Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 43

1.

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation.

Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, Alvarez-Ponce D, Mitter N, Hayward A, Fletcher S, Rozas J, Sánchez Gracia A, Kuhn D, Barrientos-Priego AF, Salojärvi J, Librado P, Sankoff D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17081-17089. doi: 10.1073/pnas.1822129116. Epub 2019 Aug 6.

2.

The Genome of Cucurbita argyrosperma (Silver-Seed Gourd) Reveals Faster Rates of Protein-Coding Gene and Long Noncoding RNA Turnover and Neofunctionalization within Cucurbita.

Barrera-Redondo J, Ibarra-Laclette E, Vázquez-Lobo A, Gutiérrez-Guerrero YT, Sánchez de la Vega G, Piñero D, Montes-Hernández S, Lira-Saade R, Eguiarte LE.

Mol Plant. 2019 Apr 1;12(4):506-520. doi: 10.1016/j.molp.2018.12.023. Epub 2019 Jan 8.

PMID:
30630074
3.

Genomic Signals of Adaptation towards Mutualism and Sociality in Two Ambrosia Beetle Complexes.

Blaz J, Barrera-Redondo J, Vázquez-Rosas-Landa M, Canedo-Téxon A, Aguirre von Wobeser E, Carrillo D, Stouthamer R, Eskalen A, Villafán E, Alonso-Sánchez A, Lamelas A, Ibarra-Juarez LA, Pérez-Torres CA, Ibarra-Laclette E.

Life (Basel). 2018 Dec 22;9(1). pii: E2. doi: 10.3390/life9010002.

4.

Impact of Rearing Conditions on the Ambrosia Beetle's Microbiome.

Ibarra-Juarez LA, Desgarennes D, Vázquez-Rosas-Landa M, Villafan E, Alonso-Sánchez A, Ferrera-Rodríguez O, Moya A, Carrillo D, Cruz L, Carrión G, López-Buenfil A, García-Avila C, Ibarra-Laclette E, Lamelas A.

Life (Basel). 2018 Dec 13;8(4). pii: E63. doi: 10.3390/life8040063.

5.

Developmental and Transcriptomal Responses to Seasonal Dietary Shifts in the Cactophilic Drosophila mojavensis of North America.

Mateus RP, Nazario-Yepiz NO, Ibarra-Laclette E, Ramirez Loustalot-Laclette M, Markow TA.

J Hered. 2019 Jan 7;110(1):58-67. doi: 10.1093/jhered/esy056.

PMID:
30371801
6.

Environmental pH modulates transcriptomic responses in the fungus Fusarium sp. associated with KSHB Euwallacea sp. near fornicatus.

Sánchez-Rangel D, Hernández-Domínguez EE, Pérez-Torres CA, Ortiz-Castro R, Villafán E, Rodríguez-Haas B, Alonso-Sánchez A, López-Buenfil A, Carrillo-Ortiz N, Hernández-Ramos L, Ibarra-Laclette E.

BMC Genomics. 2018 Oct 1;19(1):721. doi: 10.1186/s12864-018-5083-1.

7.

Genomic Analysis of Bacillus sp. Strain B25, a Biocontrol Agent of Maize Pathogen Fusarium verticillioides.

Douriet-Gámez NR, Maldonado-Mendoza IE, Ibarra-Laclette E, Blom J, Calderón-Vázquez CL.

Curr Microbiol. 2018 Mar;75(3):247-255. doi: 10.1007/s00284-017-1372-1. Epub 2017 Oct 19.

PMID:
29051980
8.

Draft Genome Sequence of the Phytopathogenic Fungus Fusarium euwallaceae, the Causal Agent of Fusarium Dieback.

Ibarra-Laclette E, Sánchez-Rangel D, Hernández-Domínguez E, Pérez-Torres CA, Ortiz-Castro R, Villafán E, Alonso-Sánchez A, Rodríguez-Haas B, López-Buenfil A, García-Avila C, Ramírez-Pool JA.

Genome Announc. 2017 Aug 31;5(35). pii: e00881-17. doi: 10.1128/genomeA.00881-17.

9.

Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome.

Lan T, Renner T, Ibarra-Laclette E, Farr KM, Chang TH, Cervantes-Pérez SA, Zheng C, Sankoff D, Tang H, Purbojati RW, Putra A, Drautz-Moses DI, Schuster SC, Herrera-Estrella L, Albert VA.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):E4435-E4441. doi: 10.1073/pnas.1702072114. Epub 2017 May 15. Erratum in: Proc Natl Acad Sci U S A. 2017 Jun 19;:.

10.

