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Items: 1 to 50 of 95


Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil.

Blazewicz SJ, Hungate BA, Koch BJ, Nuccio EE, Morrissey E, Brodie EL, Schwartz E, Pett-Ridge J, Firestone MK.

ISME J. 2020 Mar 12. doi: 10.1038/s41396-020-0617-3. [Epub ahead of print]


Lower-than-expected CH4 emissions from rice paddies with rising CO2 concentrations.

Qian H, Huang S, Chen J, Wang L, Hungate BA, van Kessel C, Zhang J, Deng A, Jiang Y, van Groenigen KJ, Zhang W.

Glob Chang Biol. 2020 Jan 31. doi: 10.1111/gcb.14984. [Epub ahead of print]


Opposing effects of bacterial endophytes on biomass allocation of a wild donor and agricultural recipient.

Rubin RL, Jones AN, Hayer M, Shuman-Goodier ME, Andrews LV, Hungate BA.

FEMS Microbiol Ecol. 2020 Mar 1;96(3). pii: fiaa012. doi: 10.1093/femsec/fiaa012.


Soil carbon loss with warming: New evidence from carbon-degrading enzymes.

Chen J, Elsgaard L, van Groenigen KJ, Olesen JE, Liang Z, Jiang Y, Laerke PE, Zhang Y, Luo Y, Hungate BA, Sinsabaugh RL, Jørgensen U.

Glob Chang Biol. 2020 Jan 7. doi: 10.1111/gcb.14986. [Epub ahead of print]


Polychlorinated biphenyl (PCB) contamination of subsistence species on Unalaska Island in the Aleutian Archipelago.

Adams EM, von Hippel FA, Hungate BA, Buck CL.

Heliyon. 2019 Dec 10;5(12):e02989. doi: 10.1016/j.heliyon.2019.e02989. eCollection 2019 Dec.


Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning.

Yang S, Zheng Q, Yang Y, Yuan M, Ma X, Chiariello NR, Docherty KM, Field CB, Gutknecht JLM, Hungate BA, Niboyet A, Le Roux X, Zhou J.

Glob Chang Biol. 2020 Feb;26(2):431-442. doi: 10.1111/gcb.14852. Epub 2019 Oct 26.


Glucose triggers strong taxon-specific responses in microbial growth and activity: insights from DNA and RNA qSIP.

Papp K, Hungate BA, Schwartz E.

Ecology. 2020 Jan;101(1):e02887. doi: 10.1002/ecy.2887. Epub 2019 Nov 25.


Microbial Taxon-Specific Isotope Incorporation with DNA Quantitative Stable Isotope Probing.

Finley BK, Hayer M, Mau RL, Purcell AM, Koch BJ, van Gestel NC, Schwartz E, Hungate BA.

Methods Mol Biol. 2019;2046:137-149. doi: 10.1007/978-1-4939-9721-3_11.


Stable Isotope Probing of Microorganisms in Environmental Samples with H218O.

Schwartz E, Hayer M, Hungate BA, Mau RL.

Methods Mol Biol. 2019;2046:129-136. doi: 10.1007/978-1-4939-9721-3_10.


Evolutionary history constrains microbial traits across environmental variation.

Morrissey EM, Mau RL, Hayer M, Liu XA, Schwartz E, Dijkstra P, Koch BJ, Allen K, Blazewicz SJ, Hofmockel K, Pett-Ridge J, Hungate BA.

Nat Ecol Evol. 2019 Jul;3(7):1064-1069. doi: 10.1038/s41559-019-0918-y. Epub 2019 Jun 17.


Opinion: Managing for disturbance stabilizes forest carbon.

Hurteau MD, North MP, Koch GW, Hungate BA.

Proc Natl Acad Sci U S A. 2019 May 21;116(21):10193-10195. doi: 10.1073/pnas.1905146116. No abstract available.


Predictive genomic traits for bacterial growth in culture versus actual growth in soil.

Li J, Mau RL, Dijkstra P, Koch BJ, Schwartz E, Liu XA, Morrissey EM, Blazewicz SJ, Pett-Ridge J, Stone BW, Hayer M, Hungate BA.

ISME J. 2019 Sep;13(9):2162-2172. doi: 10.1038/s41396-019-0422-z. Epub 2019 May 3.


Decadal biomass increment in early secondary succession woody ecosystems is increased by CO2 enrichment.

