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Inference of Significant Microbial Interactions From Longitudinal Metagenomics Data.

Gao X, Huynh BT, Guillemot D, Glaser P, Opatowski L.

Front Microbiol. 2018 Oct 16;9:2319. doi: 10.3389/fmicb.2018.02319. eCollection 2018.


ARbis Pictus: A Study of Vocabulary Learning with Augmented Reality.

Ibrahim A, Huynh B, Downey J, Hollerer T, Chun D, O'donovan J.

IEEE Trans Vis Comput Graph. 2018 Nov;24(11):2867-2874. doi: 10.1109/TVCG.2018.2868568. Epub 2018 Sep 10.


The tactile receptive fields of freely moving Caenorhabditis elegans nematodes.

Mazzochette EA, Nekimken AL, Loizeau F, Whitworth J, Huynh B, Goodman MB, Pruitt BL.

Integr Biol (Camb). 2018 Aug 1;10(8):450-463. doi: 10.1039/c8ib00045j. Epub 2018 Jul 20.


In Vitro Tests for Aerosol Deposition. VI: Realistic Testing with Different Mouth-Throat Models and In Vitro-In Vivo Correlations for a Dry Powder Inhaler, Metered Dose Inhaler, and Soft Mist Inhaler.

Wei X, Hindle M, Kaviratna A, Huynh BK, Delvadia RR, Sandell D, Byron PR.

J Aerosol Med Pulm Drug Deliv. 2018 Jun 7. doi: 10.1089/jamp.2018.1454. [Epub ahead of print]


Bacterial Infections in Neonates, Madagascar, 2012-2014.

Huynh BT, Kermorvant-Duchemin E, Herindrainy P, Padget M, Rakotoarimanana FMJ, Feno H, Hariniaina-Ratsima E, Raheliarivao T, Ndir A, Goyet S, Piola P, Randrianirina F, Garin B, Collard JM, Guillemot D, Delarocque-Astagneau E.

Emerg Infect Dis. 2018 Apr;24(4):710-717. doi: 10.3201/eid2404.161977.


Acquisition of extended spectrum beta-lactamase-producing enterobacteriaceae in neonates: A community based cohort in Madagascar.

Herindrainy P, Rabenandrasana MAN, Andrianirina ZZ, Rakotoarimanana FMJ, Padget M, de Lauzanne A, Ndir A, Kermorvant-Duchemin E, Garin B, Piola P, Collard JM, Guillemot D, Huynh BT, Delarocque-Astagneau E; BIRDY study group.

PLoS One. 2018 Mar 1;13(3):e0193325. doi: 10.1371/journal.pone.0193325. eCollection 2018.


A multi-parent advanced generation inter-cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.).

Huynh BL, Ehlers JD, Huang BE, Muñoz-Amatriaín M, Lonardi S, Santos JRP, Ndeve A, Batieno BJ, Boukar O, Cisse N, Drabo I, Fatokun C, Kusi F, Agyare RY, Guo YN, Herniter I, Lo S, Wanamaker SI, Xu S, Close TJ, Roberts PA.

Plant J. 2018 Mar;93(6):1129-1142. doi: 10.1111/tpj.13827. Epub 2018 Feb 24.


Combating Global Antibiotic Resistance: Emerging One Health Concerns in Lower- and Middle-Income Countries.

Nadimpalli M, Delarocque-Astagneau E, Love DC, Price LB, Huynh BT, Collard JM, Lay KS, Borand L, Ndir A, Walsh TR, Guillemot D; Bacterial Infections and antibiotic-Resistant Diseases among Young children in low-income countries (BIRDY) Study Group .

Clin Infect Dis. 2018 Mar 5;66(6):963-969. doi: 10.1093/cid/cix879.


IVF Transfer of Fresh or Frozen Embryos in Women without Polycystic Ovaries.

Vuong LN, Dang VQ, Ho TM, Huynh BG, Ha DT, Pham TD, Nguyen LK, Norman RJ, Mol BW.

N Engl J Med. 2018 Jan 11;378(2):137-147. doi: 10.1056/NEJMoa1703768.


QTL mapping and transcriptome analysis of cowpea reveals candidate genes for root-knot nematode resistance.

