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Items: 36


Frequency of Tongue Cleaning Impacts the Human Tongue Microbiome Composition and Enterosalivary Circulation of Nitrate.

Tribble GD, Angelov N, Weltman R, Wang BY, Eswaran SV, Gay IC, Parthasarathy K, Dao DV, Richardson KN, Ismail NM, Sharina IG, Hyde ER, Ajami NJ, Petrosino JF, Bryan NS.

Front Cell Infect Microbiol. 2019 Mar 1;9:39. doi: 10.3389/fcimb.2019.00039. eCollection 2019.


Interactive virtual 3D models of renal cancer patient anatomies alter partial nephrectomy surgical planning decisions and increase surgeon confidence compared to volume-rendered images.

Hyde ER, Berger LU, Ramachandran N, Hughes-Hallett A, Pavithran NP, Tran MGB, Ourselin S, Bex A, Mumtaz FH.

Int J Comput Assist Radiol Surg. 2019 Apr;14(4):723-732. doi: 10.1007/s11548-019-01913-5. Epub 2019 Jan 24.


Robotic-assisted Laparoscopic Partial Nephrectomy in a Horseshoe Kidney. A Case Report and Review of the Literature.

Raman A, Kuusk T, Hyde ER, Berger LU, Bex A, Mumtaz F.

Urology. 2018 Apr;114:e3-e5. doi: 10.1016/j.urology.2017.12.003. Epub 2017 Dec 27. Review.


The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.

Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA.

Psychosom Med. 2017 Oct;79(8):936-946. doi: 10.1097/PSY.0000000000000512.


Coupling Targeted and Untargeted Mass Spectrometry for Metabolome-Microbiome-Wide Association Studies of Human Fecal Samples.

Melnik AV, da Silva RR, Hyde ER, Aksenov AA, Vargas F, Bouslimani A, Protsyuk I, Jarmusch AK, Tripathi A, Alexandrov T, Knight R, Dorrestein PC.

Anal Chem. 2017 Jul 18;89(14):7549-7559. doi: 10.1021/acs.analchem.7b01381. Epub 2017 Jul 6.


Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic.

Carlson JM, Leonard AB, Hyde ER, Petrosino JF, Primm TP.

Infect Drug Resist. 2017 May 9;10:143-154. doi: 10.2147/IDR.S129055. eCollection 2017.


The Microbiome and Human Biology.

Knight R, Callewaert C, Marotz C, Hyde ER, Debelius JW, McDonald D, Sogin ML.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:65-86. doi: 10.1146/annurev-genom-083115-022438. Epub 2017 Mar 20. Review.


Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.

Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R.

mSystems. 2017 Mar 7;2(2). pii: e00191-16. doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr.


Normalization and microbial differential abundance strategies depend upon data characteristics.

Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R.

Microbiome. 2017 Mar 3;5(1):27. doi: 10.1186/s40168-017-0237-y.


Balance Trees Reveal Microbial Niche Differentiation.

Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R.

mSystems. 2017 Jan 17;2(1). pii: e00162-16. doi: 10.1128/mSystems.00162-16. eCollection 2017 Jan-Feb.


Tracking Human Gut Microbiome Changes Resulting from a Colonoscopy.

Smarr L, Hyde ER, McDonald D, Sandborn WJ, Knight R.

Methods Inf Med. 2017;56(6):442-447. doi: 10.3414/ME17-01-0036. Epub 2018 Feb 10. No abstract available.


Biophysical Modeling to Determine the Optimization of Left Ventricular Pacing Site and AV/VV Delays in the Acute and Chronic Phase of Cardiac Resynchronization Therapy.

Lee AW, Crozier A, Hyde ER, Lamata P, Truong M, Sohal M, Jackson T, Behar JM, Claridge S, Shetty A, Sammut E, Plank G, Rinaldi CA, Niederer S.

J Cardiovasc Electrophysiol. 2017 Feb;28(2):208-215. doi: 10.1111/jce.13134. Epub 2017 Jan 14.


The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat.