Walker AP, De Kauwe MG, Medlyn BE, Zaehle S, Iversen CM, Asao S, Guenet B, Harper A, Hickler T, Hungate BA, Jain AK, Luo Y, Lu X, Lu M, Luus K, Megonigal JP, Oren R, Ryan E, Shu S, Talhelm A, Wang YP, Warren JM, Werner C, Xia J, Yang B, Zak DR, Norby RJ.

Nat Commun. 2019 Feb 14;10(1):454. doi: 10.1038/s41467-019-08348-1.


Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials.

Yang S, Zheng Q, Yuan M, Shi Z, Chiariello NR, Docherty KM, Dong S, Field CB, Gu Y, Gutknecht J, Hungate BA, Le Roux X, Ma X, Niboyet A, Yuan T, Zhou J, Yang Y.

Sci Total Environ. 2019 Feb 20;652:1474-1481. doi: 10.1016/j.scitotenv.2018.10.353. Epub 2018 Oct 28.


Limited potential of harvest index improvement to reduce methane emissions from rice paddies.

Jiang Y, Qian H, Wang L, Feng J, Huang S, Hungate BA, van Kessel C, Horwath WR, Zhang X, Qin X, Li Y, Feng X, Zhang J, Deng A, Zheng C, Song Z, Hu S, van Groenigen KJ, Zhang W.

Glob Chang Biol. 2019 Feb;25(2):686-698. doi: 10.1111/gcb.14529. Epub 2018 Dec 13.


Antibiotic-resistant Escherichia coli from retail poultry meat with different antibiotic use claims.

Davis GS, Waits K, Nordstrom L, Grande H, Weaver B, Papp K, Horwinski J, Koch B, Hungate BA, Liu CM, Price LB.

BMC Microbiol. 2018 Nov 3;18(1):174. doi: 10.1186/s12866-018-1322-5.


Ecosystem context illuminates conflicting roles of plant diversity in carbon storage.

Carol Adair E, Hooper DU, Paquette A, Hungate BA.

Ecol Lett. 2018 Nov;21(11):1604-1619. doi: 10.1111/ele.13145. Epub 2018 Aug 27.


A keystone microbial enzyme for nitrogen control of soil carbon storage.

Chen J, Luo Y, van Groenigen KJ, Hungate BA, Cao J, Zhou X, Wang RW.

Sci Adv. 2018 Aug 22;4(8):eaaq1689. doi: 10.1126/sciadv.aaq1689. eCollection 2018 Aug.


Quantitative stable isotope probing with H218O reveals that most bacterial taxa in soil synthesize new ribosomal RNA.

Papp K, Mau RL, Hayer M, Koch BJ, Hungate BA, Schwartz E.

ISME J. 2018 Dec;12(12):3043-3045. doi: 10.1038/s41396-018-0233-7. Epub 2018 Jul 24.


Developing climate-smart restoration: Can plant microbiomes be hardened against heat waves?

Rubin RL, Koch GW, Martinez A, Mau RL, Bowker MA, Hungate BA.

Ecol Appl. 2018 Sep;28(6):1594-1605. doi: 10.1002/eap.1763. Epub 2018 Jul 10.


Linking tree genetics and stream consumers: isotopic tracers elucidate controls on carbon and nitrogen assimilation.

Compson ZG, Hungate BA, Whitham TG, Koch GW, Dijkstra P, Siders AC, Wojtowicz T, Jacobs R, Rakestraw DN, Allred KE, Sayer CK, Marks JC.

Ecology. 2018 Aug;99(8):1759-1770. doi: 10.1002/ecy.2224. Epub 2018 Jul 5.


Predicting soil carbon loss with warming.

van Gestel N, Shi Z, van Groenigen KJ, Osenberg CW, Andresen LC, Dukes JS, Hovenden MJ, Luo Y, Michelsen A, Pendall E, Reich PB, Schuur EAG, Hungate BA.

Nature. 2018 Feb 21;554(7693):E4-E5. doi: 10.1038/nature25745. No abstract available.


Microbial rRNA Synthesis and Growth Compared through Quantitative Stable Isotope Probing with H218O.

Papp K, Hungate BA, Schwartz E.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02441-17. doi: 10.1128/AEM.02441-17. Print 2018 Apr 15.


Taxonomic patterns in the nitrogen assimilation of soil prokaryotes.

Morrissey EM, Mau RL, Schwartz E, Koch BJ, Hayer M, Hungate BA.

Environ Microbiol. 2018 Mar;20(3):1112-1119. doi: 10.1111/1462-2920.14051. Epub 2018 Mar 14.


