Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 64

1.

Rapid analysis of metagenomic data using signature-based clustering.

Chappell T, Geva S, Hogan JM, Huygens F, Rathnayake IU, Rudd S, Kelly W, Perrin D.

BMC Bioinformatics. 2018 Dec 21;19(Suppl 20):509. doi: 10.1186/s12859-018-2540-4.

2.

Fallopian tube microbiota: evidence beyond DNA.

Pelzer ES, Willner D, Huygens F, Hafner LM, Lourie R, Buttini M.

Future Microbiol. 2018 Sep;13:1355-1361. doi: 10.2217/fmb-2018-0118. Epub 2018 Sep 26.

PMID:
30256134
3.

The fallopian tube microbiome: implications for reproductive health.

Pelzer ES, Willner D, Buttini M, Hafner LM, Theodoropoulos C, Huygens F.

Oncotarget. 2018 Apr 20;9(30):21541-21551. doi: 10.18632/oncotarget.25059. eCollection 2018 Apr 20.

4.

Molecular Prediction of the O157:H-Negative Phenotype Prevalent in Australian Shiga Toxin-Producing Escherichia coli Cases Improves Concordance of In Silico Serotyping with Phenotypic Motility.

Pintara AP, Guglielmino CJD, Rathnayake IU, Huygens F, Jennison AV.

J Clin Microbiol. 2018 Mar 26;56(4). pii: e01906-17. doi: 10.1128/JCM.01906-17. Print 2018 Apr.

5.

A role for the endometrial microbiome in dysfunctional menstrual bleeding.

Pelzer ES, Willner D, Buttini M, Huygens F.

Antonie Van Leeuwenhoek. 2018 Jun;111(6):933-943. doi: 10.1007/s10482-017-0992-6. Epub 2018 Jan 3.

PMID:
29299770
6.

Pseudomonas aeruginosa Trent and zinc homeostasis.

Davies CB, Harrison MD, Huygens F.

FEMS Microbiol Lett. 2017 Sep 1;364(16). doi: 10.1093/femsle/fnx151.

PMID:
28854710
7.

Incidence and risk factors for developing infection in patients presenting with uninfected diabetic foot ulcers.

Jia L, Parker CN, Parker TJ, Kinnear EM, Derhy PH, Alvarado AM, Huygens F, Lazzarini PA; Diabetic Foot Working Group, Queensland Statewide Diabetes Clinical Network (Australia).

PLoS One. 2017 May 17;12(5):e0177916. doi: 10.1371/journal.pone.0177916. eCollection 2017.

8.

Culture-independent detection of chlorhexidine resistance genes qacA/B and smr in bacterial DNA recovered from body sites treated with chlorhexidine-containing dressings.

Choudhury MA, Sidjabat HE, Rathnayake IU, Gavin N, Chan RJ, Marsh N, Banu S, Huygens F, Paterson DL, Rickard CM, McMillan DJ.

J Med Microbiol. 2017 Apr;66(4):447-453. doi: 10.1099/jmm.0.000463.

PMID:
28463667
9.

Antimicrobial and Immunomodulatory Surface-Functionalized Electrospun Membranes for Bone Regeneration.

Mathew A, Vaquette C, Hashimi S, Rathnayake I, Huygens F, Hutmacher DW, Ivanovski S.

Adv Healthc Mater. 2017 May;6(10). doi: 10.1002/adhm.201601345. Epub 2017 Feb 27.

PMID:
28240815
10.

Pan-proteomics, a concept for unifying quantitative proteome measurements when comparing closely-related bacterial strains.

Broadbent JA, Broszczak DA, Tennakoon IU, Huygens F.

Expert Rev Proteomics. 2016;13(4):355-65. doi: 10.1586/14789450.2016.1155986. Epub 2016 Mar 7. Review.

PMID:
26889693
11.

Staphylococcus epidermidis as a cause of bacteremia.

Kleinschmidt S, Huygens F, Faoagali J, Rathnayake IU, Hafner LM.

Future Microbiol. 2015;10(11):1859-79. doi: 10.2217/fmb.15.98. Epub 2015 Oct 30. Review.

PMID:
26517189
12.

CRISPR Diversity in E. coli Isolates from Australian Animals, Humans and Environmental Waters.

Sheludchenko MS, Huygens F, Stratton H, Hargreaves M.

PLoS One. 2015 May 6;10(5):e0124090. doi: 10.1371/journal.pone.0124090. eCollection 2015.