Hyde ER, Navas-Molina JA, Song SJ, Kueneman JG, Ackermann G, Cardona C, Humphrey G, Boyer D, Weaver T, Mendelson JR 3rd, McKenzie VJ, Gilbert JA, Knight R.

mSystems. 2016 Aug 2;1(4). pii: e00046-16. eCollection 2016 Jul-Aug.


From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.


Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.

Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, Apprill A, Knight R.

mSystems. 2015 Dec 22;1(1). pii: e00009-15. eCollection 2016 Jan-Feb.


Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks.

Vázquez-Baeza Y, Hyde ER, Suchodolski JS, Knight R.

Nat Microbiol. 2016 Oct 3;1:16177. doi: 10.1038/nmicrobiol.2016.177.


Improvement of Right Ventricular Hemodynamics with Left Ventricular Endocardial Pacing during Cardiac Resynchronization Therapy.

Hyde ER, Behar JM, Crozier A, Claridge S, Jackson T, Sohal M, Gill JS, O'Neill MD, Razavi R, Niederer SA, Rinaldi CA.

Pacing Clin Electrophysiol. 2016 Jun;39(6):531-41. doi: 10.1111/pace.12854. Epub 2016 May 9.


The impact of beat-to-beat variability in optimising the acute hemodynamic response in cardiac resynchronisation therapy.

Niederer S, Walker C, Crozier A, Hyde ER, Blazevic B, Behar JM, Claridge S, Sohal M, Shetty A, Jackson T, Rinaldi C.

Clin Trials Regul Sci Cardiol. 2015 Dec;12:18-22.


Microbial community assembly and metabolic function during mammalian corpse decomposition.

Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R.

Science. 2016 Jan 8;351(6269):158-62. doi: 10.1126/science.aad2646. Epub 2015 Dec 10.


Euphorbia plant latex is inhabited by diverse microbial communities.

Gunawardana M, Hyde ER, Lahmeyer S, Dorsey BL, La Val TP, Mullen M, Yoo J, Knight R, Baum MM.

Am J Bot. 2015 Dec;102(12):1966-77. doi: 10.3732/ajb.1500223. Epub 2015 Dec 11.


Factors determining the magnitude of the pre-ejection leftward septal motion in left bundle branch block.

Remme EW, Niederer S, Gjesdal O, Russell K, Hyde ER, Smith N, Smiseth OA.

Europace. 2016 Dec;18(12):1905-1913. doi: 10.1093/europace/euv381. Epub 2015 Nov 26.


The host effects of Gambusia affinis with an antibiotic-disrupted microbiome.

Carlson JM, Hyde ER, Petrosino JF, Manage ABW, Primm TP.

Comp Biochem Physiol C Toxicol Pharmacol. 2015 Dec;178:163-168. doi: 10.1016/j.cbpc.2015.10.004. Epub 2015 Oct 18.


Beneficial Effect on Cardiac Resynchronization From Left Ventricular Endocardial Pacing Is Mediated by Early Access to High Conduction Velocity Tissue: Electrophysiological Simulation Study.

Hyde ER, Behar JM, Claridge S, Jackson T, Lee AW, Remme EW, Sohal M, Plank G, Razavi R, Rinaldi CA, Niederer SA.

Circ Arrhythm Electrophysiol. 2015 Oct;8(5):1164-72. doi: 10.1161/CIRCEP.115.002677. Epub 2015 Jul 1.


Measurement and modeling of coronary blood flow.

Sinclair MD, Lee J, Cookson AN, Rivolo S, Hyde ER, Smith NP.

Wiley Interdiscip Rev Syst Biol Med. 2015 Nov-Dec;7(6):335-56. doi: 10.1002/wsbm.1309. Epub 2015 Jun 30. Review.


Ribosomal RNA, the lens into life.

McDonald D, Xu Z, Hyde ER, Knight R.

RNA. 2015 Apr;21(4):692-4. doi: 10.1261/rna.050799.115. No abstract available.


Tracking down the sources of experimental contamination in microbiome studies.

Weiss S, Amir A, Hyde ER, Metcalf JL, Song SJ, Knight R.

