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Items: 35

1.

Genome-wide Association Mapping of Qualitatively Inherited Traits in a Germplasm Collection.

Bandillo NB, Lorenz AJ, Graef GL, Jarquin D, Hyten DL, Nelson RL, Specht JE.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2016.06.0054.

2.

Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

Vuong TD, Walker DR, Nguyen BT, Nguyen TT, Dinh HX, Hyten DL, Cregan PB, Sleper DA, Lee JD, Shannon JG, Nguyen HT.

PLoS One. 2016 Dec 9;11(12):e0164493. doi: 10.1371/journal.pone.0164493. eCollection 2016.

3.

Multi-Population Selective Genotyping to Identify Soybean [Glycine max (L.) Merr.] Seed Protein and Oil QTLs.

Phansak P, Soonsuwon W, Hyten DL, Song Q, Cregan PB, Graef GL, Specht JE.

G3 (Bethesda). 2016 Jun 1;6(6):1635-48. doi: 10.1534/g3.116.027656.

4.

Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.

Song Q, Jenkins J, Jia G, Hyten DL, Pantalone V, Jackson SA, Schmutz J, Cregan PB.

BMC Genomics. 2016 Jan 6;17:33. doi: 10.1186/s12864-015-2344-0.

5.

SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.

Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB.

G3 (Bethesda). 2015 Aug 28;5(11):2285-90. doi: 10.1534/g3.115.020594.

6.

Fingerprinting Soybean Germplasm and Its Utility in Genomic Research.

Song Q, Hyten DL, Jia G, Quigley CV, Fickus EW, Nelson RL, Cregan PB.

G3 (Bethesda). 2015 Jul 28;5(10):1999-2006. doi: 10.1534/g3.115.019000. Erratum in: G3 (Bethesda). 2016 Feb;6(2):495.

7.

QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population.

Warrington CV, Abdel-Haleem H, Hyten DL, Cregan PB, Orf JH, Killam AS, Bajjalieh N, Li Z, Boerma HR.

Theor Appl Genet. 2015 May;128(5):839-50. doi: 10.1007/s00122-015-2474-4. Epub 2015 Feb 12.

PMID:
25673144
8.

A reference genome for common bean and genome-wide analysis of dual domestications.

Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, Barry K, Blair M, Brick MA, Chovatia M, Gepts P, Goodstein DM, Gonzales M, Hellsten U, Hyten DL, Jia G, Kelly JD, Kudrna D, Lee R, Richard MM, Miklas PN, Osorno JM, Rodrigues J, Thareau V, Urrea CA, Wang M, Yu Y, Zhang M, Wing RA, Cregan PB, Rokhsar DS, Jackson SA.

Nat Genet. 2014 Jul;46(7):707-13. doi: 10.1038/ng.3008. Epub 2014 Jun 8.

9.

Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean.

Wang X, Jiang GL, Green M, Scott RA, Song Q, Hyten DL, Cregan PB.

Mol Genet Genomics. 2014 Oct;289(5):935-49. doi: 10.1007/s00438-014-0865-x. Epub 2014 May 27.

PMID:
24861102
10.

A genome-wide association study of seed protein and oil content in soybean.

Hwang EY, Song Q, Jia G, Specht JE, Hyten DL, Costa J, Cregan PB.

BMC Genomics. 2014 Jan 2;15:1. doi: 10.1186/1471-2164-15-1.

11.

Development and evaluation of SoySNP50K, a high-density genotyping array for soybean.

Song Q, Hyten DL, Jia G, Quigley CV, Fickus EW, Nelson RL, Cregan PB.

PLoS One. 2013;8(1):e54985. doi: 10.1371/journal.pone.0054985. Epub 2013 Jan 25.

12.

Identification of positive yield QTL alleles from exotic soybean germplasm in two backcross populations.

Kim KS, Diers BW, Hyten DL, Rouf Mian MA, Shannon JG, Nelson RL.

Theor Appl Genet. 2012 Oct;125(6):1353-69. doi: 10.1007/s00122-012-1944-1. Epub 2012 Aug 7.

PMID:
22869284
13.

Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm.

Kim KS, Unfried JR, Hyten DL, Frederick RD, Hartman GL, Nelson RL, Song Q, Diers BW.

Theor Appl Genet. 2012 Oct;125(6):1339-52. doi: 10.1007/s00122-012-1932-5. Epub 2012 Jul 27.

PMID:
22837016
14.

Structural variants in the soybean genome localize to clusters of biotic stress-response genes.

McHale LK, Haun WJ, Xu WW, Bhaskar PB, Anderson JE, Hyten DL, Gerhardt DJ, Jeddeloh JA, Stupar RM.

Plant Physiol. 2012 Aug;159(4):1295-308. doi: 10.1104/pp.112.194605. Epub 2012 Jun 13.

15.

Mutational analysis of the major soybean UreF paralogue involved in urease activation.

Polacco JC, Hyten DL, Medeiros-Silva M, Sleper DA, Bilyeu KD.

J Exp Bot. 2011 Jun;62(10):3599-608. doi: 10.1093/jxb/err054. Epub 2011 Mar 23.

16.

Identification of a second Asian soybean rust resistance gene in Hyuuga soybean.

Kendrick MD, Harris DK, Ha BK, Hyten DL, Cregan PB, Frederick RD, Boerma HR, Pedley KF.

