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Items: 19

1.

A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies.

Utturkar SM, Klingeman DM, Hurt RA Jr, Brown SD.

Front Microbiol. 2017 Jul 18;8:1272. doi: 10.3389/fmicb.2017.01272. eCollection 2017.

2.

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation.

King AJ, Preheim SP, Bailey KL, Robeson MS 2nd, Roy Chowdhury T, Crable BR, Hurt RA Jr, Mehlhorn T, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, Lancaster WA, Poole F, Watson DB, W Fields M, Chandonia JM, Alm EJ, Zhou J, Adams MW, Hazen TC, Arkin AP, Elias DA.

Environ Sci Technol. 2017 Mar 7;51(5):2879-2889. doi: 10.1021/acs.est.6b04751. Epub 2017 Feb 10.

3.

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD.

Genome Announc. 2016 Sep 29;4(5). pii: e01043-16. doi: 10.1128/genomeA.01043-16.

4.

Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment.

Christensen GA, Wymore AM, King AJ, Podar M, Hurt RA Jr, Santillan EU, Soren A, Brandt CC, Brown SD, Palumbo AV, Wall JD, Gilmour CC, Elias DA.

Appl Environ Microbiol. 2016 Sep 16;82(19):6068-78. doi: 10.1128/AEM.01271-16. Print 2016 Oct 1.

5.

Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603.

Dassa B, Utturkar S, Hurt RA, Klingeman DM, Keller M, Xu J, Reddy YH, Borovok I, Rozman Grinberg I, Lamed R, Zhivin O, Bayer EA, Brown SD.

Genome Announc. 2015 Sep 24;3(5). pii: e01022-15. doi: 10.1128/genomeA.01022-15.

6.

Natural bacterial communities serve as quantitative geochemical biosensors.

Smith MB, Rocha AM, Smillie CS, Olesen SW, Paradis C, Wu L, Campbell JH, Fortney JL, Mehlhorn TL, Lowe KA, Earles JE, Phillips J, Techtmann SM, Joyner DC, Elias DA, Bailey KL, Hurt RA Jr, Preheim SP, Sanders MC, Yang J, Mueller MA, Brooks S, Watson DB, Zhang P, He Z, Dubinsky EA, Adams PD, Arkin AP, Fields MW, Zhou J, Alm EJ, Hazen TC.

MBio. 2015 May 12;6(3):e00326-15. doi: 10.1128/mBio.00326-15.

7.

Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation.

Smith SD, Bridou R, Johs A, Parks JM, Elias DA, Hurt RA Jr, Brown SD, Podar M, Wall JD.

Appl Environ Microbiol. 2015 May 1;81(9):3205-17. doi: 10.1128/AEM.00217-15. Epub 2015 Feb 27.

8.

Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.

Hurt RA Jr, Robeson MS 2nd, Shakya M, Moberly JG, Vishnivetskaya TA, Gu B, Elias DA.

PLoS One. 2014 Jul 17;9(7):e102826. doi: 10.1371/journal.pone.0102826. eCollection 2014.

9.

Metallomics of two microorganisms relevant to heavy metal bioremediation reveal fundamental differences in metal assimilation and utilization.

Lancaster WA, Menon AL, Scott I, Poole FL, Vaccaro BJ, Thorgersen MP, Geller J, Hazen TC, Hurt RA Jr, Brown SD, Elias DA, Adams MW.

Metallomics. 2014 May;6(5):1004-13. doi: 10.1039/c4mt00050a.

PMID:
24706256
10.

Mercury methylation by novel microorganisms from new environments.

Gilmour CC, Podar M, Bullock AL, Graham AM, Brown SD, Somenahally AC, Johs A, Hurt RA Jr, Bailey KL, Elias DA.

Environ Sci Technol. 2013 Oct 15;47(20):11810-20. doi: 10.1021/es403075t. Epub 2013 Sep 26.

PMID:
24024607
11.

Draft genome sequences for three mercury-methylating, sulfate-reducing bacteria.

Brown SD, Hurt RA Jr, Gilmour CC, Elias DA.

Genome Announc. 2013 Aug 15;1(4). pii: e00618-13. doi: 10.1128/genomeA.00618-13.

12.

The genetic basis for bacterial mercury methylation.

Parks JM, Johs A, Podar M, Bridou R, Hurt RA Jr, Smith SD, Tomanicek SJ, Qian Y, Brown SD, Brandt CC, Palumbo AV, Smith JC, Wall JD, Elias DA, Liang L.

Science. 2013 Mar 15;339(6125):1332-5. doi: 10.1126/science.1230667. Epub 2013 Feb 7.

13.

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA.

J Bacteriol. 2012 Sep;194(18):5147-8. doi: 10.1128/JB.01174-12.

14.

Sequencing intractable DNA to close microbial genomes.

Hurt RA Jr, Brown SD, Podar M, Palumbo AV, Elias DA.

PLoS One. 2012;7(7):e41295. doi: 10.1371/journal.pone.0041295. Epub 2012 Jul 31.

15.

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Mosher JJ, Phelps TJ, Podar M, Hurt RA Jr, Campbell JH, Drake MM, Moberly JG, Schadt CW, Brown SD, Hazen TC, Arkin AP, Palumbo AV, Faybishenko BA, Elias DA.

Appl Environ Microbiol. 2012 Apr;78(7):2082-91. doi: 10.1128/AEM.07165-11. Epub 2012 Jan 20.

16.

Detection and quantification of copper-denitrifying bacteria by quantitative competitive PCR.

Qiu XY, Hurt RA, Wu LY, Chen CH, Tiedje JM, Zhou JZ.

J Microbiol Methods. 2004 Nov;59(2):199-210.

PMID:
15369856
17.

Development and evaluation of functional gene arrays for detection of selected genes in the environment.

Wu L, Thompson DK, Li G, Hurt RA, Tiedje JM, Zhou J.

Appl Environ Microbiol. 2001 Dec;67(12):5780-90.

18.

Simultaneous recovery of RNA and DNA from soils and sediments.

Hurt RA, Qiu X, Wu L, Roh Y, Palumbo AV, Tiedje JM, Zhou J.

Appl Environ Microbiol. 2001 Oct;67(10):4495-503.

19.

More than skin deep. Guidelines on caring for the burn patient.

Hurt RA.

Nursing. 1985 Jun;15(6):52-7. No abstract available.

PMID:
3846839

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