13.

Modified MLVA for Genotyping Queensland Invasive Streptococcus pneumoniae.

Rayner RE, Savill J, Hafner LM, Huygens F.

PLoS One. 2015 Apr 29;10(4):e0121870. doi: 10.1371/journal.pone.0121870. eCollection 2015.

14.

Genotyping Streptococcus pneumoniae.

Rayner RE, Savill J, Hafner LM, Huygens F.

Future Microbiol. 2015;10(4):653-64. doi: 10.2217/fmb.14.153. Review.

PMID:
25865199
15.

Choose wisely: Network, ontology and annotation resources for the analysis of Staphylococcus aureus omics data.

Broadbent JA, Sampson DL, Broszczak DA, Upton Z, Huygens F.

Int J Med Microbiol. 2015 May;305(3):339-47. doi: 10.1016/j.ijmm.2015.02.001. Epub 2015 Feb 14.

PMID:
25739783
16.

The impact of flood and post-flood cleaning on airborne microbiological and particle contamination in residential houses.

He C, Salonen H, Ling X, Crilley L, Jayasundara N, Cheung HC, Hargreaves M, Huygens F, Knibbs LD, Ayoko GA, Morawska L.

Environ Int. 2014 Aug;69:9-17. doi: 10.1016/j.envint.2014.04.001. Epub 2014 May 4.

PMID:
24785990
17.

Strain variation amongst clinical and potable water isolates of M. kansasii using automated repetitive unit PCR.

Thomson R, Tolson C, Huygens F, Hargreaves M.

Int J Med Microbiol. 2014 May;304(3-4):484-9. doi: 10.1016/j.ijmm.2014.02.004. Epub 2014 Feb 19.

PMID:
24636860
18.

Heterogeneity of clinical and environmental isolates of Mycobacterium fortuitum using repetitive element sequence-based PCR: municipal water an unlikely source of community-acquired infections.

Thomson RM, Tolson CE, Carter R, Huygens F, Hargreaves M.

Epidemiol Infect. 2014 Oct;142(10):2057-64. doi: 10.1017/S0950268813003257. Epub 2014 Jan 7.

PMID:
24398184
19.

Firmicutes dominate the bacterial taxa within sugar-cane processing plants.

Sharmin F, Wakelin S, Huygens F, Hargreaves M.

Sci Rep. 2013 Nov 1;3:3107. doi: 10.1038/srep03107.

20.

Replacement of healthcare-associated MRSA by community-associated MRSA in Queensland: confirmation by genotyping.

Nimmo GR, Bergh H, Nakos J, Whiley D, Marquess J, Huygens F, Paterson DL.

J Infect. 2013 Nov;67(5):439-47. doi: 10.1016/j.jinf.2013.07.020. Epub 2013 Jul 16.

PMID:
23872210
21.

Typing early Australian healthcare-associated MRSA: confirmation of major clones and emergence of ST1-MRSA-IV and novel ST2249-MRSA-III.

Lancashire JF, Jones A, Bergh H, Huygens F, Nimmo GR.

Pathology. 2013 Aug;45(5):492-4. doi: 10.1097/PAT.0b013e3283632667.

PMID:
23856840
22.

Isolation of nontuberculous mycobacteria (NTM) from household water and shower aerosols in patients with pulmonary disease caused by NTM.

Thomson R, Tolson C, Carter R, Coulter C, Huygens F, Hargreaves M.

J Clin Microbiol. 2013 Sep;51(9):3006-11. doi: 10.1128/JCM.00899-13. Epub 2013 Jul 10.

23.

Mycobacterium abscessus isolated from municipal water - a potential source of human infection.

Thomson R, Tolson C, Sidjabat H, Huygens F, Hargreaves M.

BMC Infect Dis. 2013 May 25;13:241. doi: 10.1186/1471-2334-13-241.

24.

Factors associated with the isolation of Nontuberculous mycobacteria (NTM) from a large municipal water system in Brisbane, Australia.

Thomson RM, Carter R, Tolson C, Coulter C, Huygens F, Hargreaves M.

BMC Microbiol. 2013 Apr 22;13:89. doi: 10.1186/1471-2180-13-89.

25.

Antibiotic resistance and virulence traits in clinical and environmental Enterococcus faecalis and Enterococcus faecium isolates.

Rathnayake IU, Hargreaves M, Huygens F.