Phytopathology. 2011 May;101(5):535-43. doi: 10.1094/PHYTO-09-10-0257.

17.

The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82.

Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM.

Plant Physiol. 2011 Feb;155(2):645-55. doi: 10.1104/pp.110.166736. Epub 2010 Nov 29.

18.

Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.

Lin JY, Stupar RM, Hans C, Hyten DL, Jackson SA.

Plant Cell. 2010 Aug;22(8):2545-61. doi: 10.1105/tpc.110.074229. Epub 2010 Aug 20.

19.

High-throughput SNP discovery and assay development in common bean.

Hyten DL, Song Q, Fickus EW, Quigley CV, Lim JS, Choi IY, Hwang EY, Pastor-Corrales M, Cregan PB.

BMC Genomics. 2010 Aug 16;11:475. doi: 10.1186/1471-2164-11-475.

20.

An integrative approach to genomic introgression mapping.

Severin AJ, Peiffer GA, Xu WW, Hyten DL, Bucciarelli B, O'Rourke JA, Bolon YT, Grant D, Farmer AD, May GD, Vance CP, Shoemaker RC, Stupar RM.

Plant Physiol. 2010 Sep;154(1):3-12. doi: 10.1104/pp.110.158949. Epub 2010 Jul 23.

21.

Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538.

Kim KS, Hill CB, Hartman GL, Hyten DL, Hudson ME, Diers BW.

Theor Appl Genet. 2010 Aug;121(3):599-610. doi: 10.1007/s00122-010-1333-6. Epub 2010 May 8.

PMID:
20454773
22.

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence.

Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB.

BMC Genomics. 2010 Jan 15;11:38. doi: 10.1186/1471-2164-11-38.

23.

Genome sequence of the palaeopolyploid soybean.

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA.

Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Erratum in: Nature. 2010 May 6;465(7294):120.

PMID:
20075913
24.

Fine mapping the soybean aphid resistance gene Rag1 in soybean.

Kim KS, Bellendir S, Hudson KA, Hill CB, Hartman GL, Hyten DL, Hudson ME, Diers BW.

Theor Appl Genet. 2010 Mar;120(5):1063-71. doi: 10.1007/s00122-009-1234-8. Epub 2009 Dec 25.

PMID:
20035316
25.

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean.

Hyten DL, Song Q, Choi IY, Yoon MS, Specht JE, Matukumalli LK, Nelson RL, Shoemaker RC, Young ND, Cregan PB.

Theor Appl Genet. 2008 May;116(7):945-52. doi: 10.1007/s00122-008-0726-2. Epub 2008 Feb 16.

PMID:
18278477
26.

A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis.

Choi IY, Hyten DL, Matukumalli LK, Song Q, Chaky JM, Quigley CV, Chase K, Lark KG, Reiter RS, Yoon MS, Hwang EY, Yi SI, Young ND, Shoemaker RC, van Tassell CP, Specht JE, Cregan PB.

Genetics. 2007 May;176(1):685-96. Epub 2007 Mar 4.

27.

Highly variable patterns of linkage disequilibrium in multiple soybean populations.

Hyten DL, Choi IY, Song Q, Shoemaker RC, Nelson RL, Costa JM, Specht JE, Cregan PB.

Genetics. 2007 Apr;175(4):1937-44. Epub 2007 Feb 7.

28.

BARCSoySNP23: a panel of 23 selected SNPs for soybean cultivar identification.

Yoon MS, Song QJ, Choi IY, Specht JE, Hyten DL, Cregan PB.

Theor Appl Genet. 2007 Mar;114(5):885-99. Epub 2007 Jan 12.

PMID:
17219205
29.

Impacts of genetic bottlenecks on soybean genome diversity.

Hyten DL, Song Q, Zhu Y, Choi IY, Nelson RL, Costa JM, Specht JE, Shoemaker RC, Cregan PB.

Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16666-71. Epub 2006 Oct 26.

30.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

31.

Application of machine learning in SNP discovery.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Jan 6;7:4.

32.

Seed quality QTL in a prominent soybean population.

Hyten DL, Pantalone VR, Sams CE, Saxton AM, Landau-Ellis D, Stefaniak TR, Schmidt ME.

Theor Appl Genet. 2004 Aug;109(3):552-61. Epub 2004 Jun 24.

PMID:
15221142
33.

Single-nucleotide polymorphisms in soybean.

Zhu YL, Song QJ, Hyten DL, Van Tassell CP, Matukumalli LK, Grimm DR, Hyatt SM, Fickus EW, Young ND, Cregan PB.

Genetics. 2003 Mar;163(3):1123-34.

34.

Mapping the Fas locus controlling stearic acid content in soybean.

Spencer MM, Pantalone VR, Meyer EJ, Landau-Ellis D, Hyten DL Jr.

Theor Appl Genet. 2003 Feb;106(4):615-9. Epub 2002 Oct 22.

PMID:
12595989
35.

Genomic Regions That Underlie Soybean Seed Isoflavone Content.

Meksem K, Njiti VN, Banz WJ, Iqbal MJ, Kassem MM, Hyten DL, Yuang J, Winters TA, Lightfoot DA.

J Biomed Biotechnol. 2001;1(1):38-44.

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