Santos JRP, Ndeve AD, Huynh BL, Matthews WC, Roberts PA.

PLoS One. 2018 Jan 4;13(1):e0189185. doi: 10.1371/journal.pone.0189185. eCollection 2018.


Deep learning in breast cancer risk assessment: evaluation of convolutional neural networks on a clinical dataset of full-field digital mammograms.

Li H, Giger ML, Huynh BQ, Antropova NO.

J Med Imaging (Bellingham). 2017 Oct;4(4):041304. doi: 10.1117/1.JMI.4.4.041304. Epub 2017 Sep 13.


The Development and Validation of an In Vitro Airway Model to Assess Realistic Airway Deposition and Drug Permeation Behavior of Orally Inhaled Products Across Synthetic Membranes.

Huynh BK, Traini D, Farkas DR, Longest PW, Hindle M, Young PM.

J Aerosol Med Pulm Drug Deliv. 2018 Apr;31(2):103-108. doi: 10.1089/jamp.2017.1400. Epub 2017 Sep 7.


A deep feature fusion methodology for breast cancer diagnosis demonstrated on three imaging modality datasets.

Antropova N, Huynh BQ, Giger ML.

Med Phys. 2017 Oct;44(10):5162-5171. doi: 10.1002/mp.12453. Epub 2017 Aug 12.


New erythritol derivatives from the fertile form of Roccella montagnei.

Duong TH, Huynh BLC, Chavasiri W, Chollet-Krugler M, Nguyen VK, Nguyen THT, Hansen PE, Le Pogam P, Thüs H, Boustie J, Nguyen KPP.

Phytochemistry. 2017 May;137:156-164. doi: 10.1016/j.phytochem.2017.02.012. Epub 2017 Feb 17.


Diagnosing colorectal medullary carcinoma: interobserver variability and clinicopathological implications.

Lee LH, Yantiss RK, Sadot E, Ren B, Calvacanti MS, Hechtman JF, Ivelja S, Huynh B, Xue Y, Shitilbans T, Guend H, Stadler ZK, Weiser MR, Vakiani E, Gönen M, Klimstra DS, Shia J.

Hum Pathol. 2017 Apr;62:74-82. doi: 10.1016/j.humpath.2016.12.013. Epub 2016 Dec 26.


Genome-wide association mapping and agronomic impact of cowpea root architecture.

Burridge JD, Schneider HM, Huynh BL, Roberts PA, Bucksch A, Lynch JP.

Theor Appl Genet. 2017 Feb;130(2):419-431. doi: 10.1007/s00122-016-2823-y. Epub 2016 Nov 18.


Genome resources for climate-resilient cowpea, an essential crop for food security.

Muñoz-Amatriaín M, Mirebrahim H, Xu P, Wanamaker SI, Luo M, Alhakami H, Alpert M, Atokple I, Batieno BJ, Boukar O, Bozdag S, Cisse N, Drabo I, Ehlers JD, Farmer A, Fatokun C, Gu YQ, Guo YN, Huynh BL, Jackson SA, Kusi F, Lawley CT, Lucas MR, Ma Y, Timko MP, Wu J, You F, Barkley NA, Roberts PA, Lonardi S, Close TJ.

Plant J. 2017 Mar;89(5):1042-1054. doi: 10.1111/tpj.13404. Epub 2017 Feb 3.


Genomic regions, cellular components and gene regulatory basis underlying pod length variations in cowpea (V. unguiculata L. Walp).

Xu P, Wu X, Muñoz-Amatriaín M, Wang B, Wu X, Hu Y, Huynh BL, Close TJ, Roberts PA, Zhou W, Lu Z, Li G.

Plant Biotechnol J. 2017 May;15(5):547-557. doi: 10.1111/pbi.12639. Epub 2016 Oct 17.


Digital mammographic tumor classification using transfer learning from deep convolutional neural networks.

Huynh BQ, Li H, Giger ML.

J Med Imaging (Bellingham). 2016 Jul;3(3):034501. doi: 10.1117/1.JMI.3.3.034501. Epub 2016 Aug 22.


Fetal Growth Restriction Is Associated With Malaria in Pregnancy: A Prospective Longitudinal Study in Benin.

