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Items: 1 to 50 of 51

1.

Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol.

Li Z, Yao Q, Guo X, Crits-Christoph A, Mayes MA, Iv WJH, Lebeis SL, Banfield JF, Hurst GB, Hettich RL, Pan C.

Front Microbiol. 2019 Dec 6;10:2706. doi: 10.3389/fmicb.2019.02706. eCollection 2019.

2.

Characterization of Indole-3-acetic Acid Biosynthesis and the Effects of This Phytohormone on the Proteome of the Plant-Associated Microbe Pantoea sp. YR343.

Estenson K, Hurst GB, Standaert RF, Bible AN, Garcia D, Chourey K, Doktycz MJ, Morrell-Falvey JL.

J Proteome Res. 2018 Apr 6;17(4):1361-1374. doi: 10.1021/acs.jproteome.7b00708. Epub 2018 Feb 26.

PMID:
29464956
3.

Proteomics-Based Tools for Evaluation of Cell-Free Protein Synthesis.

Hurst GB, Asano KG, Doktycz CJ, Consoli EJ, Doktycz WL, Foster CM, Morrell-Falvey JL, Standaert RF, Doktycz MJ.

Anal Chem. 2017 Nov 7;89(21):11443-11451. doi: 10.1021/acs.analchem.7b02555. Epub 2017 Oct 17.

PMID:
29039646
4.

In Vivo Protein Dynamics on the Nanometer Length Scale and Nanosecond Time Scale.

Anunciado DB, Nyugen VP, Hurst GB, Doktycz MJ, Urban V, Langan P, Mamontov E, O'Neill H.

J Phys Chem Lett. 2017 Apr 20;8(8):1899-1904. doi: 10.1021/acs.jpclett.7b00399. Epub 2017 Apr 13.

PMID:
28388043
5.

Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system.

Li Z, Yao Q, Dearth SP, Entler MR, Castro Gonzalez HF, Uehling JK, Vilgalys RJ, Hurst GB, Campagna SR, Labbé JL, Pan C.

Environ Microbiol. 2017 Mar;19(3):1041-1053. doi: 10.1111/1462-2920.13605. Epub 2017 Jan 30.

PMID:
27871150
6.

Pyrophosphate-Dependent ATP Formation from Acetyl Coenzyme A in Syntrophus aciditrophicus, a New Twist on ATP Formation.

James KL, Ríos-Hernández LA, Wofford NQ, Mouttaki H, Sieber JR, Sheik CS, Nguyen HH, Yang Y, Xie Y, Erde J, Rohlin L, Karr EA, Loo JA, Ogorzalek Loo RR, Hurst GB, Gunsalus RP, Szweda LI, McInerney MJ.

mBio. 2016 Aug 16;7(4). pii: e01208-16. doi: 10.1128/mBio.01208-16.

7.

Metabolic adaptations of Azospirillum brasilense to oxygen stress by cell-to-cell clumping and flocculation.

Bible AN, Khalsa-Moyers GK, Mukherjee T, Green CS, Mishra P, Purcell A, Aksenova A, Hurst GB, Alexandre G.

Appl Environ Microbiol. 2015 Dec;81(24):8346-57. doi: 10.1128/AEM.02782-15. Epub 2015 Sep 25.

8.

Rhodopseudomonas palustris CGA010 Proteome Implicates Extracytoplasmic Function Sigma Factor in Stress Response.

Allen MS, Hurst GB, Lu TY, Perry LM, Pan C, Lankford PK, Pelletier DA.

J Proteome Res. 2015 May 1;14(5):2158-68. doi: 10.1021/pr5012558. Epub 2015 Apr 8.

PMID:
25853567
9.

Proteomic analysis reveals metabolic and regulatory systems involved in the syntrophic and axenic lifestyle of Syntrophomonas wolfei.

Sieber JR, Crable BR, Sheik CS, Hurst GB, Rohlin L, Gunsalus RP, McInerney MJ.

Front Microbiol. 2015 Feb 11;6:115. doi: 10.3389/fmicb.2015.00115. eCollection 2015.

10.

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics.

Yang S, Pan C, Hurst GB, Dice L, Davison BH, Brown SD.