Genome Biol. 2014 Dec 17;15(12):564. doi: 10.1186/s13059-014-0564-2.


Initial insights into bacterial succession during human decomposition.

Hyde ER, Haarmann DP, Petrosino JF, Lynne AM, Bucheli SR.

Int J Legal Med. 2015 May;129(3):661-71. doi: 10.1007/s00414-014-1128-4. Epub 2014 Nov 28.


Characterization of the rat oral microbiome and the effects of dietary nitrate.

Hyde ER, Luk B, Cron S, Kusic L, McCue T, Bauch T, Kaplan H, Tribble G, Petrosino JF, Bryan NS.

Free Radic Biol Med. 2014 Dec;77:249-57. doi: 10.1016/j.freeradbiomed.2014.09.017. Epub 2014 Oct 12.


Metagenomic analysis of nitrate-reducing bacteria in the oral cavity: implications for nitric oxide homeostasis.

Hyde ER, Andrade F, Vaksman Z, Parthasarathy K, Jiang H, Parthasarathy DK, Torregrossa AC, Tribble G, Kaplan HB, Petrosino JF, Bryan NS.

PLoS One. 2014 Mar 26;9(3):e88645. doi: 10.1371/journal.pone.0088645. eCollection 2014.


Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis.

Hyde ER, Petrosino JF, Piedra PA, Camargo CA Jr, Espinola JA, Mansbach JM.

J Allergy Clin Immunol. 2014 Apr;133(4):1220-2. doi: 10.1016/j.jaci.2013.10.049. Epub 2013 Dec 22. No abstract available.


Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders.

Hsiao EY, McBride SW, Hsien S, Sharon G, Hyde ER, McCue T, Codelli JA, Chow J, Reisman SE, Petrosino JF, Patterson PH, Mazmanian SK.

Cell. 2013 Dec 19;155(7):1451-63. doi: 10.1016/j.cell.2013.11.024. Epub 2013 Dec 5.


Multi-scale parameterisation of a myocardial perfusion model using whole-organ arterial networks.

Hyde ER, Cookson AN, Lee J, Michler C, Goyal A, Sochi T, Chabiniok R, Sinclair M, Nordsletten DA, Spaan J, van den Wijngaard JP, Siebes M, Smith NP.

Ann Biomed Eng. 2014 Apr;42(4):797-811. doi: 10.1007/s10439-013-0951-y. Epub 2013 Dec 3.


The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition.

Hyde ER, Haarmann DP, Lynne AM, Bucheli SR, Petrosino JF.

PLoS One. 2013 Oct 30;8(10):e77733. doi: 10.1371/journal.pone.0077733. eCollection 2013.


Myocardial perfusion distribution and coronary arterial pressure and flow signals: clinical relevance in relation to multiscale modeling, a review.

Nolte F, Hyde ER, Rolandi C, Lee J, van Horssen P, Asrress K, van den Wijngaard JP, Cookson AN, van de Hoef T, Chabiniok R, Razavi R, Michler C, Hautvast GL, Piek JJ, Breeuwer M, Siebes M, Nagel E, Smith NP, Spaan JA.

Med Biol Eng Comput. 2013 Nov;51(11):1271-86. doi: 10.1007/s11517-013-1088-8. Epub 2013 Jul 27. Review.


Parameterisation of multi-scale continuum perfusion models from discrete vascular networks.

Hyde ER, Michler C, Lee J, Cookson AN, Chabiniok R, Nordsletten DA, Smith NP.

Med Biol Eng Comput. 2013 May;51(5):557-70. doi: 10.1007/s11517-012-1025-2. Epub 2013 Jan 24.


A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.

Noval Rivas M, Burton OT, Wise P, Zhang YQ, Hobson SA, Garcia Lloret M, Chehoud C, Kuczynski J, DeSantis T, Warrington J, Hyde ER, Petrosino JF, Gerber GK, Bry L, Oettgen HC, Mazmanian SK, Chatila TA.

J Allergy Clin Immunol. 2013 Jan;131(1):201-12. doi: 10.1016/j.jaci.2012.10.026. Epub 2012 Nov 30.

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