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Items: 19

1.

The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection.

Edwards VL, Smith SB, McComb EJ, Tamarelle J, Ma B, Humphrys MS, Gajer P, Gwilliam K, Schaefer AM, Lai SK, Terplan M, Mark KS, Brotman RM, Forney LJ, Bavoil PM, Ravel J.

MBio. 2019 Aug 13;10(4). pii: e01548-19. doi: 10.1128/mBio.01548-19.

2.

Dual RNA-Seq of Chlamydia and Host Cells.

Marsh JW, Hayward RJ, Shetty A, Mahurkar A, Humphrys MS, Myers GSA.

Methods Mol Biol. 2019;2042:123-135. doi: 10.1007/978-1-4939-9694-0_9.

PMID:
31385273
3.

Cervicovaginal microbiota and local immune response modulate the risk of spontaneous preterm delivery.

Elovitz MA, Gajer P, Riis V, Brown AG, Humphrys MS, Holm JB, Ravel J.

Nat Commun. 2019 Mar 21;10(1):1305. doi: 10.1038/s41467-019-09285-9.

4.

Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform.

Holm JB, Humphrys MS, Robinson CK, Settles ML, Ott S, Fu L, Yang H, Gajer P, He X, McComb E, Gravitt PE, Ghanem KG, Brotman RM, Ravel J.

mSystems. 2019 Feb 19;4(1). pii: e00029-19. doi: 10.1128/mSystems.00029-19. eCollection 2019 Jan-Feb.

5.

Herpes simplex virus-binding IgG traps HSV in human cervicovaginal mucus across the menstrual cycle and diverse vaginal microbial composition.

Schroeder HA, Nunn KL, Schaefer A, Henry CE, Lam F, Pauly MH, Whaley KJ, Zeitlin L, Humphrys MS, Ravel J, Lai SK.

Mucosal Immunol. 2018 Sep;11(5):1477-1486. doi: 10.1038/s41385-018-0054-z. Epub 2018 Jul 9.

6.

Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates.

Girard L, Birse K, Holm JB, Gajer P, Humphrys MS, Garber D, Guenthner P, Noël-Romas L, Abou M, McCorrister S, Westmacott G, Wang L, Rohan LC, Matoba N, McNicholl J, Palmer KE, Ravel J, Burgener AD.

Sci Rep. 2018 May 23;8(1):8059. doi: 10.1038/s41598-018-26313-8.

7.

A Laboratory Methodology for Dual RNA-Sequencing of Bacteria and their Host Cells In Vitro.

Marsh JW, Humphrys MS, Myers GSA.

Front Microbiol. 2017 Sep 21;8:1830. doi: 10.3389/fmicb.2017.01830. eCollection 2017.

8.

Group B Streptococcus and the Vaginal Microbiota.

Rosen GH, Randis TM, Desai PV, Sapra KJ, Ma B, Gajer P, Humphrys MS, Ravel J, Gelber SE, Ratner AJ.

J Infect Dis. 2017 Sep 15;216(6):744-751. doi: 10.1093/infdis/jix395.

9.

Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients.

Yu G, Torres J, Hu N, Medrano-Guzman R, Herrera-Goepfert R, Humphrys MS, Wang L, Wang C, Ding T, Ravel J, Taylor PR, Abnet CC, Goldstein AM.

Front Cell Infect Microbiol. 2017 Jul 6;7:302. doi: 10.3389/fcimb.2017.00302. eCollection 2017.

10.

Bioinformatic analysis of bacteria and host cell dual RNA-sequencing experiments.

Marsh JW, Hayward RJ, Shetty AC, Mahurkar A, Humphrys MS, Myers GSA.

Brief Bioinform. 2018 Nov 27;19(6):1115-1129. doi: 10.1093/bib/bbx043.

11.

Distinct Effects of the Cervicovaginal Microbiota and Herpes Simplex Type 2 Infection on Female Genital Tract Immunology.

Shannon B, Gajer P, Yi TJ, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Kaul R.

J Infect Dis. 2017 May 1;215(9):1366-1375. doi: 10.1093/infdis/jix088.

12.

Association of HPV infection and clearance with cervicovaginal immunology and the vaginal microbiota.

Shannon B, Yi TJ, Perusini S, Gajer P, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Rebbapragada A, Kaul R.

Mucosal Immunol. 2017 Sep;10(5):1310-1319. doi: 10.1038/mi.2016.129. Epub 2017 Jan 25.

13.

The effect of cigarette smoking on the oral and nasal microbiota.

Yu G, Phillips S, Gail MH, Goedert JJ, Humphrys MS, Ravel J, Ren Y, Caporaso NE.

Microbiome. 2017 Jan 17;5(1):3. doi: 10.1186/s40168-016-0226-6.

14.

Enhanced Trapping of HIV-1 by Human Cervicovaginal Mucus Is Associated with Lactobacillus crispatus-Dominant Microbiota.

Nunn KL, Wang YY, Harit D, Humphrys MS, Ma B, Cone R, Ravel J, Lai SK.

MBio. 2015 Oct 6;6(5):e01084-15. doi: 10.1128/mBio.01084-15.

15.

Chlamydia caviae infection alters abundance but not composition of the guinea pig vaginal microbiota.

Neuendorf E, Gajer P, Bowlin AK, Marques PX, Ma B, Yang H, Fu L, Humphrys MS, Forney LJ, Myers GS, Bavoil PM, Rank RG, Ravel J.

Pathog Dis. 2015 Jun;73(4). pii: ftv019. doi: 10.1093/femspd/ftv019. Epub 2015 Mar 10.

16.

Environmental surveillance for toxigenic Vibrio cholerae in surface waters of Haiti.

Kahler AM, Haley BJ, Chen A, Mull BJ, Tarr CL, Turnsek M, Katz LS, Humphrys MS, Derado G, Freeman N, Boncy J, Colwell RR, Huq A, Hill VR.

Am J Trop Med Hyg. 2015 Jan;92(1):118-25. doi: 10.4269/ajtmh.13-0601. Epub 2014 Nov 10.

17.

Draft Genome Sequences of Nine Enteropathogenic Escherichia coli Strains from Kenya.

Hazen TH, Humphrys MS, Ochieng JB, Parsons M, Bopp CA, O'Reilly CE, Mintz E, Rasko DA.

Genome Announc. 2014 Jun 12;2(3). pii: e00582-14. doi: 10.1128/genomeA.00582-14.

18.

Simultaneous transcriptional profiling of bacteria and their host cells.

Humphrys MS, Creasy T, Sun Y, Shetty AC, Chibucos MC, Drabek EF, Fraser CM, Farooq U, Sengamalay N, Ott S, Shou H, Bavoil PM, Mahurkar A, Myers GS.

PLoS One. 2013 Dec 4;8(12):e80597. doi: 10.1371/journal.pone.0080597. eCollection 2013.

19.

NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility.

Partridge JD, Bodenmiller DM, Humphrys MS, Spiro S.

Mol Microbiol. 2009 Aug;73(4):680-94. doi: 10.1111/j.1365-2958.2009.06799.x. Epub 2009 Jul 27.

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