Identification of candidate genes related to calanolide biosynthesis by transcriptome sequencing of Calophyllum brasiliense (Calophyllaceae).

Gómez-Robledo HB, Cruz-Sosa F, Bernabé-Antonio A, Guerrero-Analco A, Olivares-Romero JL, Alonso-Sánchez A, Villafán E, Ibarra-Laclette E.

BMC Plant Biol. 2016 Aug 15;16(1):177. doi: 10.1186/s12870-016-0862-9.

11.

The Trichoderma atroviride cryptochrome/photolyase genes regulate the expression of blr1-independent genes both in red and blue light.

García-Esquivel M, Esquivel-Naranjo EU, Hernández-Oñate MA, Ibarra-Laclette E, Herrera-Estrella A.

Fungal Biol. 2016 Apr;120(4):500-512. doi: 10.1016/j.funbio.2016.01.007. Epub 2016 Jan 18.

PMID:
27020152
12.

The Metagenome of Utricularia gibba's Traps: Into the Microbial Input to a Carnivorous Plant.

Alcaraz LD, Martínez-Sánchez S, Torres I, Ibarra-Laclette E, Herrera-Estrella L.

PLoS One. 2016 Feb 9;11(2):e0148979. doi: 10.1371/journal.pone.0148979. eCollection 2016.

13.

De novo sequencing and analysis of Lophophora williamsii transcriptome, and searching for putative genes involved in mescaline biosynthesis.

Ibarra-Laclette E, Zamudio-Hernández F, Pérez-Torres CA, Albert VA, Ramírez-Chávez E, Molina-Torres J, Fernández-Cortes A, Calderón-Vázquez C, Olivares-Romero JL, Herrera-Estrella A, Herrera-Estrella L.

BMC Genomics. 2015 Sep 2;16:657. doi: 10.1186/s12864-015-1821-9.

14.

Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.

Kilaru A, Cao X, Dabbs PB, Sung HJ, Rahman MM, Thrower N, Zynda G, Podicheti R, Ibarra-Laclette E, Herrera-Estrella L, Mockaitis K, Ohlrogge JB.

BMC Plant Biol. 2015 Aug 16;15:203. doi: 10.1186/s12870-015-0586-2.

15.

Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids.

Ibarra-Laclette E, Méndez-Bravo A, Pérez-Torres CA, Albert VA, Mockaitis K, Kilaru A, López-Gómez R, Cervantes-Luevano JI, Herrera-Estrella L.

BMC Genomics. 2015 Aug 13;16:599. doi: 10.1186/s12864-015-1775-y.

16.

Phylogenetic and expression analysis of the NPR1-like gene family from Persea americana (Mill.).

Backer R, Mahomed W, Reeksting BJ, Engelbrecht J, Ibarra-Laclette E, van den Berg N.

Front Plant Sci. 2015 Apr 29;6:300. doi: 10.3389/fpls.2015.00300. eCollection 2015.

17.

High Gene Family Turnover Rates and Gene Space Adaptation in the Compact Genome of the Carnivorous Plant Utricularia gibba.

Carretero-Paulet L, Librado P, Chang TH, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA.

Mol Biol Evol. 2015 May;32(5):1284-95. doi: 10.1093/molbev/msv020. Epub 2015 Jan 31.

PMID:
25637935
18.

Genome-wide analysis of adaptive molecular evolution in the carnivorous plant Utricularia gibba.

Carretero-Paulet L, Chang TH, Librado P, Ibarra-Laclette E, Herrera-Estrella L, Rozas J, Albert VA.

Genome Biol Evol. 2015 Jan 9;7(2):444-56. doi: 10.1093/gbe/evu288.

19.

Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.

Martínez-Trujillo M, Méndez-Bravo A, Ortiz-Castro R, Hernández-Madrigal F, Ibarra-Laclette E, Ruiz-Herrera LF, Long TA, Cervantes C, Herrera-Estrella L, López-Bucio J.

Plant Mol Biol. 2014 Sep;86(1-2):35-50. doi: 10.1007/s11103-014-0210-0. Epub 2014 Jun 14.

PMID:
24928490
20.

An improved, low-cost, hydroponic system for growing Arabidopsis and other plant species under aseptic conditions.

Alatorre-Cobos F, Calderón-Vázquez C, Ibarra-Laclette E, Yong-Villalobos L, Pérez-Torres CA, Oropeza-Aburto A, Méndez-Bravo A, González-Morales SI, Gutiérrez-Alanís D, Chacón-López A, Peña-Ocaña BA, Herrera-Estrella L.

BMC Plant Biol. 2014 Mar 21;14:69. doi: 10.1186/1471-2229-14-69.