Briand V, Saal J, Ghafari C, Huynh BT, Fievet N, Schmiegelow C, Massougbodji A, Deloron P, Zeitlin J, Cot M.

J Infect Dis. 2016 Aug 1;214(3):417-25. doi: 10.1093/infdis/jiw158. Epub 2016 Apr 18.


Genomic Tools in Cowpea Breeding Programs: Status and Perspectives.

Boukar O, Fatokun CA, Huynh BL, Roberts PA, Close TJ.

Front Plant Sci. 2016 Jun 3;7:757. doi: 10.3389/fpls.2016.00757. eCollection 2016. Review.


Immediate Closures and Violations Identified During Routine Inspections of Public Aquatic Facilities - Network for Aquatic Facility Inspection Surveillance, Five States, 2013.

Hlavsa MC, Gerth TR, Collier SA, Dunbar EL, Rao G, Epperson G, Bramlett B, Ludwig DF, Gomez D, Stansbury MM, Miller F, Warren J, Nichol J, Bowman H, Huynh BA, Loewe KM, Vincent B, Tarrier AL, Shay T, Wright R, Brown AC, Kunz JM, Fullerton KE, Cope JR, Beach MJ.

MMWR Surveill Summ. 2016 May 20;65(5):1-26. doi: 10.15585/mmwr.ss6505a1.


Bacterial neonatal sepsis and antibiotic resistance in low-income countries.

Huynh BT, Padget M, Garin B, Delarocque-Astagneau E, Guillemot D; BIRDY study group.

Lancet. 2016 Feb 6;387(10018):533-4. doi: 10.1016/S0140-6736(16)00220-8. No abstract available.


A major QTL corresponding to the Rk locus for resistance to root-knot nematodes in cowpea (Vigna unguiculata L. Walp.).

Huynh BL, Matthews WC, Ehlers JD, Lucas MR, Santos JR, Ndeve A, Close TJ, Roberts PA.

Theor Appl Genet. 2016 Jan;129(1):87-95. doi: 10.1007/s00122-015-2611-0. Epub 2015 Oct 8.


New phenolic compounds from the lichen Parmotrema praesorediosum (Nyl.) Hale (Parmeliaceae).

Huynh BL, Le DH, Takenaka Y, Tanahashi T, Nguyen KP.

Magn Reson Chem. 2016 Jan;54(1):81-7. doi: 10.1002/mrc.4316. Epub 2015 Aug 25. No abstract available.


Design and in vivo evaluation of more efficient and selective deep brain stimulation electrodes.

Howell B, Huynh B, Grill WM.

J Neural Eng. 2015 Aug;12(4):046030. doi: 10.1088/1741-2560/12/4/046030. Epub 2015 Jul 14.


Burden of bacterial resistance among neonatal infections in low income countries: how convincing is the epidemiological evidence?

Huynh BT, Padget M, Garin B, Herindrainy P, Kermorvant-Duchemin E, Watier L, Guillemot D, Delarocque-Astagneau E.

BMC Infect Dis. 2015 Mar 15;15:127. doi: 10.1186/s12879-015-0843-x. Review.


Introgression of a rare haplotype from Southeastern Africa to breed California blackeyes with larger seeds.

Lucas MR, Huynh BL, Roberts PA, Close TJ.

Front Plant Sci. 2015 Mar 9;6:126. doi: 10.3389/fpls.2015.00126. eCollection 2015.


Colonization of extended-spectrum-β-lactamase- and NDM-1-producing Enterobacteriaceae among pregnant women in the community in a low-income country: a potential reservoir for transmission of multiresistant Enterobacteriaceae to neonates.

Chereau F, Herindrainy P, Garin B, Huynh BT, Randrianirina F, Padget M, Piola P, Guillemot D, Delarocque-Astagneau E.

Antimicrob Agents Chemother. 2015;59(6):3652-5. doi: 10.1128/AAC.00029-15. Epub 2015 Apr 6.


Genetic mapping and legume synteny of aphid resistance in African cowpea (Vigna unguiculata L. Walp.) grown in California.

Huynh BL, Ehlers JD, Ndeve A, Wanamaker S, Lucas MR, Close TJ, Roberts PA.

Mol Breed. 2015;35:36. Epub 2015 Jan 21.