Front Microbiol. 2014 May 22;5:246. doi: 10.3389/fmicb.2014.00246. eCollection 2014.

11.

Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis.

Li Z, Czarnecki O, Chourey K, Yang J, Tuskan GA, Hurst GB, Pan C, Chen JG.

J Proteome Res. 2014 Mar 7;13(3):1359-72. doi: 10.1021/pr400925t. Epub 2014 Feb 24.

PMID:
24559214
12.

Discovery of a novel methanogen prevalent in thawing permafrost.

Mondav R, Woodcroft BJ, Kim EH, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, VerBerkmoes NC, Saleska SR, Hugenholtz P, Rich VI, Tyson GW.

Nat Commun. 2014;5:3212. doi: 10.1038/ncomms4212.

PMID:
24526077
13.

Atomic force microscope controlled topographical imaging and proximal probe thermal desorption/ionization mass spectrometry imaging.

Ovchinnikova OS, Kjoller K, Hurst GB, Pelletier DA, Van Berkel GJ.

Anal Chem. 2014 Jan 21;86(2):1083-90. doi: 10.1021/ac4026576. Epub 2013 Dec 30.

PMID:
24377265
14.

Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

Yang S, Pan C, Tschaplinski TJ, Hurst GB, Engle NL, Zhou W, Dam P, Xu Y, Rodriguez M Jr, Dice L, Johnson CM, Davison BH, Brown SD.

PLoS One. 2013 Jul 16;8(7):e68886. doi: 10.1371/journal.pone.0068886. Print 2013. Erratum in: PLoS One. 2014;9(6):e101305.

15.

Dynamic development of the protein corona on silica nanoparticles: composition and role in toxicity.

Mortensen NP, Hurst GB, Wang W, Foster CM, Nallathamby PD, Retterer ST.

Nanoscale. 2013 Jul 21;5(14):6372-80. doi: 10.1039/c3nr33280b. Epub 2013 Jun 4.

PMID:
23736871
16.

System-wide studies of N-lysine acetylation in Rhodopseudomonas palustris reveal substrate specificity of protein acetyltransferases.

Crosby HA, Pelletier DA, Hurst GB, Escalante-Semerena JC.

J Biol Chem. 2012 May 4;287(19):15590-601. doi: 10.1074/jbc.M112.352104. Epub 2012 Mar 13.

17.

Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.

Wisniewski-Dyé F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, Boyer M, Siguier P, Dessaux Y, Elmerich C, Condemine G, Krishnen G, Kennedy I, Paterson AH, González V, Mavingui P, Zhulin IB.

PLoS Genet. 2011 Dec;7(12):e1002430. doi: 10.1371/journal.pgen.1002430. Epub 2011 Dec 22.

18.

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

Li Z, Adams RM, Chourey K, Hurst GB, Hettich RL, Pan C.

J Proteome Res. 2012 Mar 2;11(3):1582-90. doi: 10.1021/pr200748h. Epub 2012 Feb 16.

PMID:
22188275
19.

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Yang X, Tschaplinski TJ, Hurst GB, Jawdy S, Abraham PE, Lankford PK, Adams RM, Shah MB, Hettich RL, Lindquist E, Kalluri UC, Gunter LE, Pennacchio C, Tuskan GA.

Genome Res. 2011 Apr;21(4):634-41. doi: 10.1101/gr.109280.110. Epub 2011 Mar 2.

20.

The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1.

Giannone RJ, McDonald HW, Hurst GB, Shen RF, Wang Y, Liu Y.

PLoS One. 2010 Aug 25;5(8):e12407. doi: 10.1371/journal.pone.0012407.

21.

Improved genome annotation for Zymomonas mobilis.

Yang S, Pappas KM, Hauser LJ, Land ML, Chen GL, Hurst GB, Pan C, Kouvelis VN, Typas MA, Pelletier DA, Klingeman DM, Chang YJ, Samatova NF, Brown SD.

Nat Biotechnol. 2009 Oct;27(10):893-4. doi: 10.1038/nbt1009-893. No abstract available.

PMID:
19816441
22.