Ecosystem responses to elevated CO2 governed by plant-soil interactions and the cost of nitrogen acquisition.

Terrer C, Vicca S, Stocker BD, Hungate BA, Phillips RP, Reich PB, Finzi AC, Prentice IC.

New Phytol. 2018 Jan;217(2):507-522. doi: 10.1111/nph.14872. Epub 2017 Nov 6. Review.


Response to the Letter to the Editor Regarding Our Viewpoint "Sequestering Soil Organic Carbon: A Nitrogen Dilemma".

Van Groenigen JW, Van Kessel C, Hungate BA, Oenema O, Powlson DS, Van Groenigen KJ.

Environ Sci Technol. 2017 Oct 17;51(20):11503-11504. doi: 10.1021/acs.est.7b04554. Epub 2017 Sep 29. No abstract available.


Colonizing opportunistic pathogens (COPs): The beasts in all of us.

Price LB, Hungate BA, Koch BJ, Davis GS, Liu CM.

PLoS Pathog. 2017 Aug 10;13(8):e1006369. doi: 10.1371/journal.ppat.1006369. eCollection 2017 Aug. Review. No abstract available.


Penile Anaerobic Dysbiosis as a Risk Factor for HIV Infection.

Liu CM, Prodger JL, Tobian AAR, Abraham AG, Kigozi G, Hungate BA, Aziz M, Nalugoda F, Sariya S, Serwadda D, Kaul R, Gray RH, Price LB.

mBio. 2017 Jul 25;8(4). pii: e00996-17. doi: 10.1128/mBio.00996-17.


Faster turnover of new soil carbon inputs under increased atmospheric CO2.

van Groenigen KJ, Osenberg CW, Terrer C, Carrillo Y, Dijkstra FA, Heath J, Nie M, Pendall E, Phillips RP, Hungate BA.

Glob Chang Biol. 2017 Oct;23(10):4420-4429. doi: 10.1111/gcb.13752. Epub 2017 Jun 2.


Higher yields and lower methane emissions with new rice cultivars.

Jiang Y, van Groenigen KJ, Huang S, Hungate BA, van Kessel C, Hu S, Zhang J, Wu L, Yan X, Wang L, Chen J, Hang X, Zhang Y, Horwath WR, Ye R, Linquist BA, Song Z, Zheng C, Deng A, Zhang W.

Glob Chang Biol. 2017 Nov;23(11):4728-4738. doi: 10.1111/gcb.13737. Epub 2017 Jun 1.


The economic value of grassland species for carbon storage.

Hungate BA, Barbier EB, Ando AW, Marks SP, Reich PB, van Gestel N, Tilman D, Knops JMH, Hooper DU, Butterfield BJ, Cardinale BJ.

Sci Adv. 2017 Apr 5;3(4):e1601880. doi: 10.1126/sciadv.1601880. eCollection 2017 Apr.


Sequestering Soil Organic Carbon: A Nitrogen Dilemma.

van Groenigen JW, van Kessel C, Hungate BA, Oenema O, Powlson DS, van Groenigen KJ.

Environ Sci Technol. 2017 May 2;51(9):4738-4739. doi: 10.1021/acs.est.7b01427. Epub 2017 Apr 20. No abstract available.


Bacterial carbon use plasticity, phylogenetic diversity and the priming of soil organic matter.

Morrissey EM, Mau RL, Schwartz E, McHugh TA, Dijkstra P, Koch BJ, Marks JC, Hungate BA.

ISME J. 2017 Aug;11(8):1890-1899. doi: 10.1038/ismej.2017.43. Epub 2017 Apr 7.


Response to Comment on "Mycorrhizal association as a primary control of the CO2 fertilization effect".

Terrer C, Vicca S, Hungate BA, Phillips RP, Reich PB, Franklin O, Stocker BD, Fisher JB, Prentice IC.

Science. 2017 Jan 27;355(6323):358. doi: 10.1126/science.aai8242.


Identification of growing bacteria during litter decomposition in freshwater through H218O quantitative stable isotope probing.

Hayer M, Schwartz E, Marks JC, Koch BJ, Morrissey EM, Schuettenberg AA, Hungate BA.

Environ Microbiol Rep. 2016 Dec;8(6):975-982. doi: 10.1111/1758-2229.12475. Epub 2016 Oct 13.


Mycorrhizal association as a primary control of the CO₂ fertilization effect.

Terrer C, Vicca S, Hungate BA, Phillips RP, Prentice IC.

Science. 2016 Jul 1;353(6294):72-4. doi: 10.1126/science.aaf4610.