Burden of malaria in early pregnancy: a neglected problem?

Huynh BT, Cottrell G, Cot M, Briand V.

Clin Infect Dis. 2015 Feb 15;60(4):598-604. doi: 10.1093/cid/ciu848. Epub 2014 Oct 30. Review.


Genotyping by high-resolution melting analysis.

Tucker EJ, Huynh BL.

Methods Mol Biol. 2014;1145:59-66. doi: 10.1007/978-1-4939-0446-4_5.


Submicroscopic infections with Plasmodium falciparum during pregnancy and their association with circulating cytokine, chemokine, and cellular profiles.

Ibitokou SA, Boström S, Brutus L, Tuikue Ndam N, Vianou B, Agbowaï C, Amadoudji Zin M, Huynh BT, Massougbodji A, Deloron P, Troye-Blomberg M, Fievet N, Luty AJ.

Clin Vaccine Immunol. 2014 Jun;21(6):859-66. doi: 10.1128/CVI.00009-14. Epub 2014 Apr 9. Erratum in: Clin Vaccine Immunol. 2014 Oct;21(10):1468.


MR arthrography: impact of steroids, local anesthetics, and iodinated contrast material on gadolinium signal intensity in phantoms at 1.5 and 3.0 T.

Ugas MA, Huynh BH, Fox MG, Patrie JT, Gaskin CM.

Radiology. 2014 Aug;272(2):475-83. doi: 10.1148/radiol.14132352. Epub 2014 Mar 23.


Combined Mössbauer spectroscopic, multi-edge X-ray absorption spectroscopic, and density functional theoretical study of the radical SAM enzyme spore photoproduct lyase.

Silver SC, Gardenghi DJ, Naik SG, Shepard EM, Huynh BH, Szilagyi RK, Broderick JB.

J Biol Inorg Chem. 2014 Mar;19(3):465-83. doi: 10.1007/s00775-014-1104-y. Epub 2014 Feb 16.


Impact of pregnancy-associated malaria on infant malaria infection in southern Benin.

Borgella S, Fievet N, Huynh BT, Ibitokou S, Hounguevou G, Affedjou J, Sagbo JC, Houngbegnon P, Guezo-Mévo B, Massougbodji A, Luty AJ, Cot M, Deloron P.

PLoS One. 2013 Nov 13;8(11):e80624. doi: 10.1371/journal.pone.0080624. eCollection 2013.


In vitro evaluation of the effects of human umbilical cord extracts on human fibroblasts, keratinocytes, and melanocytes.

Van Pham P, Dang LT, Dinh UT, Truong HT, Huynh BN, Van Le D, Phan NK.

In Vitro Cell Dev Biol Anim. 2014 Apr;50(4):321-30. doi: 10.1007/s11626-013-9706-1. Epub 2013 Oct 26.


Arabidopsis thaliana Nfu2 accommodates [2Fe-2S] or [4Fe-4S] clusters and is competent for in vitro maturation of chloroplast [2Fe-2S] and [4Fe-4S] cluster-containing proteins.

Gao H, Subramanian S, Couturier J, Naik SG, Kim SK, Leustek T, Knaff DB, Wu HC, Vignols F, Huynh BH, Rouhier N, Johnson MK.

Biochemistry. 2013 Sep 24;52(38):6633-45. doi: 10.1021/bi4007622. Epub 2013 Sep 13.


Monothiol glutaredoxins can bind linear [Fe3S4]+ and [Fe4S4]2+ clusters in addition to [Fe2S2]2+ clusters: spectroscopic characterization and functional implications.

Zhang B, Bandyopadhyay S, Shakamuri P, Naik SG, Huynh BH, Couturier J, Rouhier N, Johnson MK.

J Am Chem Soc. 2013 Oct 9;135(40):15153-64. doi: 10.1021/ja407059n. Epub 2013 Sep 26.


Genetic characterization of Plasmodium falciparum allelic variants infecting mothers at delivery and their children during their first plasmodial infections.

Dechavanne C, Pierrat C, Renard E, Costes B, Martin N, Ladekpo R, Ahouangninou C, Alvarez VM, Huynh BT, Garcia A, Migot-Nabias F.