Shotgun proteome profile of Populus developing xylem.

Kalluri UC, Hurst GB, Lankford PK, Ranjan P, Pelletier DA.

Proteomics. 2009 Nov;9(21):4871-80. doi: 10.1002/pmic.200800854.

PMID:
19743414
23.

An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities.

Edwards AN, Fowlkes JD, Owens ET, Standaert RF, Pelletier DA, Hurst GB, Doktycz MJ, Morrell-Falvey JL.

Anal Biochem. 2009 Dec 15;395(2):166-77. doi: 10.1016/j.ab.2009.08.015. Epub 2009 Aug 19.

PMID:
19698693
24.

Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements.

Hervey WJ 4th, Khalsa-Moyers G, Lankford PK, Owens ET, McKeown CK, Lu TY, Foote LJ, Asano KG, Morrell-Falvey JL, McDonald WH, Pelletier DA, Hurst GB.

J Proteome Res. 2009 Jul;8(7):3675-88. doi: 10.1021/pr801088f.

PMID:
19459691
25.

Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis.

Raman B, Pan C, Hurst GB, Rodriguez M Jr, McKeown CK, Lankford PK, Samatova NF, Mielenz JR.

PLoS One. 2009;4(4):e5271. doi: 10.1371/journal.pone.0005271. Epub 2009 Apr 22.

26.

A general system for studying protein-protein interactions in Gram-negative bacteria.

Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ 4th, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, Auberry DL, Wang Y, Larimer FW, Kennel SJ, Doktycz MJ, Morrell-Falvey JL, Owens ET, Buchanan MV.

J Proteome Res. 2008 Aug;7(8):3319-28. doi: 10.1021/pr8001832. Epub 2008 Jul 1.

PMID:
18590317
27.

Dual-tagging system for the affinity purification of mammalian protein complexes.

Giannone RJ, McDonald WH, Hurst GB, Huang Y, Wu J, Liu Y, Wang Y.

Biotechniques. 2007 Sep;43(3):296, 298, 300 passim.

28.

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Sharp JL, Anderson KK, Hurst GB, Daly DS, Pelletier DA, Cannon WR, Auberry DL, Schmoyer DD, McDonald WH, White AM, Hooker BS, Victry KD, Buchanan MV, Kery V, Wiley HS.

J Proteome Res. 2007 Sep;6(9):3788-95. Epub 2007 Aug 11.

PMID:
17691832
29.

Comparison of digestion protocols for microgram quantities of enriched protein samples.

Hervey WJ 4th, Strader MB, Hurst GB.

J Proteome Res. 2007 Aug;6(8):3054-61. Epub 2007 Jul 6.

PMID:
17616116
30.

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

Pan C, Kora G, McDonald WH, Tabb DL, VerBerkmoes NC, Hurst GB, Pelletier DA, Samatova NF, Hettich RL.

Anal Chem. 2006 Oct 15;78(20):7121-31.

PMID:
17037911
31.

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

Pan C, Kora G, Tabb DL, Pelletier DA, McDonald WH, Hurst GB, Hettich RL, Samatova NF.

Anal Chem. 2006 Oct 15;78(20):7110-20.

PMID:
17037910
32.

Determination of peptide and protein ion charge states by Fourier transformation of isotope-resolved mass spectra.

Tabb DL, Shah MB, Strader MB, Connelly HM, Hettich RL, Hurst GB.

J Am Soc Mass Spectrom. 2006 Jul;17(7):903-915. doi: 10.1016/j.jasms.2006.02.003. Epub 2006 May 19.

33.

Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states.

VerBerkmoes NC, Shah MB, Lankford PK, Pelletier DA, Strader MB, Tabb DL, McDonald WH, Barton JW, Hurst GB, Hauser L, Davison BH, Beatty JT, Harwood CS, Tabita FR, Hettich RL, Larimer FW.

J Proteome Res. 2006 Feb;5(2):287-98.

PMID:
16457594
34.

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems.

Strader MB, Tabb DL, Hervey WJ, Pan C, Hurst GB.

Anal Chem. 2006 Jan 1;78(1):125-34.

PMID:
16383319
35.

