. 2017;27(6):933-944. doi: 10.1080/10543406.2017.1293075. Epub 2017 Mar 15.

35.

On inference of control-based imputation for analysis of repeated binary outcomes with missing data.

Gao F, Liu G, Zeng D, Diao G, Heyse JF, Ibrahim JG.

J Biopharm Stat. 2017;27(3):358-372. doi: 10.1080/10543406.2017.1289957. Epub 2017 Feb 7.

PMID:
28287873
36.

Bayesian Model Assessment in Joint Modeling of Longitudinal and Survival Data with Applications to Cancer Clinical Trials.

Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W.

J Comput Graph Stat. 2017;26(1):121-133. doi: 10.1080/10618600.2015.1117472. Epub 2017 Feb 16.

37.

Bayesian clinical trial design using Markov models with applications to autoimmune disease.

Eggleston BS, Ibrahim JG, Catellier D.

Contemp Clin Trials. 2017 Dec;63:73-83. doi: 10.1016/j.cct.2017.02.004. Epub 2017 Feb 8.

38.

Bayesian longitudinal low-rank regression models for imaging genetic data from longitudinal studies.

Lu ZH, Khondker Z, Ibrahim JG, Wang Y, Zhu H; Alzheimer’s Disease Neuroimaging Initiative.

Neuroimage. 2017 Apr 1;149:305-322. doi: 10.1016/j.neuroimage.2017.01.052. Epub 2017 Jan 29.

39.

SR-HARDI: Spatially Regularizing High Angular Resolution Diffusion Imaging.

Rao S, Ibrahim JG, Cheng J, Yap PT, Zhu H.

J Comput Graph Stat. 2016;25(4):1195-1211. Epub 2015 Nov 11.

40.

JMFit: A SAS Macro for Joint Models of Longitudinal and Survival Data.

Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W.

J Stat Softw. 2016 Jul;71(3). doi: 10.18637/jss.v071.i03. Epub 2016 Jul 11.

41.

An Automated High-throughput Array Microscope for Cancer Cell Mechanics.

Cribb JA, Osborne LD, Beicker K, Psioda M, Chen J, O'Brien ET, Taylor Ii RM, Vicci L, Hsiao JP, Shao C, Falvo M, Ibrahim JG, Wood KC, Blobe GC, Superfine R.

Sci Rep. 2016 Jun 6;6:27371. doi: 10.1038/srep27371.

42.

Tamoxifen Dose Escalation in Patients With Diminished CYP2D6 Activity Normalizes Endoxifen Concentrations Without Increasing Toxicity.

Hertz DL, Deal A, Ibrahim JG, Walko CM, Weck KE, Anderson S, Magrinat G, Olajide O, Moore S, Raab R, Carrizosa DR, Corso S, Schwartz G, Graham M, Peppercorn JM, Jones DR, Desta Z, Flockhart DA, Evans JP, McLeod HL, Carey LA, Irvin WJ Jr.

Oncologist. 2016 Jul;21(7):795-803. doi: 10.1634/theoncologist.2015-0480. Epub 2016 May 25.

43.

Reply to Comments.

Zeng D, Gao F, Ibrahim JG, Hu K, Jia C.

Stat Med. 2016 Apr 30;35(9):1560. doi: 10.1002/sim.6824. No abstract available.

PMID:
27042812
44.

Diagnostic Measures for the Cox Regression Model with Missing Covariates.

Zhu H, Ibrahim JG, Chen MH.

Biometrika. 2015 Dec;102(4):907-923. Epub 2015 Nov 4.

45.

BFLCRM: A BAYESIAN FUNCTIONAL LINEAR COX REGRESSION MODEL FOR PREDICTING TIME TO CONVERSION TO ALZHEIMER'S DISEASE.

Lee E, Zhu H, Kong D, Wang Y, Giovanello KS, Ibrahim JG.

Ann Appl Stat. 2015 Dec;9(4):2153-2178.

46.

A STATISTICAL MODEL TO ASSESS (ALLELE-SPECIFIC) ASSOCIATIONS BETWEEN GENE EXPRESSION AND EPIGENETIC FEATURES USING SEQUENCING DATA.

Rashid NU, Sun W, Ibrahim JG.

Ann Appl Stat. 2016;10(4):2254-2273. doi: 10.1214/16-AOAS973. Epub 2017 Jan 5.

47.

Homology cluster differential expression analysis for interspecies mRNA-Seq experiments.

Gelfond JA, Ibrahim JG, Chen MH, Sun W, Lewis K, Kinahan S, Hibbs M, Buffenstein R.

Stat Appl Genet Mol Biol. 2015 Dec;14(6):507-16. doi: 10.1515/sagmb-2014-0056.

PMID:
26595407
48.

SPReM: Sparse Projection Regression Model For High-dimensional Linear Regression.

Sun Q, Zhu H, Liu Y, Ibrahim JG; Alzheimer’;s Disease Neuroimaging Initiative.

J Am Stat Assoc. 2015;110(509):289-302. Epub 2015 Apr 22.

49.

Effective intra-S checkpoint responses to UVC in primary human melanocytes and melanoma cell lines.

Cordeiro-Stone M, McNulty JJ, Sproul CD, Chastain PD, Gibbs-Flournoy E, Zhou Y, Carson C, Rao S, Mitchell DL, Simpson DA, Thomas NE, Ibrahim JG, Kaufmann WK.

Pigment Cell Melanoma Res. 2016 Jan;29(1):68-80. doi: 10.1111/pcmr.12426. Epub 2015 Nov 3.

50.

The power prior: theory and applications.

Ibrahim JG, Chen MH, Gwon Y, Chen F.

Stat Med. 2015 Dec 10;34(28):3724-49. doi: 10.1002/sim.6728. Epub 2015 Sep 7.

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