Infect Genet Evol. 2013 Dec;20:16-25. doi: 10.1016/j.meegid.2013.07.026. Epub 2013 Aug 8.


Inhibition of enhancer of zeste homolog 2 (EZH2) expression is associated with decreased tumor cell proliferation, migration, and invasion in endometrial cancer cell lines.

Eskander RN, Ji T, Huynh B, Wardeh R, Randall LM, Hoang B.

Int J Gynecol Cancer. 2013 Jul;23(6):997-1005. doi: 10.1097/IGC.0b013e318296a265.


[Appraisal of the optical diagnostic technique for cervical intra-epithelial neoplasia by polarimetric imaging "Polcolpo". Comparison with colposcopic and histological diagnoses by biopsy].

Nazac A, Pierangelo A, Vercambre M, Huynh B, Cohen H, Coudert M, Mallet A, De Martino A.

J Gynecol Obstet Biol Reprod (Paris). 2013 Sep;42(5):464-72. doi: 10.1016/j.jgyn.2013.04.006. Epub 2013 Jun 6. French.


NLRP3 deletion protects from hyperoxia-induced acute lung injury.

Fukumoto J, Fukumoto I, Parthasarathy PT, Cox R, Huynh B, Ramanathan GK, Venugopal RB, Allen-Gipson DS, Lockey RF, Kolliputi N.

Am J Physiol Cell Physiol. 2013 Jul 15;305(2):C182-9. doi: 10.1152/ajpcell.00086.2013. Epub 2013 May 1.


Association Studies and Legume Synteny Reveal Haplotypes Determining Seed Size in Vigna unguiculata.

Lucas MR, Huynh BL, da Silva Vinholes P, Cisse N, Drabo I, Ehlers JD, Roberts PA, Close TJ.

Front Plant Sci. 2013 Apr 15;4:95. doi: 10.3389/fpls.2013.00095. eCollection 2013.


Malaria and gravidity interact to modify maternal haemoglobin concentrations during pregnancy.

Ouédraogo S, Bodeau-Livinec F, Briand V, Huynh BT, Koura GK, Accrombessi MM, Fievet N, Massougbodji A, Deloron P, Cot M.

Malar J. 2012 Oct 22;11:348. doi: 10.1186/1475-2875-11-348.


Spectroscopic and functional characterization of iron-bound forms of Azotobacter vinelandii (Nif)IscA.

Mapolelo DT, Zhang B, Naik SG, Huynh BH, Johnson MK.

Biochemistry. 2012 Oct 16;51(41):8056-70. doi: 10.1021/bi300664j. Epub 2012 Oct 4.


Spectroscopic and functional characterization of iron-sulfur cluster-bound forms of Azotobacter vinelandii (Nif)IscA.

Mapolelo DT, Zhang B, Naik SG, Huynh BH, Johnson MK.

Biochemistry. 2012 Oct 16;51(41):8071-84. doi: 10.1021/bi3006658. Epub 2012 Oct 4.


MicroRNA 16 modulates epithelial sodium channel in human alveolar epithelial cells.

Tamarapu Parthasarathy P, Galam L, Huynh B, Yunus A, Abuelenen T, Castillo A, Kollongod Ramanathan G, Cox R Jr, Kolliputi N.

Biochem Biophys Res Commun. 2012 Sep 21;426(2):203-8. doi: 10.1016/j.bbrc.2012.08.063. Epub 2012 Aug 23.


Clusters of genes encoding fructan biosynthesizing enzymes in wheat and barley.

Huynh BL, Mather DE, Schreiber AW, Toubia J, Baumann U, Shoaei Z, Stein N, Ariyadasa R, Stangoulis JC, Edwards J, Shirley N, Langridge P, Fleury D.

Plant Mol Biol. 2012 Oct;80(3):299-314. doi: 10.1007/s11103-012-9949-3. Epub 2012 Aug 3.


[Prevalence of HPV-induced lesions in men: a study from 246 heterosexual couples].

Aynaud O, Huynh B, Bergeron C.

Gynecol Obstet Fertil. 2012 Jul-Aug;40(7-8):406-10. doi: 10.1016/j.gyobfe.2011.10.015. Epub 2012 Jun 21. French.


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