Analysis of ligand-receptor cross-linked fragments by mass spectrometry.

Son CD, Sargsyan H, Hurst GB, Naider F, Becker JM.

J Pept Res. 2005 Mar;65(3):418-26.

PMID:
15787972
36.

Characterization of the 70S Ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach.

Strader MB, Verberkmoes NC, Tabb DL, Connelly HM, Barton JW, Bruce BD, Pelletier DA, Davison BH, Hettich RL, Larimer FW, Hurst GB.

J Proteome Res. 2004 Sep-Oct;3(5):965-78.

PMID:
15473684
37.

Assignment of the four disulfides in the N-terminal somatomedin B domain of native vitronectin isolated from human plasma.

Horn NA, Hurst GB, Mayasundari A, Whittemore NA, Serpersu EH, Peterson CB.

J Biol Chem. 2004 Aug 20;279(34):35867-78. Epub 2004 Jun 1.

38.

Mass spectrometric detection of affinity purified crosslinked peptides.

Hurst GB, Lankford TK, Kennel SJ.

J Am Soc Mass Spectrom. 2004 Jun;15(6):832-9.

39.

Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes.

Buchanan MV, Larimer FW, Wiley HS, Kennel SJ, Squier TJ, Ramsey JM, Rodland KD, Hurst GB, Smith RD, Xu Y, Dixon D, Doktycz MJ, Colson S, Gesteland R, Giometti C, Young M, Giddings M.

OMICS. 2002;6(4):287-303.

PMID:
12630408
40.

Intact protein analysis for site-directed mutagenesis overexpression products: plasmid-encoded R67 dihydrofolate reductase.

VerBerkmoes NC, Strader MB, Smiley RD, Howell EE, Hurst GB, Hettich RL, Stephenson JL Jr.

Anal Biochem. 2002 Jun 1;305(1):68-81.

PMID:
12018947
41.

Oligonucleotide mixture analysis via electrospray and ion/ion reactions in a quadrupole ion trap.

McLuckey SA, Wu J, Bundy JL, Stephenson JL Jr, Hurst GB.

Anal Chem. 2002 Mar 1;74(5):976-84.

PMID:
11925000
42.
43.

Labeling and distribution of linear peptides identified using in vivo phage display selection for tumors.

Kennel SJ, Mirzadeh S, Hurst GB, Foote LJ, Lankford TK, Glowienka KA, Chappell LL, Kelso JR, Davern SM, Safavy A, Brechbiel MW.

Nucl Med Biol. 2000 Nov;27(8):815-25.

PMID:
11150716
44.

Analysis for TNF-alpha using solid-phase affinity capture with radiolabel and MALDI-MS detection.

Hurst GB, Buchanan MV, Foote LJ, Kennel SJ.

Anal Chem. 1999 Oct 15;71(20):4727-33.

PMID:
10546537
45.

MALDI-TOF analysis of polymerase chain reaction products from methanotrophic bacteria.

Hurst GB, Weaver K, Doktycz MJ, Buchanan MV, Costello AM, Lidstrom ME.

Anal Chem. 1998 Jul 1;70(13):2693-8.

PMID:
9666732
46.
47.

Detection of bacterial DNA polymerase chain reaction products by matrix-assisted laser desorption/ionization mass spectrometry.

Hurst GB, Doktycz MJ, Vass AA, Buchanan MV.

Rapid Commun Mass Spectrom. 1996;10(3):377-82.

PMID:
8949484
48.

Analysis of polymerase chain reaction-amplified DNA products by mass spectrometry using matrix-assisted laser desorption and electrospray: current status.

Doktycz MJ, Hurst GB, Habibi-Goudarzi S, McLuckey SA, Tang K, Chen CH, Uziel M, Jacobson KB, Woychik RP, Buchanan MV.

Anal Biochem. 1995 Sep 20;230(2):205-14.

PMID:
7503409
49.

Analysis of modified oligonucleotides by matrix-assisted laser desorption/ionization Fourier transform mass spectrometry.

Stemmler EA, Buchanan MV, Hurst GB, Hettich RL.

Anal Chem. 1995 Sep 1;67(17):2924-30.

PMID:
8779417

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