Predicting the Responses of Soil Nitrite-Oxidizers to Multi-Factorial Global Change: A Trait-Based Approach.

Le Roux X, Bouskill NJ, Niboyet A, Barthes L, Dijkstra P, Field CB, Hungate BA, Lerondelle C, Pommier T, Tang J, Terada A, Tourna M, Poly F.

Front Microbiol. 2016 May 17;7:628. doi: 10.3389/fmicb.2016.00628. eCollection 2016.


Restoring forest structure and process stabilizes forest carbon in wildfire-prone southwestern ponderosa pine forests.

Hurteau MD, Liang S, Martin KL, North MP, Koch GW, Hungate BA.

Ecol Appl. 2016 Mar;26(2):382-91.


Stable isotope probing with 18O-water to investigate microbial growth and death in environmental samples.

Schwartz E, Hayer M, Hungate BA, Koch BJ, McHugh TA, Mercurio W, Morrissey EM, Soldanova K.

Curr Opin Biotechnol. 2016 Oct;41:14-18. doi: 10.1016/j.copbio.2016.03.003. Epub 2016 Mar 29. Review.


Hydrogen Isotopes as a Sentinel of Biological Invasion by the Japanese Beetle, Popillia japonica (Newman).

Hungate BA, Kearns DN, Ogle K, Caron M, Marks JC, Rogg HW.

PLoS One. 2016 Mar 9;11(3):e0149599. doi: 10.1371/journal.pone.0149599. eCollection 2016.


Phylogenetic organization of bacterial activity.

Morrissey EM, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, Hayer M, McHugh TA, Marks JC, Price LB, Hungate BA.

ISME J. 2016 Sep;10(9):2336-40. doi: 10.1038/ismej.2016.28. Epub 2016 Mar 4.


The Influence of Time and Plant Species on the Composition of the Decomposing Bacterial Community in a Stream Ecosystem.

Wymore AS, Liu CM, Hungate BA, Schwartz E, Price LB, Whitham TG, Marks JC.

Microb Ecol. 2016 May;71(4):825-34. doi: 10.1007/s00248-016-0735-7. Epub 2016 Feb 15.


Staphylococcus aureus and the ecology of the nasal microbiome.

Liu CM, Price LB, Hungate BA, Abraham AG, Larsen LA, Christensen K, Stegger M, Skov R, Andersen PS.

Sci Adv. 2015 Jun 5;1(5):e1400216. doi: 10.1126/sciadv.1400216. eCollection 2015 Jun.


Water from air: an overlooked source of moisture in arid and semiarid regions.

McHugh TA, Morrissey EM, Reed SC, Hungate BA, Schwartz E.

Sci Rep. 2015 Sep 8;5:13767. doi: 10.1038/srep13767.


Application of a two-pool model to soil carbon dynamics under elevated CO2.

van Groenigen KJ, Xia J, Osenberg CW, Luo Y, Hungate BA.

Glob Chang Biol. 2015 Dec;21(12):4293-7. doi: 10.1111/gcb.13074.


Quantitative microbial ecology through stable isotope probing.

Hungate BA, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, McHugh TA, Marks JC, Morrissey EM, Price LB.

Appl Environ Microbiol. 2015 Nov;81(21):7570-81. doi: 10.1128/AEM.02280-15. Epub 2015 Aug 21.


Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda.

Liu CM, Hungate BA, Tobian AA, Ravel J, Prodger JL, Serwadda D, Kigozi G, Galiwango RM, Nalugoda F, Keim P, Wawer MJ, Price LB, Gray RH.

mBio. 2015 Jun 16;6(3):e00589. doi: 10.1128/mBio.00589-15.


Ominous projections for global antibiotic use in food-animal production.

Price LB, Koch BJ, Hungate BA.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5554-5. doi: 10.1073/pnas.1505312112. Epub 2015 Apr 28. No abstract available.


Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply.

Simonin M, Le Roux X, Poly F, Lerondelle C, Hungate BA, Nunan N, Niboyet A.

Microb Ecol. 2015 Oct;70(3):809-18. doi: 10.1007/s00248-015-0604-9. Epub 2015 Apr 17.


Linking soil bacterial biodiversity and soil carbon stability.

Mau RL, Liu CM, Aziz M, Schwartz E, Dijkstra P, Marks JC, Price LB, Keim P, Hungate BA.

ISME J. 2015 Jun;9(6):1477-80. doi: 10.1038/ismej.2014.205. Epub 2014 Oct 28.

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