Syst Appl Microbiol. 2012 Jul;35(5):326-33. doi: 10.1016/j.syapm.2012.05.004. Epub 2012 Jun 26.

PMID:
22742879
26.

Human-specific E.coli single nucleotide polymorphism (SNP) genotypes detected in a South East Queensland waterway, Australia.

Sheludchenko MS, Huygens F, Hargreaves MH.

Environ Sci Technol. 2011 Dec 15;45(24):10331-6. doi: 10.1021/es201599u. Epub 2011 Nov 22.

PMID:
22029388
27.
28.

Diversity of community acquired MRSA carrying the PVL gene in Queensland and New South Wales, Australia.

Costello ME, Huygens F.

Eur J Clin Microbiol Infect Dis. 2011 Oct;30(10):1163-7. doi: 10.1007/s10096-011-1203-4. Epub 2011 Mar 18.

PMID:
21424382
29.

Mycobacterium lentiflavum in drinking water supplies, Australia.

Marshall HM, Carter R, Torbey MJ, Minion S, Tolson C, Sidjabat HE, Huygens F, Hargreaves M, Thomson RM.

Emerg Infect Dis. 2011 Mar;17(3):395-402. doi: 10.3201/eid1703.090948.

30.

Preliminary validation of a novel high-resolution melt-based typing method based on the multilocus sequence typing scheme of Streptococcus pyogenes.

Richardson LJ, Tong SY, Towers RJ, Huygens F, McGregor K, Fagan PK, Currie BJ, Carapetis JR, Giffard PM.

Clin Microbiol Infect. 2011 Sep;17(9):1426-34. doi: 10.1111/j.1469-0691.2010.03433.x. Epub 2011 Feb 25.

31.

Genotyping of Enterococcus faecalis and Enterococcus faecium isolates by use of a set of eight single nucleotide polymorphisms.

Rathnayake IU, Hargreaves M, Huygens F.

J Clin Microbiol. 2011 Jan;49(1):367-72. doi: 10.1128/JCM.01120-10. Epub 2010 Oct 27.

32.

Highly discriminatory single-nucleotide polymorphism interrogation of Escherichia coli by use of allele-specific real-time PCR and eBURST analysis.

Sheludchenko MS, Huygens F, Hargreaves MH.

Appl Environ Microbiol. 2010 Jul;76(13):4337-45. doi: 10.1128/AEM.00128-10. Epub 2010 May 7.

33.

Campylobacter jejuni and Campylobacter coli genotyping by high-resolution melting analysis of a flaA fragment.

Merchant-Patel S, Blackall PJ, Templeton J, Price EP, Tong SY, Huygens F, Giffard PM.

Appl Environ Microbiol. 2010 Jan;76(2):493-9. doi: 10.1128/AEM.01164-09. Epub 2009 Nov 20.

34.

Prevalence and occurrence of zoonotic bacterial pathogens in surface waters determined by quantitative PCR.

Ahmed W, Sawant S, Huygens F, Goonetilleke A, Gardner T.

Water Res. 2009 Nov;43(19):4918-28. doi: 10.1016/j.watres.2009.03.041. Epub 2009 Apr 10.

PMID:
19631959
35.

Prevalence of Staphylococcus aureus strains in an Australian cohort, 1989-2003: evidence for the low prevalence of the toxic shock toxin and Panton-Valentine leukocidin genes.

Schlebusch S, Schooneveldt JM, Huygens F, Nimmo GR.

Eur J Clin Microbiol Infect Dis. 2009 Oct;28(10):1183-9. doi: 10.1007/s10096-009-0761-1. Epub 2009 May 24.

PMID:
19466470
36.

Phylogenetically distinct Staphylococcus aureus lineage prevalent among indigenous communities in northern Australia.

Ng JW, Holt DC, Lilliebridge RA, Stephens AJ, Huygens F, Tong SY, Currie BJ, Giffard PM.

J Clin Microbiol. 2009 Jul;47(7):2295-300. doi: 10.1128/JCM.00122-09. Epub 2009 May 6.

37.

Nasal carriage of Staphylococcus aureus, including community-associated methicillin-resistant strains, in Queensland adults.

Munckhof WJ, Nimmo GR, Schooneveldt JM, Schlebusch S, Stephens AJ, Williams G, Huygens F, Giffard P.