21.

Analysis of expressed sequence tags (ESTs) from avocado seed (Persea americana var. drymifolia) reveals abundant expression of the gene encoding the antimicrobial peptide snakin.

Guzmán-Rodríguez JJ, Ibarra-Laclette E, Herrera-Estrella L, Ochoa-Zarzosa A, Suárez-Rodríguez LM, Rodríguez-Zapata LC, Salgado-Garciglia R, Jimenez-Moraila B, López-Meza JE, López-Gómez R.

Plant Physiol Biochem. 2013 Sep;70:318-24. doi: 10.1016/j.plaphy.2013.05.045. Epub 2013 Jun 13.

PMID:
23811120
22.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

23.

Transcriptome analysis of symptomatic and recovered leaves of geminivirus-infected pepper (Capsicum annuum).

Góngora-Castillo E, Ibarra-Laclette E, Trejo-Saavedra DL, Rivera-Bustamante RF.

Virol J. 2012 Nov 27;9:295. doi: 10.1186/1743-422X-9-295.

24.

Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members.

Leyva-González MA, Ibarra-Laclette E, Cruz-Ramírez A, Herrera-Estrella L.

PLoS One. 2012;7(10):e48138. doi: 10.1371/journal.pone.0048138. Epub 2012 Oct 31.

25.

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, Zhao F, Kim HL, Burhans RC, Drautz DI, Wittekindt NE, Tomsho LP, Ibarra-Laclette E, Herrera-Estrella L, Peacock E, Farley S, Sage GK, Rode K, Obbard M, Montiel R, Bachmann L, Ingólfsson O, Aars J, Mailund T, Wiig O, Talbot SL, Lindqvist C.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):E2382-90. doi: 10.1073/pnas.1210506109. Epub 2012 Jul 23.

26.

Translational regulation of Arabidopsis XIPOTL1 is modulated by phosphocholine levels via the phylogenetically conserved upstream open reading frame 30.

Alatorre-Cobos F, Cruz-Ramírez A, Hayden CA, Pérez-Torres CA, Chauvin AL, Ibarra-Laclette E, Alva-Cortés E, Jorgensen RA, Herrera-Estrella L.

J Exp Bot. 2012 Sep;63(14):5203-21. doi: 10.1093/jxb/ers180. Epub 2012 Jul 12.

PMID:
22791820
27.

How plants sense wounds: damaged-self recognition is based on plant-derived elicitors and induces octadecanoid signaling.

Heil M, Ibarra-Laclette E, Adame-Álvarez RM, Martínez O, Ramirez-Chávez E, Molina-Torres J, Herrera-Estrella L.

PLoS One. 2012;7(2):e30537. doi: 10.1371/journal.pone.0030537. Epub 2012 Feb 9.

28.

Alkamides activate jasmonic acid biosynthesis and signaling pathways and confer resistance to Botrytis cinerea in Arabidopsis thaliana.

Méndez-Bravo A, Calderón-Vázquez C, Ibarra-Laclette E, Raya-González J, Ramírez-Chávez E, Molina-Torres J, Guevara-García AA, López-Bucio J, Herrera-Estrella L.

PLoS One. 2011;6(11):e27251. doi: 10.1371/journal.pone.0027251. Epub 2011 Nov 4.

29.

Is GC bias in the nuclear genome of the carnivorous plant Utricularia driven by ROS-based mutation and biased gene conversion?

Ibarra-Laclette E, Albert VA, Herrera-Estrella A, Herrera-Estrella L.

Plant Signal Behav. 2011 Nov;6(11):1631-4. doi: 10.4161/psb.6.11.17657. Epub 2011 Nov 1.

30.

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome.

Ibarra-Laclette E, Albert VA, Pérez-Torres CA, Zamudio-Hernández F, Ortega-Estrada Mde J, Herrera-Estrella A, Herrera-Estrella L.

BMC Plant Biol. 2011 Jun 3;11:101. doi: 10.1186/1471-2229-11-101.

31.

Identification of mycoparasitism-related genes in Trichoderma atroviride.

Reithner B, Ibarra-Laclette E, Mach RL, Herrera-Estrella A.

Appl Environ Microbiol. 2011 Jul;77(13):4361-70. doi: 10.1128/AEM.00129-11. Epub 2011 Apr 29.

32.

Gene expression of Pht cluster genes and a putative non-ribosomal peptide synthetase required for phaseolotoxin production is regulated by GacS/GacA in Pseudomonas syringae pv. phaseolicola.

De la Torre-Zavala S, Aguilera S, Ibarra-Laclette E, Hernandez-Flores JL, Hernández-Morales A, Murillo J, Alvarez-Morales A.