Clin Microbiol Infect. 2009 Feb;15(2):149-55. doi: 10.1111/j.1469-0691.2008.02652.x. Epub 2009 Jan 10. Erratum in: Clin Microbiol Infect. 2009 Mar;15(3):296.

38.

Characterisation of chicken Campylobacter jejuni isolates using resolution optimised single nucleotide polymorphisms and binary gene markers.

Merchant-Patel S, Blackall PJ, Templeton J, Price EP, Miflin JK, Huygens F, Giffard PM.

Int J Food Microbiol. 2008 Dec 10;128(2):304-8. doi: 10.1016/j.ijfoodmicro.2008.09.002. Epub 2008 Sep 9.

PMID:
18835503
39.

Assignment of Streptococcus agalactiae isolates to clonal complexes using a small set of single nucleotide polymorphisms.

Honsa E, Fricke T, Stephens AJ, Ko D, Kong F, Gilbert GL, Huygens F, Giffard PM.

BMC Microbiol. 2008 Aug 19;8:140. doi: 10.1186/1471-2180-8-140.

40.

Real-time PCR detection of pathogenic microorganisms in roof-harvested rainwater in Southeast Queensland, Australia.

Ahmed W, Huygens F, Goonetilleke A, Gardner T.

Appl Environ Microbiol. 2008 Sep;74(17):5490-6. doi: 10.1128/AEM.00331-08. Epub 2008 Jul 11.

41.

Methicillin-susceptible, non-multiresistant methicillin-resistant and multiresistant methicillin-resistant Staphylococcus aureus infections: a clinical, epidemiological and microbiological comparative study.

Munckhof WJ, Nimmo GR, Carney J, Schooneveldt JM, Huygens F, Inman-Bamber J, Tong E, Morton A, Giffard P.

Eur J Clin Microbiol Infect Dis. 2008 May;27(5):355-64. doi: 10.1007/s10096-007-0449-3. Epub 2008 Feb 16.

PMID:
18278529
42.

High-resolution melting analysis of the spa repeat region of Staphylococcus aureus.

Stephens AJ, Inman-Bamber J, Giffard PM, Huygens F.

Clin Chem. 2008 Feb;54(2):432-6. doi: 10.1373/clinchem.2007.093658.

43.

Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants.

Price EP, Inman-Bamber J, Thiruvenkataswamy V, Huygens F, Giffard PM.

BMC Bioinformatics. 2007 Aug 1;8:278.

44.

Systematic derivation of marker sets for staphylococcal cassette chromosome mec typing.

Stephens AJ, Huygens F, Giffard PM.

Antimicrob Agents Chemother. 2007 Aug;51(8):2954-64. Epub 2007 May 21.

45.

High-resolution DNA melt curve analysis of the clustered, regularly interspaced short-palindromic-repeat locus of Campylobacter jejuni.

Price EP, Smith H, Huygens F, Giffard PM.

Appl Environ Microbiol. 2007 May;73(10):3431-6. Epub 2007 Mar 30.

46.

Use of a single-nucleotide polymorphism genotyping system to demonstrate the unique epidemiology of methicillin-resistant Staphylococcus aureus in remote aboriginal communities.

McDonald M, Dougall A, Holt D, Huygens F, Oppedisano F, Giffard PM, Inman-Bamber J, Stephens AJ, Towers R, Carapetis JR, Currie BJ.

J Clin Microbiol. 2006 Oct;44(10):3720-7.

47.

Staphylococcus aureus genotyping using novel real-time PCR formats.

Huygens F, Inman-Bamber J, Nimmo GR, Munckhof W, Schooneveldt J, Harrison B, McMahon JA, Giffard PM.

J Clin Microbiol. 2006 Oct;44(10):3712-9.

48.
49.

Genotyping of Campylobacter jejuni using seven single-nucleotide polymorphisms in combination with flaA short variable region sequencing.

Price EP, Thiruvenkataswamy V, Mickan L, Unicomb L, Rios RE, Huygens F, Giffard PM.

J Med Microbiol. 2006 Aug;55(Pt 8):1061-70.

PMID:
16849726
50.

Carriage of methicillin-resistant Staphylococcus aureus in a Queensland Indigenous community.

Vlack S, Cox L, Peleg AY, Canuto C, Stewart C, Conlon A, Stephens A, Giffard P, Huygens F, Mollinger A, Vohra R, McCarthy JS.

Med J Aust. 2006 Jun 5;184(11):556-9.

PMID:
16768661

Supplemental Content

Loading ...
Support Center