Res Microbiol. 2011 Jun;162(5):488-98. doi: 10.1016/j.resmic.2011.04.010. Epub 2011 Apr 21.

PMID:
21527339
33.

Global expression pattern comparison between low phosphorus insensitive 4 and WT Arabidopsis reveals an important role of reactive oxygen species and jasmonic acid in the root tip response to phosphate starvation.

Chacón-López A, Ibarra-Laclette E, Sánchez-Calderón L, Gutiérrez-Alanis D, Herrera-Estrella L.

Plant Signal Behav. 2011 Mar;6(3):382-92. Epub 2011 Mar 1.

34.

Inoculation of tomato plants (Solanum lycopersicum) with growth-promoting Bacillus subtilis retards whitefly Bemisia tabaci development.

Valenzuela-Soto JH, Estrada-Hernández MG, Ibarra-Laclette E, Délano-Frier JP.

Planta. 2010 Jan;231(2):397-410. doi: 10.1007/s00425-009-1061-9. Epub 2009 Nov 22.

PMID:
20041333
35.

Transcriptional profile of Pseudomonas syringae pv. phaseolicola NPS3121 in response to tissue extracts from a susceptible Phaseolus vulgaris L. cultivar.

Hernández-Morales A, De la Torre-Zavala S, Ibarra-Laclette E, Hernández-Flores JL, Jofre-Garfias AE, Martínez-Antonio A, Alvarez-Morales A.

BMC Microbiol. 2009 Dec 14;9:257. doi: 10.1186/1471-2180-9-257.

36.

The Palomero genome suggests metal effects on domestication.

Vielle-Calzada JP, Martínez de la Vega O, Hernández-Guzmán G, Ibarra-Laclette E, Alvarez-Mejía C, Vega-Arreguín JC, Jiménez-Moraila B, Fernández-Cortés A, Corona-Armenta G, Herrera-Estrella L, Herrera-Estrella A.

Science. 2009 Nov 20;326(5956):1078. doi: 10.1126/science.1178437.

37.

Analysis of gene expression and physiological responses in three Mexican maize landraces under drought stress and recovery irrigation.

Hayano-Kanashiro C, Calderón-Vázquez C, Ibarra-Laclette E, Herrera-Estrella L, Simpson J.

PLoS One. 2009 Oct 30;4(10):e7531. doi: 10.1371/journal.pone.0007531.

38.

Differential gene expression in whitefly Bemisia tabaci-infested tomato (Solanum lycopersicum) plants at progressing developmental stages of the insect's life cycle.

Estrada-Hernández MG, Valenzuela-Soto JH, Ibarra-Laclette E, Délano-Frier JP.

Physiol Plant. 2009 Sep;137(1):44-60. doi: 10.1111/j.1399-3054.2009.01260.x. Epub 2009 Jun 9.

PMID:
19627556
39.

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.

Vega-Arreguín JC, Ibarra-Laclette E, Jiménez-Moraila B, Martínez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A.

BMC Genomics. 2009 Jul 6;10:299. doi: 10.1186/1471-2164-10-299.

40.

Phosphate availability alters lateral root development in Arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor.

Pérez-Torres CA, López-Bucio J, Cruz-Ramírez A, Ibarra-Laclette E, Dharmasiri S, Estelle M, Herrera-Estrella L.

Plant Cell. 2008 Dec;20(12):3258-72. doi: 10.1105/tpc.108.058719. Epub 2008 Dec 23.

41.

Transcript profiling of Zea mays roots reveals gene responses to phosphate deficiency at the plant- and species-specific levels.

Calderon-Vazquez C, Ibarra-Laclette E, Caballero-Perez J, Herrera-Estrella L.

J Exp Bot. 2008;59(9):2479-97. doi: 10.1093/jxb/ern115. Epub 2008 May 23.

PMID:
18503042
42.

Novel light-regulated genes in Trichoderma atroviride: a dissection by cDNA microarrays.

Rosales-Saavedra T, Esquivel-Naranjo EU, Casas-Flores S, Martínez-Hernández P, Ibarra-Laclette E, Cortes-Penagos C, Herrera-Estrella A.

Microbiology. 2006 Nov;152(Pt 11):3305-17.

PMID:
17074901
43.

Identification of genes differentially expressed during ripening of banana.

Manrique-Trujillo SM, Ramírez-López AC, Ibarra-Laclette E, Gómez-Lim MA.

J Plant Physiol. 2007 Aug;164(8):1037-50. Epub 2006 Aug 28.

PMID:
16934912

Supplemental Content

Loading ...
Support Center